Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02850 and HMPREF1078_RS19290 are separated by 536 nucleotides HMPREF1078_RS19290 and HMPREF1078_RS20050 overlap by 4 nucleotides HMPREF1078_RS20050 and HMPREF1078_RS02855 are separated by 12 nucleotides HMPREF1078_RS02855 and HMPREF1078_RS02860 overlap by 23 nucleotides
HMPREF1078_RS19285: HMPREF1078_RS19285 - hypothetical protein, at 686,425 to 686,583
_RS19285
HMPREF1078_RS02850: HMPREF1078_RS02850 - hypothetical protein, at 686,569 to 686,757
_RS02850
HMPREF1078_RS19290: HMPREF1078_RS19290 - hypothetical protein, at 687,294 to 687,443
_RS19290
HMPREF1078_RS20050: HMPREF1078_RS20050 - hypothetical protein, at 687,440 to 687,565
_RS20050
HMPREF1078_RS02855: HMPREF1078_RS02855 - hypothetical protein, at 687,578 to 688,087
_RS02855
HMPREF1078_RS02860: HMPREF1078_RS02860 - PD-(D/E)XK nuclease-like domain-containing protein, at 688,065 to 689,270
_RS02860
Position (kb) 687
688
689 Strain fitness (log2 ratio) -2
-1
0
1
2 at 686.612 kb on - strand, within HMPREF1078_RS02850 at 686.616 kb on - strand, within HMPREF1078_RS02850 at 686.616 kb on - strand, within HMPREF1078_RS02850 at 686.616 kb on - strand, within HMPREF1078_RS02850 at 686.628 kb on + strand, within HMPREF1078_RS02850 at 686.691 kb on - strand, within HMPREF1078_RS02850 at 686.738 kb on - strand, within HMPREF1078_RS02850 at 686.862 kb on - strand at 686.895 kb on - strand at 686.975 kb on - strand at 686.975 kb on - strand at 686.975 kb on - strand at 687.044 kb on - strand at 687.057 kb on - strand at 687.104 kb on - strand at 687.126 kb on - strand at 687.128 kb on - strand at 687.217 kb on - strand at 687.221 kb on - strand at 687.252 kb on - strand at 687.256 kb on - strand at 687.256 kb on - strand at 687.256 kb on - strand at 687.367 kb on - strand, within HMPREF1078_RS19290 at 687.367 kb on - strand, within HMPREF1078_RS19290 at 687.367 kb on - strand, within HMPREF1078_RS19290 at 687.367 kb on - strand, within HMPREF1078_RS19290 at 687.413 kb on - strand, within HMPREF1078_RS19290 at 687.413 kb on - strand, within HMPREF1078_RS19290 at 687.413 kb on - strand, within HMPREF1078_RS19290 at 687.415 kb on - strand, within HMPREF1078_RS19290 at 687.415 kb on - strand, within HMPREF1078_RS19290 at 687.415 kb on - strand, within HMPREF1078_RS19290 at 687.422 kb on - strand, within HMPREF1078_RS19290 at 687.426 kb on - strand, within HMPREF1078_RS19290 at 687.426 kb on - strand, within HMPREF1078_RS19290 at 687.426 kb on - strand, within HMPREF1078_RS19290 at 687.453 kb on - strand, within HMPREF1078_RS20050 at 687.526 kb on - strand, within HMPREF1078_RS20050 at 687.652 kb on - strand, within HMPREF1078_RS02855 at 687.652 kb on - strand, within HMPREF1078_RS02855 at 687.790 kb on + strand, within HMPREF1078_RS02855 at 687.855 kb on + strand, within HMPREF1078_RS02855 at 687.857 kb on + strand, within HMPREF1078_RS02855 at 687.858 kb on - strand, within HMPREF1078_RS02855 at 687.897 kb on + strand, within HMPREF1078_RS02855 at 688.050 kb on - strand at 688.108 kb on + strand at 688.108 kb on + strand at 688.109 kb on - strand at 688.109 kb on - strand at 688.109 kb on - strand at 688.147 kb on + strand at 688.148 kb on - strand at 688.153 kb on - strand at 688.153 kb on - strand at 688.173 kb on + strand at 688.192 kb on + strand, within HMPREF1078_RS02860 at 688.193 kb on - strand, within HMPREF1078_RS02860 at 688.234 kb on - strand, within HMPREF1078_RS02860 at 688.242 kb on - strand, within HMPREF1078_RS02860 at 688.242 kb on - strand, within HMPREF1078_RS02860 at 688.242 kb on - strand, within HMPREF1078_RS02860 at 688.305 kb on + strand, within HMPREF1078_RS02860 at 688.305 kb on + strand, within HMPREF1078_RS02860 at 688.306 kb