Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04120 and HMPREF1078_RS04125 are separated by 82 nucleotides HMPREF1078_RS04125 and HMPREF1078_RS04130 are separated by 18 nucleotides HMPREF1078_RS04130 and HMPREF1078_RS04135 overlap by 1 nucleotides HMPREF1078_RS04135 and HMPREF1078_RS04140 are separated by 81 nucleotides
HMPREF1078_RS04120: HMPREF1078_RS04120 - hypothetical protein, at 39,013 to 39,714
_RS04120
HMPREF1078_RS04125: HMPREF1078_RS04125 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 39,797 to 40,501
_RS04125
HMPREF1078_RS04130: HMPREF1078_RS04130 - hypothetical protein, at 40,520 to 41,392
_RS04130
HMPREF1078_RS04135: HMPREF1078_RS04135 - YjjG family noncanonical pyrimidine nucleotidase, at 41,392 to 42,084
_RS04135
HMPREF1078_RS04140: HMPREF1078_RS04140 - cellulose synthase subunit BcsC-related outer membrane protein, at 42,166 to 42,651
_RS04140
Position (kb) 40
41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 39.584 kb on + strand, within HMPREF1078_RS04120 at 39.585 kb on - strand, within HMPREF1078_RS04120 at 39.585 kb on - strand, within HMPREF1078_RS04120 at 39.585 kb on - strand, within HMPREF1078_RS04120 at 39.631 kb on + strand, within HMPREF1078_RS04120 at 39.631 kb on + strand, within HMPREF1078_RS04120 at 39.631 kb on + strand, within HMPREF1078_RS04120 at 39.648 kb on - strand at 39.657 kb on + strand at 39.658 kb on - strand at 39.659 kb on + strand at 39.659 kb on + strand at 39.659 kb on + strand at 39.685 kb on - strand at 39.743 kb on + strand at 39.743 kb on + strand at 39.743 kb on + strand at 39.743 kb on + strand at 39.743 kb on + strand at 39.743 kb on + strand at 39.743 kb on + strand at 39.744 kb on - strand at 39.744 kb on - strand at 39.779 kb on + strand at 39.786 kb on + strand at 39.786 kb on + strand at 39.813 kb on + strand at 39.814 kb on - strand at 39.814 kb on - strand at 39.814 kb on - strand at 39.814 kb on - strand at 39.844 kb on + strand at 39.845 kb on - strand at 39.907 kb on + strand, within HMPREF1078_RS04125 at 39.907 kb on + strand, within HMPREF1078_RS04125 at 39.907 kb on + strand, within HMPREF1078_RS04125 at 39.917 kb on - strand, within HMPREF1078_RS04125 at 40.026 kb on + strand, within HMPREF1078_RS04125 at 40.026 kb on + strand, within HMPREF1078_RS04125 at 40.027 kb on - strand, within HMPREF1078_RS04125 at 40.027 kb on - strand, within HMPREF1078_RS04125 at 40.027 kb on - strand, within HMPREF1078_RS04125 at 40.027 kb on - strand, within HMPREF1078_RS04125 at 40.027 kb on - strand, within HMPREF1078_RS04125 at 40.095 kb on + strand, within HMPREF1078_RS04125 at 40.095 kb on + strand, within HMPREF1078_RS04125 at 40.107 kb on + strand, within HMPREF1078_RS04125 at 40.107 kb on + strand, within HMPREF1078_RS04125 at 40.107 kb on + strand, within HMPREF1078_RS04125 at 40.107 kb on + strand, within HMPREF1078_RS04125 at 40.107 kb on + strand, within HMPREF1078_RS04125 at 40.108 kb on - strand, within HMPREF1078_RS04125 at 40.152 kb on + strand, within HMPREF1078_RS04125 at 40.251 