Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS02510

Experiment: marine_broth_2216 1 x (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS02505 and HMPREF1078_RS02510 are separated by 98 nucleotidesHMPREF1078_RS02510 and HMPREF1078_RS02515 are separated by 12 nucleotides HMPREF1078_RS02505: HMPREF1078_RS02505 - aldehyde dehydrogenase, at 623,693 to 625,129 _RS02505 HMPREF1078_RS02510: HMPREF1078_RS02510 - NAD(P)H-dependent oxidoreductase subunit E, at 625,228 to 625,716 _RS02510 HMPREF1078_RS02515: HMPREF1078_RS02515 - NADH-dependent [FeFe] hydrogenase, group A6, at 625,729 to 627,519 _RS02515 Position (kb) 625 626Strain fitness (log2 ratio) -2 -1 0 1 2at 624.240 kb on - strand, within HMPREF1078_RS02505at 624.318 kb on + strand, within HMPREF1078_RS02505at 624.319 kb on - strand, within HMPREF1078_RS02505at 624.375 kb on + strand, within HMPREF1078_RS02505at 624.376 kb on - strand, within HMPREF1078_RS02505at 624.412 kb on + strand, within HMPREF1078_RS02505at 624.413 kb on - strand, within HMPREF1078_RS02505at 624.480 kb on + strand, within HMPREF1078_RS02505at 624.481 kb on - strand, within HMPREF1078_RS02505at 624.538 kb on + strand, within HMPREF1078_RS02505at 624.538 kb on + strand, within HMPREF1078_RS02505at 624.538 kb on + strand, within HMPREF1078_RS02505at 624.539 kb on - strand, within HMPREF1078_RS02505at 624.539 kb on - strand, within HMPREF1078_RS02505at 624.539 kb on - strand, within HMPREF1078_RS02505at 624.566 kb on - strand, within HMPREF1078_RS02505at 624.580 kb on + strand, within HMPREF1078_RS02505at 624.581 kb on - strand, within HMPREF1078_RS02505at 624.738 kb on + strand, within HMPREF1078_RS02505at 624.771 kb on - strand, within HMPREF1078_RS02505at 624.865 kb on + strand, within HMPREF1078_RS02505at 624.865 kb on + strand, within HMPREF1078_RS02505at 624.866 kb on - strand, within HMPREF1078_RS02505at 624.866 kb on - strand, within HMPREF1078_RS02505at 624.866 kb on - strand, within HMPREF1078_RS02505at 624.867 kb on - strand, within HMPREF1078_RS02505at 624.989 kb on + strandat 624.990 kb on - strandat 624.990 kb on - strandat 624.990 kb on - strandat 624.991 kb on + strandat 624.992 kb on - strandat 624.992 kb on - strandat 625.016 kb on - strandat 625.016 kb on - strandat 625.113 kb on + strandat 625.143 kb on + strandat 625.145 kb on + strandat 625.229 kb on + strandat 625.231 kb on + strandat 625.231 kb on + strandat 625.232 kb on - strandat 625.232 kb on - strandat 625.250 kb on + strandat 625.264 kb on - strandat 625.447 kb on + strand, within HMPREF1078_RS02510at 625.452 kb on - strand, within HMPREF1078_RS02510at 625.452 kb on - strand, within HMPREF1078_RS02510at 625.479 kb on + strand, within HMPREF1078_RS02510at 625.479 kb on + strand, within HMPREF1078_RS02510at 625.479 kb on + strand, within HMPREF1078_RS02510at 625.480 kb on - strand, within HMPREF1078_RS02510at 625.484 kb on + strand, within HMPREF1078_RS02510at 625.507 kb on - strand, within HMPREF1078_RS02510at 625.607 kb on - strand, within HMPREF1078_RS02510at 625.628 kb on - strand, within HMPREF1078_RS02510at 625.656 kb on + strand, within HMPREF1078_RS02510at 625.762 kb on - strandat 625.792 kb on - strandat 625.835 kb on + strandat 625.857 kb on + strandat 625.857 kb on + strandat 625.859 kb on + strandat 625.860 kb on - strandat 625.977 kb on + strand, within HMPREF1078_RS02515at 625.978 kb on - strand, within HMPREF1078_RS02515at 625.999 kb on - strand, within HMPREF1078_RS02515at 625.999 kb on - strand, within HMPREF1078_RS02515at 626.015 kb on + strand, within HMPREF1078_RS02515at 626.182 kb on - strand, within HMPREF1078_RS02515at 626.185 kb on + strand, within HMPREF1078_RS02515at 626.193 kb on - strand, within HMPREF1078_RS02515at 626.348 kb on + strand, within HMPREF1078_RS02515at 626.408 kb on + strand, within HMPREF1078_RS02515at 626.409 kb on - strand, within HMPREF1078_RS02515at 626.524 kb on - strand, within HMPREF1078_RS02515at 626.715 kb on - strand, within HMPREF1078_RS02515

