Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02385 and HMPREF1078_RS02390 are separated by 184 nucleotides HMPREF1078_RS02390 and HMPREF1078_RS02395 are separated by 41 nucleotides
HMPREF1078_RS02385: HMPREF1078_RS02385 - recombinase family protein, at 582,976 to 583,605
_RS02385
HMPREF1078_RS02390: HMPREF1078_RS02390 - tetratricopeptide repeat protein, at 583,790 to 585,016
_RS02390
HMPREF1078_RS02395: HMPREF1078_RS02395 - DNA gyrase subunit A, at 585,058 to 587,667
_RS02395
Position (kb) 583
584
585
586 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 582.825 kb on - strand at 582.841 kb on + strand at 582.845 kb on + strand at 582.846 kb on - strand at 582.877 kb on - strand at 582.877 kb on - strand at 582.885 kb on + strand at 582.885 kb on + strand at 582.885 kb on + strand at 582.885 kb on + strand at 582.885 kb on + strand at 582.886 kb on - strand at 582.886 kb on - strand at 582.886 kb on - strand at 582.886 kb on - strand at 582.886 kb on - strand at 582.886 kb on - strand at 582.887 kb on + strand at 582.935 kb on + strand at 582.937 kb on + strand at 582.938 kb on - strand at 582.939 kb on + strand at 582.939 kb on + strand at 582.989 kb on - strand at 582.992 kb on + strand at 582.993 kb on - strand at 582.993 kb on - strand at 582.997 kb on - strand at 582.997 kb on - strand at 582.997 kb on - strand at 582.997 kb on - strand at 583.134 kb on - strand, within HMPREF1078_RS02385 at 583.159 kb on - strand, within HMPREF1078_RS02385 at 583.159 kb on - strand, within HMPREF1078_RS02385 at 583.209 kb on - strand, within HMPREF1078_RS02385 at 583.209 kb on - strand, within HMPREF1078_RS02385 at 583.231 kb on - strand, within HMPREF1078_RS02385 at 583.231 kb on - strand, within HMPREF1078_RS02385 at 583.253 kb on - strand, within HMPREF1078_RS02385 at 583.253 kb on - strand, within HMPREF1078_RS02385 at 583.258 kb on - strand, within HMPREF1078_RS02385 at 583.258 kb on - strand, within HMPREF1078_RS02385 at 583.312 kb on - strand, within HMPREF1078_RS02385 at 583.492 kb on + strand, within HMPREF1078_RS02385 at 583.492 kb on + strand, within HMPREF1078_RS02385 at 583.492 kb on + strand, within HMPREF1078_RS02385 at 583.492 kb on + strand, within HMPREF1078_RS02385 at 583.492 kb on + strand, within HMPREF1078_RS02385 at 583.492 kb on + strand, within HMPREF1078_RS02385 at 583.493 kb on - strand, within HMPREF1078_RS02385 at 583.493 kb on - strand, within HMPREF1078_RS02385 at 583.493 kb on - strand, within HMPREF1078_RS02385 at 583.510 kb on + strand, within HMPREF1078_RS02385 at 583.513 kb on + strand, within HMPREF1078_RS02385 at 583.513 kb on + strand, within HMPREF1078_RS02385 at 583.515 kb on + strand, within HMPREF1078_RS02385 at 583.557 kb on + strand at 583.557 kb on + strand at 583.558 kb on - strand at 583.559 kb on + strand at 583.564 kb on - strand at 583.568 kb on + strand at 583.603 kb on + strand at 583.604 kb on - strand at 583.635 kb on + strand at 583.635 kb on + strand at 583.667 kb on + strand at 583.667 kb on + strand at 583.668 kb on - strand at 583.670 kb on + strand at 583.671 kb on - strand at 583.703 kb on - strand at 583.705 kb on + strand at 583.705 kb on + strand at 583.706 