Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS02130

Experiment: marine_broth_2216 1 x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS19700 and HMPREF1078_RS02130 are separated by 6 nucleotidesHMPREF1078_RS02130 and HMPREF1078_RS02135 are separated by 200 nucleotides HMPREF1078_RS19700: HMPREF1078_RS19700 - DDE transposase, at 527,133 to 527,996 _RS19700 HMPREF1078_RS02130: HMPREF1078_RS02130 - hybrid sensor histidine kinase/response regulator, at 528,003 to 529,121 _RS02130 HMPREF1078_RS02135: HMPREF1078_RS02135 - alpha-L-arabinofuranosidase C-terminal domain-containing protein, at 529,322 to 531,772 _RS02135 Position (kb) 528 529 530Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 527.008 kb on - strandat 527.008 kb on - strandat 527.010 kb on - strandat 527.010 kb on - strandat 527.010 kb on - strandat 527.031 kb on + strandat 527.031 kb on + strandat 527.060 kb on - strandat 527.170 kb on - strandat 527.179 kb on - strandat 527.197 kb on - strandat 527.261 kb on - strand, within HMPREF1078_RS19700at 527.261 kb on - strand, within HMPREF1078_RS19700at 527.261 kb on - strand, within HMPREF1078_RS19700at 527.396 kb on + strand, within HMPREF1078_RS19700at 527.396 kb on + strand, within HMPREF1078_RS19700at 527.406 kb on - strand, within HMPREF1078_RS19700at 527.432 kb on + strand, within HMPREF1078_RS19700at 527.432 kb on + strand, within HMPREF1078_RS19700at 527.432 kb on + strand, within HMPREF1078_RS19700at 527.433 kb on - strand, within HMPREF1078_RS19700at 527.433 kb on - strand, within HMPREF1078_RS19700at 527.433 kb on - strand, within HMPREF1078_RS19700at 527.434 kb on + strand, within HMPREF1078_RS19700at 527.434 kb on + strand, within HMPREF1078_RS19700at 527.435 kb on - strand, within HMPREF1078_RS19700at 527.435 kb on - strand, within HMPREF1078_RS19700at 527.465 kb on - strand, within HMPREF1078_RS19700at 527.465 kb on - strand, within HMPREF1078_RS19700at 527.510 kb on - strand, within HMPREF1078_RS19700at 527.571 kb on + strand, within HMPREF1078_RS19700at 527.571 kb on + strand, within HMPREF1078_RS19700at 527.632 kb on + strand, within HMPREF1078_RS19700at 527.632 kb on + strand, within HMPREF1078_RS19700at 527.632 kb on + strand, within HMPREF1078_RS19700at 527.636 kb on + strand, within HMPREF1078_RS19700at 527.636 kb on + strand, within HMPREF1078_RS19700at 527.639 kb on + strand, within HMPREF1078_RS19700at 528.001 kb on + strandat 528.105 kb on - strandat 528.105 kb on - strandat 528.264 kb on + strand, within HMPREF1078_RS02130at 528.265 kb on - strand, within HMPREF1078_RS02130at 528.326 kb on + strand, within HMPREF1078_RS02130at 528.338 kb on + strand, within HMPREF1078_RS02130at 528.369 kb on - strand, within HMPREF1078_RS02130at 528.393 kb on + strand, within HMPREF1078_RS02130at 528.394 kb on - strand, within HMPREF1078_RS02130at 528.424 kb on - strand, within HMPREF1078_RS02130at 528.445 kb on - strand, within HMPREF1078_RS02130at 528.473 kb on - strand, within HMPREF1078_RS02130at 528.574 kb on + strand, within HMPREF1078_RS02130at 528.576 kb on + strand, within HMPREF1078_RS02130at 528.576 kb on + strand, within HMPREF1078_RS02130at 528.576 kb on + strand, within HMPREF1078_RS02130at 528.576 kb on + strand, within HMPREF1078_RS02130at 528.577 kb on - strand, within HMPREF1078_RS02130at 528.658 kb on - strand, within HMPREF1078_RS02130at 528.658 kb on - strand, within HMPREF1078_RS02130at 528.725 kb on + strand, within