on - strand, within HMPREF1078_RS02860 at 688.417 kb on - strand, within HMPREF1078_RS02860 at 688.478 kb on - strand, within HMPREF1078_RS02860 at 688.505 kb on + strand, within HMPREF1078_RS02860 at 688.520 kb on - strand, within HMPREF1078_RS02860 at 688.659 kb on + strand, within HMPREF1078_RS02860 at 688.696 kb on + strand, within HMPREF1078_RS02860 at 688.725 kb on - strand, within HMPREF1078_RS02860 at 688.727 kb on + strand, within HMPREF1078_RS02860 at 688.727 kb on + strand, within HMPREF1078_RS02860 at 688.728 kb on - strand, within HMPREF1078_RS02860 at 688.732 kb on - strand, within HMPREF1078_RS02860 at 688.784 kb on + strand, within HMPREF1078_RS02860 at 688.785 kb on - strand, within HMPREF1078_RS02860 at 688.923 kb on - strand, within HMPREF1078_RS02860 at 688.935 kb on - strand, within HMPREF1078_RS02860 at 688.985 kb on - strand, within HMPREF1078_RS02860 at 688.985 kb on - strand, within HMPREF1078_RS02860 at 688.985 kb on - strand, within HMPREF1078_RS02860
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 686,612 - HMPREF1078_RS02850 0.23 -0.3 686,616 - HMPREF1078_RS02850 0.25 -0.7 686,616 - HMPREF1078_RS02850 0.25 +0.4 686,616 - HMPREF1078_RS02850 0.25 +0.5 686,628 + HMPREF1078_RS02850 0.31 +1.2 686,691 - HMPREF1078_RS02850 0.65 -0.6 686,738 - HMPREF1078_RS02850 0.89 -1.4 686,862 - +0.3 686,895 - +0.0 686,975 - +0.5 686,975 - -0.4 686,975 - -0.5 687,044 - -0.2 687,057 - +0.0 687,104 - +0.5 687,126 - -2.0 687,128 - -1.3 687,217 - +1.9 687,221 - +1.1 687,252 - -0.1 687,256 - -0.2 687,256 - -1.2 687,256 - +0.1 687,367 - HMPREF1078_RS19290 0.49 -2.0 687,367 - HMPREF1078_RS19290 0.49 +0.5 687,367 - HMPREF1078_RS19290 0.49 -0.5 687,367 - HMPREF1078_RS19290 0.49 -0.4 687,413 - HMPREF1078_RS19290 0.79 -1.8 687,413 - HMPREF1078_RS19290 0.79 +0.3 687,413 - HMPREF1078_RS19290 0.79 +0.0 687,415 - HMPREF1078_RS19290 0.81 -1.5 687,415 - HMPREF1078_RS19290 0.81 +0.6 687,415 - HMPREF1078_RS19290 0.81 -0.6 687,422 - HMPREF1078_RS19290 0.85 +0.6 687,426 - HMPREF1078_RS19290 0.88 -0.2 687,426 - HMPREF1078_RS19290 0.88 -0.6 687,426 - HMPREF1078_RS19290 0.88 +0.4 687,453 - HMPREF1078_RS20050 0.10 +0.7 687,526 - HMPREF1078_RS20050 0.68 -0.1 687,652 - HMPREF1078_RS02855 0.15 -0.6 687,652 - HMPREF1078_RS02855 0.15 +0.5 687,790 + HMPREF1078_RS02855 0.42 -0.2 687,855 + HMPREF1078_RS02855 0.54 -1.4 687,857 + HMPREF1078_RS02855 0.55 -2.3 687,858 - HMPREF1078_RS02855 0.55 -1.4 687,897 + HMPREF1078_RS02855 0.63 +0.0 688,050 - +0.6 688,108 + -0.5 688,108 + -0.3 688,109 - -0.1 688,109 - -0.7 688,109 - -0.4 688,147 + +0.9 688,148 - +0.4 688,153 - +1.2 688,153 - -0.1 688,173 + -1.5 688,192 + HMPREF1078_RS02860 0.11 -1.0 688,193 - HMPREF1078_RS02860 0.11 +0.8 688,234 - HMPREF1078_RS02860 0.14 +0.5 688,242 - HMPREF1078_RS02860 0.15 -0.5 688,242 - HMPREF1078_RS02860 0.15 +0.6 688,242 - HMPREF1078_RS02860 0.15 -1.4 688,305 + HMPREF1078_RS02860 0.20 -0.1 688,305 + HMPREF1078_RS02860 0.20 +0.4 688,306 - HMPREF1078_RS02860 0.20 -1.0 688,417 - HMPREF1078_RS02860 0.29 +0.6 688,478 - HMPREF1078_RS02860 0.34 -0.2 688,505 + HMPREF1078_RS02860 0.36 +1.4 688,520 - HMPREF1078_RS02860 0.38 -2.5 688,659 + HMPREF1078_RS02860 0.49 -1.0 688,696 + HMPREF1078_RS02860 0.52 +0.8 688,725 - HMPREF1078_RS02860 0.55 +0.8 688,727 + HMPREF1078_RS02860 0.55 -1.8 688,727 + HMPREF1078_RS02860 0.55 -0.6 688,728 - HMPREF1078_RS02860 0.55 +0.1 688,732 - HMPREF1078_RS02860 0.55 -0.1 688,784 + HMPREF1078_RS02860 0.60 -0.6 688,785 - HMPREF1078_RS02860 0.60 -0.0 688,923 - HMPREF1078_RS02860 0.71 -0.9 688,935 - HMPREF1078_RS02860 0.72 -0.6 688,985 - HMPREF1078_RS02860 0.76 +0.3 688,985 - HMPREF1078_RS02860 0.76 +0.2 688,985 - HMPREF1078_RS02860 0.76 -2.1
Or see this region's nucleotide sequence