kb on - strand at 583.746 kb on + strand at 583.746 kb on + strand at 583.746 kb on + strand at 583.746 kb on + strand at 583.746 kb on + strand at 583.747 kb on - strand at 583.747 kb on - strand at 583.747 kb on - strand at 583.747 kb on - strand at 583.747 kb on - strand at 583.747 kb on - strand at 583.748 kb on + strand at 583.748 kb on + strand at 583.749 kb on - strand at 583.749 kb on - strand at 583.749 kb on - strand at 583.755 kb on + strand at 583.755 kb on + strand at 583.766 kb on - strand at 583.780 kb on - strand at 583.788 kb on + strand at 583.788 kb on + strand at 583.789 kb on - strand at 583.791 kb on + strand at 583.796 kb on - strand at 583.814 kb on - strand at 583.845 kb on + strand at 583.848 kb on + strand at 583.848 kb on + strand at 583.849 kb on - strand at 583.849 kb on - strand at 583.853 kb on - strand at 583.853 kb on - strand at 583.909 kb on + strand at 583.910 kb on - strand at 583.911 kb on + strand at 583.912 kb on - strand at 583.914 kb on + strand, within HMPREF1078_RS02390 at 583.914 kb on + strand, within HMPREF1078_RS02390 at 583.914 kb on + strand, within HMPREF1078_RS02390 at 583.915 kb on - strand, within HMPREF1078_RS02390 at 583.966 kb on - strand, within HMPREF1078_RS02390 at 583.972 kb on + strand, within HMPREF1078_RS02390 at 583.975 kb on + strand, within HMPREF1078_RS02390 at 583.976 kb on - strand, within HMPREF1078_RS02390 at 583.988 kb on - strand, within HMPREF1078_RS02390 at 584.022 kb on + strand, within HMPREF1078_RS02390 at 584.025 kb on + strand, within HMPREF1078_RS02390 at 584.025 kb on + strand, within HMPREF1078_RS02390 at 584.029 kb on + strand, within HMPREF1078_RS02390 at 584.042 kb on - strand, within HMPREF1078_RS02390 at 584.042 kb on - strand, within HMPREF1078_RS02390 at 584.076 kb on - strand, within HMPREF1078_RS02390 at 584.110 kb on - strand, within HMPREF1078_RS02390 at 584.144 kb on + strand, within HMPREF1078_RS02390 at 584.145 kb on - strand, within HMPREF1078_RS02390 at 584.151 kb on + strand, within HMPREF1078_RS02390 at 584.152 kb on - strand, within HMPREF1078_RS02390 at 584.152 kb on - strand, within HMPREF1078_RS02390 at 584.218 kb on + strand, within HMPREF1078_RS02390 at 584.226 kb on + strand, within HMPREF1078_RS02390 at 584.226 kb on + strand, within HMPREF1078_RS02390 at 584.227 kb on - strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.236 kb on + strand, within HMPREF1078_RS02390 at 584.236 kb on + strand, within HMPREF1078_RS02390 at 584.236 kb on + strand, within HMPREF1078_RS02390 at 584.237 kb on - strand, within HMPREF1078_RS02390 at 584.248 kb on + strand, within HMPREF1078_RS02390 at 584.311 kb on + strand, within HMPREF1078_RS02390 at 584.312 kb on - strand, within HMPREF1078_RS02390 at 584.349 kb on + strand, within HMPREF1078_RS02390 at 584.359 kb on - strand, within HMPREF1078_RS02390 at 584.365 kb on - strand, within HMPREF1078_RS02390 at 584.373 kb on + strand, within HMPREF1078_RS02390 at 584.374 kb on - strand, within HMPREF1078_RS02390 at 584.374 kb on - strand, within HMPREF1078_RS02390 at 584.435 kb on - strand, within HMPREF1078_RS02390 at 584.439 kb on - strand, within HMPREF1078_RS02390 at 584.461 kb