kb on - strand, within HMPREF1078_RS04125 at 40.268 kb on + strand, within HMPREF1078_RS04125 at 40.269 kb on - strand, within HMPREF1078_RS04125 at 40.269 kb on - strand, within HMPREF1078_RS04125 at 40.269 kb on - strand, within HMPREF1078_RS04125 at 40.357 kb on - strand, within HMPREF1078_RS04125 at 40.365 kb on + strand, within HMPREF1078_RS04125 at 40.365 kb on + strand, within HMPREF1078_RS04125 at 40.446 kb on + strand at 40.449 kb on + strand at 40.449 kb on + strand at 40.449 kb on + strand at 40.450 kb on - strand at 40.452 kb on + strand at 40.452 kb on + strand at 40.453 kb on - strand at 40.453 kb on - strand at 40.461 kb on + strand at 40.461 kb on + strand at 40.462 kb on - strand at 40.468 kb on + strand at 40.469 kb on - strand at 40.499 kb on + strand at 40.499 kb on + strand at 40.505 kb on - strand at 40.505 kb on - strand at 40.530 kb on + strand at 40.533 kb on + strand at 40.592 kb on + strand at 40.592 kb on + strand at 40.593 kb on - strand at 40.594 kb on + strand at 40.595 kb on - strand at 40.686 kb on + strand, within HMPREF1078_RS04130 at 40.686 kb on + strand, within HMPREF1078_RS04130 at 40.687 kb on - strand, within HMPREF1078_RS04130 at 40.724 kb on + strand, within HMPREF1078_RS04130 at 40.734 kb on + strand, within HMPREF1078_RS04130 at 40.735 kb on - strand, within HMPREF1078_RS04130 at 40.759 kb on + strand, within HMPREF1078_RS04130 at 40.934 kb on - strand, within HMPREF1078_RS04130 at 40.947 kb on - strand, within HMPREF1078_RS04130 at 40.979 kb on - strand, within HMPREF1078_RS04130 at 40.990 kb on - strand, within HMPREF1078_RS04130 at 41.038 kb on + strand, within HMPREF1078_RS04130 at 41.038 kb on + strand, within HMPREF1078_RS04130 at 41.039 kb on - strand, within HMPREF1078_RS04130 at 41.089 kb on + strand, within HMPREF1078_RS04130 at 41.089 kb on + strand, within HMPREF1078_RS04130 at 41.090 kb on - strand, within HMPREF1078_RS04130 at 41.090 kb on - strand, within HMPREF1078_RS04130 at 41.096 kb on + strand, within HMPREF1078_RS04130 at 41.096 kb on + strand, within HMPREF1078_RS04130 at 41.099 kb on + strand, within HMPREF1078_RS04130 at 41.099 kb on + strand, within HMPREF1078_RS04130 at 41.099 kb on + strand, within HMPREF1078_RS04130 at 41.099 kb on + strand, within HMPREF1078_RS04130 at 41.100 kb on - strand, within HMPREF1078_RS04130 at 41.100 kb on - strand, within HMPREF1078_RS04130 at 41.176 kb on - strand, within HMPREF1078_RS04130 at 41.195 kb on - strand, within HMPREF1078_RS04130 at 41.201 kb on + strand, within HMPREF1078_RS04130 at 41.291 kb on + strand, within HMPREF1078_RS04130 at 41.291 kb on + strand, within HMPREF1078_RS04130 at 41.291 kb on + strand, within HMPREF1078_RS04130 at 41.320 kb on + strand at 41.386 kb on - strand at 41.399 kb on - strand at 41.399 kb on - strand at 41.412 kb on + strand at 41.413 kb on - strand at 41.443 kb on + strand at 41.443 kb on + strand at 41.443 kb on + strand at 41.443 kb on + strand at 41.444 kb on - strand at 41.444 kb on - strand at 41.444 kb on - strand