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C)
remove
624,240 - HMPREF1078_RS02505 0.38 +1.3
624,318 + HMPREF1078_RS02505 0.43 +0.3
624,319 - HMPREF1078_RS02505 0.44 +0.3
624,375 + HMPREF1078_RS02505 0.47 +0.4
624,376 - HMPREF1078_RS02505 0.48 +0.5
624,412 + HMPREF1078_RS02505 0.50 -1.4
624,413 - HMPREF1078_RS02505 0.50 -0.4
624,480 + HMPREF1078_RS02505 0.55 -0.1
624,481 - HMPREF1078_RS02505 0.55 -0.3
624,538 + HMPREF1078_RS02505 0.59 -1.7
624,538 + HMPREF1078_RS02505 0.59 +0.2
624,538 + HMPREF1078_RS02505 0.59 +1.3
624,539 - HMPREF1078_RS02505 0.59 +0.2
624,539 - HMPREF1078_RS02505 0.59 +0.8
624,539 - HMPREF1078_RS02505 0.59 +0.4
624,566 - HMPREF1078_RS02505 0.61 -0.2
624,580 + HMPREF1078_RS02505 0.62 -0.1
624,581 - HMPREF1078_RS02505 0.62 -0.4
624,738 + HMPREF1078_RS02505 0.73 +0.4
624,771 - HMPREF1078_RS02505 0.75 -0.2
624,865 + HMPREF1078_RS02505 0.82 +0.2
624,865 + HMPREF1078_RS02505 0.82 -0.8
624,866 - HMPREF1078_RS02505 0.82 -0.5
624,866 - HMPREF1078_RS02505 0.82 +1.0
624,866 - HMPREF1078_RS02505 0.82 +1.0
624,867 - HMPREF1078_RS02505 0.82 -0.6
624,989 + +1.6
624,990 - -0.6
624,990 - -0.4
624,990 - +2.1
624,991 + +1.2
624,992 - -0.0
624,992 - -1.2
625,016 - -0.0
625,016 - +0.5
625,113 + -0.6
625,143 + +1.0
625,145 + +0.8
625,229 + +1.3
625,231 + -0.1
625,231 + -0.4
625,232 - -1.0
625,232 - -0.9
625,250 + -0.0
625,264 - -0.2
625,447 + HMPREF1078_RS02510 0.45 +1.0
625,452 - HMPREF1078_RS02510 0.46 -0.9
625,452 - HMPREF1078_RS02510 0.46 -1.3
625,479 + HMPREF1078_RS02510 0.51 -0.2
625,479 + HMPREF1078_RS02510 0.51 -0.7
625,479 + HMPREF1078_RS02510 0.51 -0.8
625,480 - HMPREF1078_RS02510 0.52 -1.2
625,484 + HMPREF1078_RS02510 0.52 -0.6
625,507 - HMPREF1078_RS02510 0.57 -0.9
625,607 - HMPREF1078_RS02510 0.78 +0.6
625,628 - HMPREF1078_RS02510 0.82 +0.0
625,656 + HMPREF1078_RS02510 0.88 -1.8
625,762 - +0.1
625,792 - -0.2
625,835 + +0.2
625,857 + +0.6
625,857 + -1.4
625,859 + -0.7
625,860 - -1.2
625,977 + HMPREF1078_RS02515 0.14 -0.5
625,978 - HMPREF1078_RS02515 0.14 -0.6
625,999 - HMPREF1078_RS02515 0.15 +0.1
625,999 - HMPREF1078_RS02515 0.15 -1.3
626,015 + HMPREF1078_RS02515 0.16 +0.4
626,182 - HMPREF1078_RS02515 0.25 -2.2
626,185 + HMPREF1078_RS02515 0.25 -1.3
626,193 - HMPREF1078_RS02515 0.26 -0.4
626,348 + HMPREF1078_RS02515 0.35 -2.1
626,408 + HMPREF1078_RS02515 0.38 +0.3
626,409 - HMPREF1078_RS02515 0.38 -0.1
626,524 - HMPREF1078_RS02515 0.44 +1.9
626,715 - HMPREF1078_RS02515 0.55 -1.0

Or see this region's nucleotide sequence