HMPREF1078_RS02130at 528.726 kb on - strand, within HMPREF1078_RS02130at 528.798 kb on - strand, within HMPREF1078_RS02130at 528.802 kb on + strand, within HMPREF1078_RS02130at 528.803 kb on - strand, within HMPREF1078_RS02130at 528.803 kb on - strand, within HMPREF1078_RS02130at 528.836 kb on + strand, within HMPREF1078_RS02130at 528.867 kb on - strand, within HMPREF1078_RS02130at 528.945 kb on - strand, within HMPREF1078_RS02130at 528.945 kb on - strand, within HMPREF1078_RS02130at 528.991 kb on - strand, within HMPREF1078_RS02130at 528.999 kb on - strand, within HMPREF1078_RS02130at 528.999 kb on - strand, within HMPREF1078_RS02130at 529.020 kb on + strandat 529.021 kb on - strandat 529.026 kb on - strandat 529.027 kb on + strandat 529.068 kb on - strandat 529.092 kb on + strandat 529.093 kb on - strandat 529.095 kb on + strandat 529.097 kb on + strandat 529.098 kb on - strandat 529.098 kb on - strandat 529.098 kb on - strandat 529.099 kb on + strandat 529.100 kb on - strandat 529.155 kb on - strandat 529.190 kb on - strandat 529.241 kb on + strandat 529.247 kb on - strandat 529.260 kb on + strandat 529.304 kb on - strandat 529.310 kb on + strandat 529.353 kb on + strandat 529.354 kb on - strandat 529.354 kb on - strandat 529.393 kb on + strandat 529.440 kb on + strandat 529.440 kb on + strandat 529.441 kb on - strandat 529.441 kb on - strandat 529.442 kb on + strandat 529.443 kb on - strandat 529.486 kb on + strandat 529.487 kb on - strandat 529.652 kb on + strand, within HMPREF1078_RS02135at 529.653 kb on - strand, within HMPREF1078_RS02135at 529.654 kb on + strand, within HMPREF1078_RS02135at 529.654 kb on + strand, within HMPREF1078_RS02135at 529.654 kb on + strand, within HMPREF1078_RS02135at 529.655 kb on - strand, within HMPREF1078_RS02135at 529.655 kb on - strand, within HMPREF1078_RS02135at 529.655 kb on - strand, within HMPREF1078_RS02135at 529.655 kb on - strand, within HMPREF1078_RS02135at 529.655 kb on - strand, within HMPREF1078_RS02135at 529.655 kb on - strand, within HMPREF1078_RS02135at 529.655 kb on - strand, within HMPREF1078_RS02135at 529.659 kb on - strand, within HMPREF1078_RS02135at 529.659 kb on - strand, within HMPREF1078_RS02135at 529.659 kb on - strand, within HMPREF1078_RS02135at 529.681 kb on + strand, within HMPREF1078_RS02135at 529.764 kb on - strand, within HMPREF1078_RS02135at 529.764 kb on - strand, within HMPREF1078_RS02135at 529.774 kb on - strand, within HMPREF1078_RS02135at 529.796 kb on + strand, within HMPREF1078_RS02135at 529.796 kb on + strand, within HMPREF1078_RS02135at 529.797 kb on - strand, within HMPREF1078_RS02135at 529.814 kb on - strand, within HMPREF1078_RS02135at 529.846 kb on - strand, within HMPREF1078_RS02135at 530.065 kb on - strand, within HMPREF1078_RS02135

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C)
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527,008 - -0.9
527,008 - -0.4
527,010 - +0.4
527,010 - -0.4
527,010 - -0.5
527,031 + +1.2
527,031 + -0.7
527,060 - +0.4
527,170 - +0.5
527,179 - -0.0
527,197 - -0.5
527,261 - HMPREF1078_RS19700 0.15 -1.9
527,261 - HMPREF1078_RS19700 0.15 -0.9
527,261 - HMPREF1078_RS19700 0.15 +1.9
527,396 + HMPREF1078_RS19700 0.30 -2.3
527,396 + HMPREF1078_RS19700 0.30 +1.0
527,406 - HMPREF1078_RS19700 0.32 -0.4
527,432 + HMPREF1078_RS19700 0.35 +0.1
527,432 + HMPREF1078_RS19700 0.35 -0.5
527,432 + HMPREF1078_RS19700 0.35 -0.8
527,433 - HMPREF1078_RS19700 0.35 +0.5