at 41.444 kb on - strand at 41.444 kb on - strand at 41.448 kb on + strand at 41.449 kb on - strand at 41.449 kb on - strand at 41.451 kb on + strand at 41.453 kb on - strand at 41.454 kb on + strand at 41.454 kb on + strand at 41.455 kb on - strand at 41.455 kb on - strand at 41.474 kb on + strand, within HMPREF1078_RS04135 at 41.474 kb on + strand, within HMPREF1078_RS04135 at 41.474 kb on + strand, within HMPREF1078_RS04135 at 41.474 kb on + strand, within HMPREF1078_RS04135 at 41.475 kb on - strand, within HMPREF1078_RS04135 at 41.477 kb on - strand, within HMPREF1078_RS04135 at 41.477 kb on - strand, within HMPREF1078_RS04135 at 41.478 kb on + strand, within HMPREF1078_RS04135 at 41.478 kb on + strand, within HMPREF1078_RS04135 at 41.478 kb on + strand, within HMPREF1078_RS04135 at 41.479 kb on - strand, within HMPREF1078_RS04135 at 41.500 kb on + strand, within HMPREF1078_RS04135 at 41.501 kb on - strand, within HMPREF1078_RS04135 at 41.501 kb on - strand, within HMPREF1078_RS04135 at 41.504 kb on - strand, within HMPREF1078_RS04135 at 41.504 kb on - strand, within HMPREF1078_RS04135 at 41.533 kb on + strand, within HMPREF1078_RS04135 at 41.556 kb on - strand, within HMPREF1078_RS04135 at 41.618 kb on - strand, within HMPREF1078_RS04135 at 41.738 kb on - strand, within HMPREF1078_RS04135 at 41.753 kb on - strand, within HMPREF1078_RS04135 at 41.761 kb on + strand, within HMPREF1078_RS04135 at 41.761 kb on + strand, within HMPREF1078_RS04135 at 41.761 kb on + strand, within HMPREF1078_RS04135 at 41.761 kb on + strand, within HMPREF1078_RS04135 at 41.761 kb on + strand, within HMPREF1078_RS04135 at 41.761 kb on + strand, within HMPREF1078_RS04135 at 41.761 kb on + strand, within HMPREF1078_RS04135 at 41.762 kb on - strand, within HMPREF1078_RS04135 at 41.762 kb on - strand, within HMPREF1078_RS04135 at 41.762 kb on - strand, within HMPREF1078_RS04135 at 41.764 kb on - strand, within HMPREF1078_RS04135 at 41.877 kb on + strand, within HMPREF1078_RS04135 at 41.965 kb on - strand, within HMPREF1078_RS04135 at 41.997 kb on - strand, within HMPREF1078_RS04135 at 41.997 kb on - strand, within HMPREF1078_RS04135 at 41.997 kb on - strand, within HMPREF1078_RS04135 at 41.997 kb on - strand, within HMPREF1078_RS04135 at 41.997 kb on - strand, within HMPREF1078_RS04135 at 42.080 kb on + strand at 42.081 kb on - strand at 42.087 kb on + strand at 42.087 kb on + strand at 42.087 kb on + strand at 42.087 kb on + strand at 42.087 kb on + strand at 42.087 kb on + strand at 42.087 kb on + strand at 42.088 kb on - strand at 42.088 kb on - strand at 42.088 kb on - strand at 42.088 kb on - strand at 42.088 kb on - strand at 42.177 kb on - strand at 42.243 kb on - strand, within HMPREF1078_RS04140 at 42.252 kb on + strand, within HMPREF1078_RS04140 at 42.286 kb on + strand, within HMPREF1078_RS04140 at 42.286 kb on + strand, within HMPREF1078_RS04140 at 42.287 kb on - strand, within HMPREF1078_RS04140 at 42.287 kb on - strand, within HMPREF1078_RS04140 at 42.288 kb on + strand, within HMPREF1078_RS04140 at 42.288 kb on + strand, within HMPREF1078_RS04140 at 42.289 kb on - strand, within HMPREF1078_RS04140 at 42.289 kb on - strand, within HMPREF1078_RS04140 at 42.289 kb on - strand, within HMPREF1078_RS04140