on - strand, within HMPREF1078_RS02390 at 584.482 kb on + strand, within HMPREF1078_RS02390 at 584.538 kb on - strand, within HMPREF1078_RS02390 at 584.541 kb on + strand, within HMPREF1078_RS02390 at 584.569 kb on + strand, within HMPREF1078_RS02390 at 584.570 kb on - strand, within HMPREF1078_RS02390 at 584.571 kb on + strand, within HMPREF1078_RS02390 at 584.572 kb on - strand, within HMPREF1078_RS02390 at 584.589 kb on + strand, within HMPREF1078_RS02390 at 584.590 kb on - strand, within HMPREF1078_RS02390 at 584.592 kb on + strand, within HMPREF1078_RS02390 at 584.613 kb on + strand, within HMPREF1078_RS02390 at 584.614 kb on - strand, within HMPREF1078_RS02390 at 584.615 kb on + strand, within HMPREF1078_RS02390 at 584.615 kb on + strand, within HMPREF1078_RS02390 at 584.615 kb on + strand, within HMPREF1078_RS02390 at 584.615 kb on + strand, within HMPREF1078_RS02390 at 584.615 kb on + strand, within HMPREF1078_RS02390 at 584.615 kb on + strand, within HMPREF1078_RS02390 at 584.616 kb on + strand, within HMPREF1078_RS02390 at 584.616 kb on - strand, within HMPREF1078_RS02390 at 584.616 kb on - strand, within HMPREF1078_RS02390 at 584.616 kb on - strand, within HMPREF1078_RS02390 at 584.616 kb on - strand, within HMPREF1078_RS02390 at 584.616 kb on - strand, within HMPREF1078_RS02390 at 584.616 kb on - strand, within HMPREF1078_RS02390 at 584.616 kb on - strand, within HMPREF1078_RS02390 at 584.635 kb on + strand, within HMPREF1078_RS02390 at 584.645 kb on - strand, within HMPREF1078_RS02390 at 584.645 kb on - strand, within HMPREF1078_RS02390 at 584.660 kb on - strand, within HMPREF1078_RS02390 at 584.703 kb on + strand, within HMPREF1078_RS02390 at 584.704 kb on - strand, within HMPREF1078_RS02390 at 584.724 kb on - strand, within HMPREF1078_RS02390 at 584.728 kb on + strand, within HMPREF1078_RS02390 at 584.729 kb on - strand, within HMPREF1078_RS02390 at 584.729 kb on - strand, within HMPREF1078_RS02390 at 584.733 kb on + strand, within HMPREF1078_RS02390 at 584.734 kb on - strand, within HMPREF1078_RS02390 at 584.744 kb on + strand, within HMPREF1078_RS02390 at 584.749 kb on + strand, within HMPREF1078_RS02390 at 584.750 kb on - strand, within HMPREF1078_RS02390 at 584.786 kb on - strand, within HMPREF1078_RS02390 at 584.832 kb on + strand, within HMPREF1078_RS02390 at 584.915 kb on - strand at 584.929 kb on + strand at 584.987 kb on + strand at 584.987 kb on + strand at 584.988 kb on - strand at 584.988 kb on - strand at 585.002 kb on + strand at 585.037 kb on + strand at 585.037 kb on + strand at 585.037 kb on + strand at 585.038 kb on - strand at 585.038 kb on - strand at 585.040 kb on + strand at 585.059 kb on + strand at 585.172 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 582,825 - -0.7 582,841 + -0.5 582,845 + +0.5 582,846 - -0.4 582,877 - -0.4 582,877 - +0.6 582,885 + -0.0 582,885 + +1.1 582,885 + -0.1 582,885 + -0.8 582,885 + +0.2 582,886 - +1.2 582,886 - -0.2 582,886 - -0.0 582,886 - +2.4 582,886 - -0.3 582,886 - +0.7 582,887 + -1.1 582,935 + -0.7 582,937 + -0.2 582,938 - +1.0 582,939 + -0.5 582,939 + -0.6 582,989 - -0.0 582,992 + -2.7 582,993 - +2.0 582,993 - +0.9 582,997 - +0.1 582,997 - +2.2 