527,433 - HMPREF1078_RS19700 0.35 +0.3
527,433 - HMPREF1078_RS19700 0.35 +1.3
527,434 + HMPREF1078_RS19700 0.35 +1.2
527,434 + HMPREF1078_RS19700 0.35 -1.1
527,435 - HMPREF1078_RS19700 0.35 +0.0
527,435 - HMPREF1078_RS19700 0.35 +0.9
527,465 - HMPREF1078_RS19700 0.38 +0.5
527,465 - HMPREF1078_RS19700 0.38 -0.1
527,510 - HMPREF1078_RS19700 0.44 -0.5
527,571 + HMPREF1078_RS19700 0.51 -3.4
527,571 + HMPREF1078_RS19700 0.51 -0.9
527,632 + HMPREF1078_RS19700 0.58 +0.4
527,632 + HMPREF1078_RS19700 0.58 -0.0
527,632 + HMPREF1078_RS19700 0.58 +0.4
527,636 + HMPREF1078_RS19700 0.58 -0.6
527,636 + HMPREF1078_RS19700 0.58 +0.3
527,639 + HMPREF1078_RS19700 0.59 +0.9
528,001 + +1.1
528,105 - +1.9
528,105 - +0.1
528,264 + HMPREF1078_RS02130 0.23 -0.1
528,265 - HMPREF1078_RS02130 0.23 -0.4
528,326 + HMPREF1078_RS02130 0.29 -0.5
528,338 + HMPREF1078_RS02130 0.30 -2.1
528,369 - HMPREF1078_RS02130 0.33 +0.8
528,393 + HMPREF1078_RS02130 0.35 +0.3
528,394 - HMPREF1078_RS02130 0.35 -2.4
528,424 - HMPREF1078_RS02130 0.38 +0.4
528,445 - HMPREF1078_RS02130 0.39 -0.5
528,473 - HMPREF1078_RS02130 0.42 +0.1
528,574 + HMPREF1078_RS02130 0.51 -1.4
528,576 + HMPREF1078_RS02130 0.51 -1.1
528,576 + HMPREF1078_RS02130 0.51 -0.3
528,576 + HMPREF1078_RS02130 0.51 +0.4
528,576 + HMPREF1078_RS02130 0.51 -0.6
528,577 - HMPREF1078_RS02130 0.51 +0.5
528,658 - HMPREF1078_RS02130 0.59 -1.9
528,658 - HMPREF1078_RS02130 0.59 -0.1
528,725 + HMPREF1078_RS02130 0.65 -2.2
528,726 - HMPREF1078_RS02130 0.65 +0.3
528,798 - HMPREF1078_RS02130 0.71 +1.2
528,802 + HMPREF1078_RS02130 0.71 -1.0
528,803 - HMPREF1078_RS02130 0.71 -1.3
528,803 - HMPREF1078_RS02130 0.71 -0.6
528,836 + HMPREF1078_RS02130 0.74 -1.1
528,867 - HMPREF1078_RS02130 0.77 -1.9
528,945 - HMPREF1078_RS02130 0.84 -0.3
528,945 - HMPREF1078_RS02130 0.84 -0.5
528,991 - HMPREF1078_RS02130 0.88 -0.7
528,999 - HMPREF1078_RS02130 0.89 -1.6
528,999 - HMPREF1078_RS02130 0.89 -0.1
529,020 + -1.1
529,021 - -0.6
529,026 - -0.3
529,027 + -0.4
529,068 - -0.1
529,092 + -1.2
529,093 - +0.1
529,095 + +0.6
529,097 + +0.5
529,098 - -0.0
529,098 - -0.4
529,098 - -1.3
529,099 + -0.4
529,100 - +0.3
529,155 - +0.9
529,190 - -1.0
529,241 + -1.4
529,247 - -1.1
529,260 + +0.4
529,304 - +0.3
529,310 + +0.3
529,353 + -2.4
529,354 - -0.7
529,354 - +0.3
529,393 + +0.7
529,440 + -0.1
529,440 + -0.2
529,441 - +0.6
529,441 - +0.0
529,442 + +0.6
529,443 - -0.0
529,486 + -0.9
529,487 - -0.2
529,652 + HMPREF1078_RS02135 0.13 +0.4
529,653 - HMPREF1078_RS02135 0.14 +0.0
529,654 + HMPREF1078_RS02135 0.14 -0.3
529,654 + HMPREF1078_RS02135 0.14 -0.6
529,654 + HMPREF1078_RS02135 0.14 +0.4
529,655 - HMPREF1078_RS02135 0.14 -0.7
529,655 - HMPREF1078_RS02135 0.14 +2.0
529,655 - HMPREF1078_RS02135 0.14 -0.5
529,655 - HMPREF1078_RS02135 0.14 -0.7
529,655 - HMPREF1078_RS02135 0.14 +0.4
529,655 - HMPREF1078_RS02135 0.14 -1.9
529,655 - HMPREF1078_RS02135 0.14 +0.0
529,659 - HMPREF1078_RS02135 0.14 -0.7
529,659 - HMPREF1078_RS02135 0.14 +1.2
529,659 - HMPREF1078_RS02135 0.14 -0.6
529,681 + HMPREF1078_RS02135 0.15 -1.3
529,764 - HMPREF1078_RS02135 0.18 +0.4
529,764 - HMPREF1078_RS02135 0.18 -1.1
529,774 - HMPREF1078_RS02135 0.18 +0.4
529,796 + HMPREF1078_RS02135 0.19 -1.1
529,796 + HMPREF1078_RS02135 0.19 -0.8
529,797 - HMPREF1078_RS02135 0.19 -0.0
529,814 - HMPREF1078_RS02135 0.20 -0.7
529,846 - HMPREF1078_RS02135 0.21 -0.4
530,065 - HMPREF1078_RS02135 0.30 -1.4

Or see this region's nucleotide sequence