Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS19095 and HMPREF1078_RS02680 are separated by 735 nucleotides HMPREF1078_RS02680 and HMPREF1078_RS02685 are separated by 25 nucleotides HMPREF1078_RS02685 and HMPREF1078_RS02690 overlap by 4 nucleotides
HMPREF1078_RS19095: HMPREF1078_RS19095 - sugar transferase, at 664,390 to 664,989
_RS19095
HMPREF1078_RS02680: HMPREF1078_RS02680 - hypothetical protein, at 665,725 to 665,874
_RS02680
HMPREF1078_RS02685: HMPREF1078_RS02685 - hypothetical protein, at 665,900 to 666,118
_RS02685
HMPREF1078_RS02690: HMPREF1078_RS02690 - hypothetical protein, at 666,115 to 666,825
_RS02690
Position (kb) 665
666 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 664.725 kb on + strand, within HMPREF1078_RS19095 at 664.811 kb on + strand, within HMPREF1078_RS19095 at 664.818 kb on - strand, within HMPREF1078_RS19095 at 664.818 kb on - strand, within HMPREF1078_RS19095 at 664.909 kb on + strand, within HMPREF1078_RS19095 at 664.947 kb on + strand at 664.966 kb on + strand at 664.967 kb on - strand at 665.021 kb on + strand at 665.047 kb on + strand at 665.048 kb on - strand at 665.106 kb on + strand at 665.107 kb on - strand at 665.140 kb on - strand at 665.141 kb on + strand at 665.141 kb on + strand at 665.141 kb on + strand at 665.141 kb on + strand at 665.241 kb on - strand at 665.285 kb on - strand at 665.306 kb on + strand at 665.307 kb on - strand at 665.331 kb on + strand at 665.351 kb on + strand at 665.352 kb on - strand at 665.401 kb on - strand at 665.401 kb on - strand at 665.401 kb on - strand at 665.406 kb on + strand at 665.406 kb on + strand at 665.408 kb on + strand at 665.427 kb on + strand at 665.496 kb on + strand at 665.503 kb on + strand at 665.503 kb on + strand at 665.503 kb on + strand at 665.503 kb on + strand at 665.504 kb on - strand at 665.504 kb on - strand at 665.504 kb on - strand at 665.638 kb on + strand at 665.639 kb on - strand at 665.674 kb on + strand at 665.708 kb on + strand at 665.714 kb on - strand at 665.779 kb on + strand, within HMPREF1078_RS02680 at 665.842 kb on + strand, within HMPREF1078_RS02680 at 665.844 kb on - strand, within HMPREF1078_RS02680 at 665.880 kb on + strand at 665.880 kb on + strand at 665.882 kb on + strand at 665.883 kb on - strand at 665.954 kb on + strand, within HMPREF1078_RS02685 at 665.954 kb on + strand, within HMPREF1078_RS02685 at 665.954 kb on + strand, within HMPREF1078_RS02685 at 665.955 kb on - strand, within HMPREF1078_RS02685 at 666.024 kb on + strand, within HMPREF1078_RS02685 at 666.053 kb on + strand, within HMPREF1078_RS02685 at 666.136 kb on + strand at 666.136 kb on + strand at 666.194 kb on - strand, within HMPREF1078_RS02690 at 666.262 kb on + strand, within HMPREF1078_RS02690 at 666.339 kb on - strand, within HMPREF1078_RS02690 