582,997 - -0.2 582,997 - -0.7 583,134 - HMPREF1078_RS02385 0.25 +1.4 583,159 - HMPREF1078_RS02385 0.29 -1.0 583,159 - HMPREF1078_RS02385 0.29 -1.9 583,209 - HMPREF1078_RS02385 0.37 +0.4 583,209 - HMPREF1078_RS02385 0.37 +0.4 583,231 - HMPREF1078_RS02385 0.40 -0.2 583,231 - HMPREF1078_RS02385 0.40 +1.3 583,253 - HMPREF1078_RS02385 0.44 +0.1 583,253 - HMPREF1078_RS02385 0.44 -1.7 583,258 - HMPREF1078_RS02385 0.45 -1.2 583,258 - HMPREF1078_RS02385 0.45 +0.4 583,312 - HMPREF1078_RS02385 0.53 -0.7 583,492 + HMPREF1078_RS02385 0.82 +0.0 583,492 + HMPREF1078_RS02385 0.82 -0.9 583,492 + HMPREF1078_RS02385 0.82 -0.6 583,492 + HMPREF1078_RS02385 0.82 +0.0 583,492 + HMPREF1078_RS02385 0.82 -0.6 583,492 + HMPREF1078_RS02385 0.82 -0.2 583,493 - HMPREF1078_RS02385 0.82 -2.2 583,493 - HMPREF1078_RS02385 0.82 -2.0 583,493 - HMPREF1078_RS02385 0.82 +0.0 583,510 + HMPREF1078_RS02385 0.85 +0.3 583,513 + HMPREF1078_RS02385 0.85 -1.3 583,513 + HMPREF1078_RS02385 0.85 +2.4 583,515 + HMPREF1078_RS02385 0.86 +0.3 583,557 + -0.6 583,557 + +0.2 583,558 - +1.1 583,559 + -0.6 583,564 - -0.7 583,568 + +0.1 583,603 + +1.0 583,604 - -0.6 583,635 + -0.4 583,635 + +0.8 583,667 + -0.2 583,667 + -1.0 583,668 - +0.2 583,670 + -0.1 583,671 - +0.8 583,703 - -0.1 583,705 + +0.7 583,705 + -0.2 583,706 - -1.5 583,746 + -1.2 583,746 + -1.7 583,746 + -0.2 583,746 + -0.6 583,746 + +0.1 583,747 - -0.6 583,747 - -1.8 583,747 - -1.9 583,747 - -0.9 583,747 - +0.1 583,747 - -0.0 583,748 + -0.7 583,748 + -0.1 583,749 - -1.4 583,749 - +1.4 583,749 - -0.6 583,755 + +0.4 583,755 + -0.5 583,766 - -1.0 583,780 - -0.9 583,788 + +0.1 583,788 + +0.6 583,789 - -0.2 583,791 + +0.6 583,796 - -0.5 583,814 - -1.4 583,845 + -0.9 583,848 + -0.6 583,848 + -1.4 583,849 - -0.9 583,849 - +0.7 583,853 - +1.4 583,853 - -0.5 583,909 + -1.5 583,910 - -0.5 583,911 + -1.5 583,912 - -0.2 583,914 + HMPREF1078_RS02390 0.10 -0.2 583,914 + HMPREF1078_RS02390 0.10 -1.1 583,914 + HMPREF1078_RS02390 0.10 -0.9 583,915 - HMPREF1078_RS02390 0.10 -2.0 583,966 - HMPREF1078_RS02390 0.14 -1.5 583,972 + HMPREF1078_RS02390 0.15 -2.2 583,975 + HMPREF1078_RS02390 0.15 +0.3 583,976 - HMPREF1078_RS02390 0.15 -1.3 583,988 - HMPREF1078_RS02390 0.16 +0.8 584,022 + HMPREF1078_RS02390 0.19 -1.2 584,025 + HMPREF1078_RS02390 0.19 +0.1 584,025 + HMPREF1078_RS02390 0.19 -0.2 584,029 + HMPREF1078_RS02390 0.19 +0.8 584,042 - HMPREF1078_RS02390 0.21 -1.1 584,042 - HMPREF1078_RS02390 0.21 -0.7 584,076 - HMPREF1078_RS02390 0.23 -0.7 584,110 - HMPREF1078_RS02390 0.26 -0.9 584,144 + HMPREF1078_RS02390 0.29 -1.5 584,145 - HMPREF1078_RS02390 0.29 -0.4 584,151 + HMPREF1078_RS02390 0.29 -1.4 584,152 - HMPREF1078_RS02390 0.30 +0.2 584,152 - HMPREF1078_RS02390 0.30 -1.5 584,218 + HMPREF1078_RS02390 0.35 +1.2 584,226 + HMPREF1078_RS02390 0.36 -2.5 584,226 + HMPREF1078_RS02390 0.36 -2.0 584,227 - HMPREF1078_RS02390 0.36 -0.2 584,232 + HMPREF1078_RS02390 0.36 -0.4 584,232 + HMPREF1078_RS02390 0.36 +0.3 584,232 + HMPREF1078_RS02390 0.36 -1.2 584,232 + HMPREF1078_RS02390 0.36 -1.3 584,232 + HMPREF1078_RS02390 0.36 +0.1 584,232 + HMPREF1078_RS02390 0.36 -0.3 584,232 + HMPREF1078_RS02390 0.36 -0.2 584,232 + HMPREF1078_RS02390 0.36 -1.9 584,232 + HMPREF1078_RS02390 0.36 -1.8 584,233 - HMPREF1078_RS02390 0.36 +0.0 584,233 - HMPREF1078_RS02390 0.36 -2.4 584,233 - HMPREF1078_RS02390 0.36 -1.5 584,233 - HMPREF1078_RS02390 0.36 +0.4 584,233 - HMPREF1078_RS02390 0.36 -0.5 584,233 - HMPREF1078_RS02390 0.36 -2.2 584,233 - HMPREF1078_RS02390 0.36 -0.7 584,233 - HMPREF1078_RS02390 0.36 -1.6 584,233 - HMPREF1078_RS02390 0.36 -2.2 584,233 - HMPREF1078_RS02390 0.36 -2.2 584,233 - HMPREF1078_RS02390 0.36 -0.7 584,233 - HMPREF1078_RS02390 0.36 -0.9 584,233 - HMPREF1078_RS02390 0.36 -1.7 584,233 - HMPREF1078_RS02390 0.36 -0.8 584,233 - HMPREF1078_RS02390 0.36 -1.2 584,236 + HMPREF1078_RS02390 0.36 -0.7 584,236 + HMPREF1078_RS02390 0.36 -0.5 584,236 + HMPREF1078_RS02390 0.36 -0.6 584,237 - HMPREF1078_RS02390 0.36 +0.1 584,248 + HMPREF1078_RS02390 0.37 +0.4 584,311 + HMPREF1078_RS02390 0.42 -1.0 584,312 - HMPREF1078_RS02390 0.43 -1.7 584,349 + HMPREF1078_RS02390 0.46 -1.6 584,359 - HMPREF1078_RS02390 0.46 -0.6 584,365 - HMPREF1078_RS02390 0.47 -3.4 584,373 + HMPREF1078_RS02390 0.48 -1.5 584,374 - HMPREF1078_RS02390 0.48 -0.6 584,374 - HMPREF1078_RS02390 0.48 -1.7 584,435 - HMPREF1078_RS02390 0.53 -0.6 584,439 - HMPREF1078_RS02390 0.53 +3.4 584,461 - HMPREF1078_RS02390 0.55 -2.2 584,482 + HMPREF1078_RS02390 0.56 -0.4 584,538 - HMPREF1078_RS02390 0.61 -1.0 584,541 + HMPREF1078_RS02390 0.61 -1.0 584,569 + HMPREF1078_RS02390 0.63 +2.4 584,570 - HMPREF1078_RS02390 0.64 +1.7 584,571 + HMPREF1078_RS02390 0.64 -1.6 584,572 - HMPREF1078_RS02390 0.64 +1.4 584,589 + HMPREF1078_RS02390 0.65 -2.0 584,590 - HMPREF1078_RS02390 0.65 +0.4 584,592 + HMPREF1078_RS02390 0.65 -0.9 584,613 + HMPREF1078_RS02390 0.67 -2.2 584,614 - HMPREF1078_RS02390 0.67 -0.7 584,615 + HMPREF1078_RS02390 0.67 -1.9 584,615 + HMPREF1078_RS02390 0.67 +0.3 584,615 + HMPREF1078_RS02390 0.67 +0.1 584,615 + HMPREF1078_RS02390 0.67 -0.0 584,615 + HMPREF1078_RS02390 0.67 -1.4 584,615 + HMPREF1078_RS02390 0.67 +0.8 584,616 + HMPREF1078_RS02390 0.67 -0.7 584,616 - HMPREF1078_RS02390 0.67 -0.6 584,616 - HMPREF1078_RS02390 0.67 -1.2 584,616 - HMPREF1078_RS02390 0.67 -0.4 584,616 - HMPREF1078_RS02390 0.67 +0.0 584,616 - HMPREF1078_RS02390 0.67 -1.0 584,616 - HMPREF1078_RS02390 0.67 +0.1 584,616 - HMPREF1078_RS02390 0.67 +0.1 584,635 + HMPREF1078_RS02390 0.69 -1.0 584,645 - HMPREF1078_RS02390 0.70 +0.1 584,645 - HMPREF1078_RS02390 0.70 -2.1 584,660 - HMPREF1078_RS02390 0.71 -1.9 584,703 + HMPREF1078_RS02390 0.74 -0.6 584,704 - HMPREF1078_RS02390 0.74 -1.6 584,724 - HMPREF1078_RS02390 0.76 -0.6 584,728 + HMPREF1078_RS02390 0.76 +0.7 584,729 - HMPREF1078_RS02390 0.77 -1.3 584,729 - HMPREF1078_RS02390 0.77 +0.1 584,733 + HMPREF1078_RS02390 0.77 +1.7 584,734 - HMPREF1078_RS02390 0.77 -0.2 584,744 + HMPREF1078_RS02390 0.78 -1.1 584,749 + HMPREF1078_RS02390 0.78 -1.8 584,750 - HMPREF1078_RS02390 0.78 -2.6 584,786 - HMPREF1078_RS02390 0.81 -0.8 584,832 + HMPREF1078_RS02390 0.85 +0.7 584,915 - -1.3 584,929 + +2.2 584,987 + -1.4 584,987 + +0.4 584,988 - -1.0 584,988 - -0.7 585,002 + +1.4 585,037 + +1.0 585,037 + +0.1 585,037 + -0.2 585,038 - -0.8 585,038 - +0.7 585,040 + -0.4 585,059 + -0.6 585,172 + -0.2
Or see this region's nucleotide sequence