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 39,584 + HMPREF1078_RS04120 0.81 +0.4 39,585 - HMPREF1078_RS04120 0.81 +0.7 39,585 - HMPREF1078_RS04120 0.81 +0.4 39,585 - HMPREF1078_RS04120 0.81 -0.2 39,631 + HMPREF1078_RS04120 0.88 -0.2 39,631 + HMPREF1078_RS04120 0.88 -0.2 39,631 + HMPREF1078_RS04120 0.88 +0.4 39,648 - -0.6 39,657 + +0.8 39,658 - +0.9 39,659 + +0.4 39,659 + +0.1 39,659 + +0.5 39,685 - +1.1 39,743 + +0.3 39,743 + +0.9 39,743 + -1.8 39,743 + -0.1 39,743 + +0.8 39,743 + -0.0 39,743 + +0.5 39,744 - +0.6 39,744 - +0.1 39,779 + -1.1 39,786 + -2.0 39,786 + +0.4 39,813 + +1.1 39,814 - +0.9 39,814 - -1.8 39,814 - -0.7 39,814 - +0.3 39,844 + -0.2 39,845 - +0.2 39,907 + HMPREF1078_RS04125 0.16 -0.3 39,907 + HMPREF1078_RS04125 0.16 +1.9 39,907 + HMPREF1078_RS04125 0.16 -0.0 39,917 - HMPREF1078_RS04125 0.17 +0.7 40,026 + HMPREF1078_RS04125 0.32 +0.3 40,026 + HMPREF1078_RS04125 0.32 +0.9 40,027 - HMPREF1078_RS04125 0.33 +0.4 40,027 - HMPREF1078_RS04125 0.33 -0.5 40,027 - HMPREF1078_RS04125 0.33 +0.2 40,027 - HMPREF1078_RS04125 0.33 -1.4 40,027 - HMPREF1078_RS04125 0.33 -0.2 40,095 + HMPREF1078_RS04125 0.42 -0.1 40,095 + HMPREF1078_RS04125 0.42 +0.8 40,107 + HMPREF1078_RS04125 0.44 -1.0 40,107 + HMPREF1078_RS04125 0.44 +1.2 40,107 + HMPREF1078_RS04125 0.44 -0.2 40,107 + HMPREF1078_RS04125 0.44 -0.8 40,107 + HMPREF1078_RS04125 0.44 +1.4 40,108 - HMPREF1078_RS04125 0.44 +1.0 40,152 + HMPREF1078_RS04125 0.50 +0.4 40,251 - HMPREF1078_RS04125 0.64 -2.1 40,268 + HMPREF1078_RS04125 0.67 +0.1 40,269 - HMPREF1078_RS04125 0.67 +1.2 40,269 - HMPREF1078_RS04125 0.67 -1.9 40,269 - HMPREF1078_RS04125 0.67 -0.9 40,357 - HMPREF1078_RS04125 0.79 -2.3 40,365 + HMPREF1078_RS04125 0.81 -0.0 40,365 + HMPREF1078_RS04125 0.81 +0.8 40,446 + -0.2 40,449 + -0.4 40,449 + +0.4 40,449 + +0.8 40,450 - -1.9 40,452 + +0.5 40,452 + -0.0 40,453 - -0.3 40,453 - +1.4 40,461 + +0.2 40,461 + +0.0 40,462 - -2.5 40,468 + +3.5 40,469 - +0.4 40,499 + +0.4 40,499 + +0.5 40,505 - -3.7 40,505 - -2.1 40,530 + -0.4 40,533 + -0.4 40,592 + -1.8 40,592 + -0.3 40,593 - -1.5 40,594 + -0.6 40,595 - -0.3 40,686 + HMPREF1078_RS04130 0.19 -1.6 40,686 + HMPREF1078_RS04130 0.19 +0.6 40,687 - HMPREF1078_RS04130 0.19 -2.6 40,724 + HMPREF1078_RS04130 0.23 -2.1 40,734 + HMPREF1078_RS04130 0.25 -1.3 40,735 - HMPREF1078_RS04130 0.25 -1.1 40,759 + HMPREF1078_RS04130 0.27 -1.6 40,934 - HMPREF1078_RS04130 0.47 -1.2 40,947 - HMPREF1078_RS04130 0.49 -0.3 40,979 - HMPREF1078_RS04130 0.53 -3.1 40,990 - HMPREF1078_RS04130 0.54 -1.2 41,038 + HMPREF1078_RS04130 0.59 -0.9 41,038 + HMPREF1078_RS04130 0.59 -1.8 41,039 - HMPREF1078_RS04130 0.59 -1.3 41,089 + HMPREF1078_RS04130 0.65 -2.0 41,089 + HMPREF1078_RS04130 0.65 -0.2 41,090 - HMPREF1078_RS04130 0.65 -0.7 41,090 - HMPREF1078_RS04130 0.65 -0.8 