at 666.356 kb on + strand, within HMPREF1078_RS02690 at 666.356 kb on + strand, within HMPREF1078_RS02690 at 666.356 kb on + strand, within HMPREF1078_RS02690 at 666.357 kb on - strand, within HMPREF1078_RS02690 at 666.357 kb on - strand, within HMPREF1078_RS02690 at 666.357 kb on - strand, within HMPREF1078_RS02690 at 666.393 kb on - strand, within HMPREF1078_RS02690 at 666.393 kb on - strand, within HMPREF1078_RS02690 at 666.487 kb on + strand, within HMPREF1078_RS02690 at 666.543 kb on - strand, within HMPREF1078_RS02690 at 666.577 kb on - strand, within HMPREF1078_RS02690 at 666.690 kb on + strand, within HMPREF1078_RS02690 at 666.691 kb on - strand, within HMPREF1078_RS02690 at 666.694 kb on + strand, within HMPREF1078_RS02690 at 666.810 kb on + strand at 666.828 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 664,725 + HMPREF1078_RS19095 0.56 +1.4 664,811 + HMPREF1078_RS19095 0.70 -0.3 664,818 - HMPREF1078_RS19095 0.71 -0.6 664,818 - HMPREF1078_RS19095 0.71 +0.0 664,909 + HMPREF1078_RS19095 0.86 +0.1 664,947 + +0.4 664,966 + -0.8 664,967 - +0.2 665,021 + +0.7 665,047 + +0.9 665,048 - -2.6 665,106 + -0.3 665,107 - -0.3 665,140 - +0.2 665,141 + -0.4 665,141 + +0.1 665,141 + -1.7 665,141 + +0.7 665,241 - -0.5 665,285 - -0.4 665,306 + +0.4 665,307 - -0.5 665,331 + +0.3 665,351 + -0.0 665,352 - -1.3 665,401 - +0.7 665,401 - +1.4 665,401 - -0.1 665,406 + +0.0 665,406 + -1.1 665,408 + -1.9 665,427 + +0.5 665,496 + -1.9 665,503 + -0.8 665,503 + -1.2 665,503 + +3.4 665,503 + -1.8 665,504 - +1.3 665,504 - -0.1 665,504 - +0.0 665,638 + -0.7 665,639 - +0.6 665,674 + -3.2 665,708 + +0.0 665,714 - +0.0 665,779 + HMPREF1078_RS02680 0.36 -1.3 665,842 + HMPREF1078_RS02680 0.78 -0.0 665,844 - HMPREF1078_RS02680 0.79 -0.8 665,880 + +0.8 665,880 + +0.5 665,882 + -0.4 665,883 - -0.0 665,954 + HMPREF1078_RS02685 0.25 -0.4 665,954 + HMPREF1078_RS02685 0.25 +0.3 665,954 + HMPREF1078_RS02685 0.25 -1.5 665,955 - HMPREF1078_RS02685 0.25 +0.7 666,024 + HMPREF1078_RS02685 0.57 -1.1 666,053 + HMPREF1078_RS02685 0.70 -2.7 666,136 + -0.6 666,136 + -0.4 666,194 - HMPREF1078_RS02690 0.11 +0.0 666,262 + HMPREF1078_RS02690 0.21 -1.0 666,339 - HMPREF1078_RS02690 0.32 +0.8 666,356 + HMPREF1078_RS02690 0.34 +0.7 666,356 + HMPREF1078_RS02690 0.34 -2.5 666,356 + HMPREF1078_RS02690 0.34 +0.0 666,357 - HMPREF1078_RS02690 0.34 +0.7 666,357 - HMPREF1078_RS02690 0.34 +0.3 666,357 - HMPREF1078_RS02690 0.34 +0.0 666,393 - HMPREF1078_RS02690 0.39 -1.5 666,393 - HMPREF1078_RS02690 0.39 +1.8 666,487 + HMPREF1078_RS02690 0.52 +1.3 666,543 - HMPREF1078_RS02690 0.60 -0.1 666,577 - HMPREF1078_RS02690 0.65 -0.3 666,690 + HMPREF1078_RS02690 0.81 -1.5 666,691 - HMPREF1078_RS02690 0.81 +0.1 666,694 + HMPREF1078_RS02690 0.81 -1.0 666,810 + -0.6 666,828 + +1.0
Or see this region's nucleotide sequence