41,096 + HMPREF1078_RS04130 0.66 -0.7 41,096 + HMPREF1078_RS04130 0.66 -1.8 41,099 + HMPREF1078_RS04130 0.66 +0.2 41,099 + HMPREF1078_RS04130 0.66 +0.5 41,099 + HMPREF1078_RS04130 0.66 -0.8 41,099 + HMPREF1078_RS04130 0.66 -0.8 41,100 - HMPREF1078_RS04130 0.66 -1.3 41,100 - HMPREF1078_RS04130 0.66 -0.3 41,176 - HMPREF1078_RS04130 0.75 -1.3 41,195 - HMPREF1078_RS04130 0.77 +0.4 41,201 + HMPREF1078_RS04130 0.78 -1.8 41,291 + HMPREF1078_RS04130 0.88 -1.0 41,291 + HMPREF1078_RS04130 0.88 -2.3 41,291 + HMPREF1078_RS04130 0.88 -1.6 41,320 + -1.6 41,386 - -0.6 41,399 - +0.7 41,399 - +0.5 41,412 + +0.9 41,413 - +0.4 41,443 + -1.6 41,443 + -0.5 41,443 + +0.5 41,443 + +0.7 41,444 - -1.2 41,444 - +1.1 41,444 - -0.5 41,444 - +0.3 41,444 - +0.5 41,448 + +1.3 41,449 - -0.2 41,449 - +0.3 41,451 + +0.6 41,453 - -0.4 41,454 + -2.3 41,454 + -0.1 41,455 - -0.0 41,455 - -2.9 41,474 + HMPREF1078_RS04135 0.12 +0.2 41,474 + HMPREF1078_RS04135 0.12 +0.6 41,474 + HMPREF1078_RS04135 0.12 +1.1 41,474 + HMPREF1078_RS04135 0.12 +0.6 41,475 - HMPREF1078_RS04135 0.12 +0.2 41,477 - HMPREF1078_RS04135 0.12 -1.2 41,477 - HMPREF1078_RS04135 0.12 -0.8 41,478 + HMPREF1078_RS04135 0.12 +0.3 41,478 + HMPREF1078_RS04135 0.12 +0.0 41,478 + HMPREF1078_RS04135 0.12 -0.5 41,479 - HMPREF1078_RS04135 0.13 -0.9 41,500 + HMPREF1078_RS04135 0.16 +0.3 41,501 - HMPREF1078_RS04135 0.16 -0.8 41,501 - HMPREF1078_RS04135 0.16 +0.1 41,504 - HMPREF1078_RS04135 0.16 +0.0 41,504 - HMPREF1078_RS04135 0.16 +0.3 41,533 + HMPREF1078_RS04135 0.20 -1.3 41,556 - HMPREF1078_RS04135 0.24 -0.5 41,618 - HMPREF1078_RS04135 0.33 +0.2 41,738 - HMPREF1078_RS04135 0.50 +0.2 41,753 - HMPREF1078_RS04135 0.52 -0.2 41,761 + HMPREF1078_RS04135 0.53 +0.9 41,761 + HMPREF1078_RS04135 0.53 -0.1 41,761 + HMPREF1078_RS04135 0.53 -0.0 41,761 + HMPREF1078_RS04135 0.53 -1.8 41,761 + HMPREF1078_RS04135 0.53 +0.9 41,761 + HMPREF1078_RS04135 0.53 -2.3 41,761 + HMPREF1078_RS04135 0.53 -0.4 41,762 - HMPREF1078_RS04135 0.53 -0.6 41,762 - HMPREF1078_RS04135 0.53 -1.1 41,762 - HMPREF1078_RS04135 0.53 -0.6 41,764 - HMPREF1078_RS04135 0.54 -0.3 41,877 + HMPREF1078_RS04135 0.70 +0.3 41,965 - HMPREF1078_RS04135 0.83 +0.5 41,997 - HMPREF1078_RS04135 0.87 +0.3 41,997 - HMPREF1078_RS04135 0.87 -0.5 41,997 - HMPREF1078_RS04135 0.87 +0.6 41,997 - HMPREF1078_RS04135 0.87 +1.7 41,997 - HMPREF1078_RS04135 0.87 -0.4 42,080 + +0.6 42,081 - -1.5 42,087 + -1.7 42,087 + +0.5 42,087 + +0.6 42,087 + +0.4 42,087 + +0.1 42,087 + -0.5 42,087 + -2.2 42,088 - +1.1 42,088 - +0.5 42,088 - +0.3 42,088 - -0.5 42,088 - +0.3 42,177 - +0.7 42,243 - HMPREF1078_RS04140 0.16 -2.6 42,252 + HMPREF1078_RS04140 0.18 -0.2 42,286 + HMPREF1078_RS04140 0.25 -0.8 42,286 + HMPREF1078_RS04140 0.25 -0.6 42,287 - HMPREF1078_RS04140 0.25 +0.3 42,287 - HMPREF1078_RS04140 0.25 -0.0 42,288 + HMPREF1078_RS04140 0.25 -0.9 42,288 + HMPREF1078_RS04140 0.25 +1.5 42,289 - HMPREF1078_RS04140 0.25 -2.6 42,289 - HMPREF1078_RS04140 0.25 -0.1 42,289 - HMPREF1078_RS04140 0.25 -0.8
Or see this region's nucleotide sequence