Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01850 and HMPREF1078_RS01855 are separated by 15 nucleotides HMPREF1078_RS01855 and HMPREF1078_RS01860 are separated by 49 nucleotides HMPREF1078_RS01860 and HMPREF1078_RS01865 are separated by 4 nucleotides HMPREF1078_RS01865 and HMPREF1078_RS01870 are separated by 75 nucleotides
HMPREF1078_RS01850: HMPREF1078_RS01850 - VWA domain-containing protein, at 460,471 to 461,490
_RS01850
HMPREF1078_RS01855: HMPREF1078_RS01855 - tetratricopeptide repeat protein, at 461,506 to 462,258
_RS01855
HMPREF1078_RS01860: HMPREF1078_RS01860 - BatD family protein, at 462,308 to 464,122
_RS01860
HMPREF1078_RS01865: HMPREF1078_RS01865 - tetratricopeptide repeat protein, at 464,127 to 464,894
_RS01865
HMPREF1078_RS01870: HMPREF1078_RS01870 - phosphatase PAP2 family protein, at 464,970 to 465,662
_RS01870
Position (kb) 462
463
464
465 Strain fitness (log2 ratio) -2
-1
0
1
2 at 461.502 kb on + strand at 461.502 kb on + strand at 461.502 kb on + strand at 461.700 kb on + strand, within HMPREF1078_RS01855 at 461.805 kb on + strand, within HMPREF1078_RS01855 at 461.832 kb on + strand, within HMPREF1078_RS01855 at 461.866 kb on + strand, within HMPREF1078_RS01855 at 462.462 kb on + strand at 462.520 kb on + strand, within HMPREF1078_RS01860 at 462.578 kb on + strand, within HMPREF1078_RS01860 at 462.650 kb on + strand, within HMPREF1078_RS01860 at 463.104 kb on + strand, within HMPREF1078_RS01860 at 463.137 kb on + strand, within HMPREF1078_RS01860 at 463.685 kb on + strand, within HMPREF1078_RS01860 at 463.964 kb on + strand at 464.062 kb on + strand at 464.062 kb on + strand at 464.067 kb on + strand at 464.067 kb on + strand at 464.069 kb on + strand at 464.069 kb on + strand at 464.095 kb on + strand at 464.138 kb on + strand at 464.140 kb on + strand at 464.140 kb on + strand at 464.144 kb on + strand at 464.158 kb on + strand at 464.183 kb on + strand at 464.313 kb on + strand, within HMPREF1078_RS01865 at 464.316 kb on + strand, within HMPREF1078_RS01865 at 464.316 kb on + strand, within HMPREF1078_RS01865 at 464.316 kb on + strand, within HMPREF1078_RS01865 at 464.316 kb on + strand, within HMPREF1078_RS01865 at 464.316 kb on + strand, within HMPREF1078_RS01865 at 464.340 kb on - strand, within HMPREF1078_RS01865 at 464.625 kb on + strand, within HMPREF1078_RS01865 at 464.638 kb on + strand, within HMPREF1078_RS01865 at 464.638 kb on + strand, within HMPREF1078_RS01865 at 464.666 kb on + strand, within HMPREF1078_RS01865 at 464.666 kb on + strand, within HMPREF1078_RS01865 at 464.667 kb on - strand, within HMPREF1078_RS01865 at 464.858 kb on - strand at 464.893 kb on - strand at 464.906 kb on + strand at 464.914 kb on - strand at 464.921 kb on - strand at 464.934 kb on - strand at 464.986 kb on + strand at 464.986 kb on + strand at 464.987 kb on - strand at 465.117 kb on + strand, within HMPREF1078_RS01870
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 461,502 + +0.3 461,502 + +1.1 461,502 + -1.3 461,700 + HMPREF1078_RS01855 0.26 -0.1 461,805 + HMPREF1078_RS01855 0.40 +1.5 461,832 + HMPREF1078_RS01855 0.43 +1.5 461,866 + HMPREF1078_RS01855 0.48 -1.3 462,462 + -0.9 462,520 + HMPREF1078_RS01860 0.12 -0.3 462,578 + HMPREF1078_RS01860 0.15 -0.5 462,650 + HMPREF1078_RS01860 0.19 +1.9 463,104 + HMPREF1078_RS01860 0.44 +0.5 463,137 + HMPREF1078_RS01860 0.46 +0.9 463,685 + HMPREF1078_RS01860 0.76 +1.5 463,964 + +0.9 464,062 + -0.2 464,062 + +0.1 464,067 + +0.1 464,067 + -0.5 464,069 + -1.0 464,069 + +0.1 464,095 + +1.2 464,138 + +1.5 464,140 + -0.5 464,140 + -1.6 464,144 + +1.6 464,158 + -0.7 464,183 + +1.5 464,313 + HMPREF1078_RS01865 0.24 +1.5 464,316 + HMPREF1078_RS01865 0.25 -0.5 464,316 + HMPREF1078_RS01865 0.25 +0.1 464,316 + HMPREF1078_RS01865 0.25 -1.3 464,316 + HMPREF1078_RS01865 0.25 -1.9 464,316 + HMPREF1078_RS01865 0.25 -1.1 464,340 - HMPREF1078_RS01865 0.28 +2.5 464,625 + HMPREF1078_RS01865 0.65 -1.5 464,638 + HMPREF1078_RS01865 0.67 -1.1 464,638 + HMPREF1078_RS01865 0.67 +2.0 464,666 + HMPREF1078_RS01865 0.70 -1.8 464,666 + HMPREF1078_RS01865 0.70 +0.3 464,667 - HMPREF1078_RS01865 0.70 +2.5 464,858 - +0.5 464,893 - +0.3 464,906 + +1.0 464,914 - +0.3 464,921 - +0.0 464,934 - -1.8 464,986 + -0.9 464,986 + -0.7 464,987 - -0.6 465,117 + HMPREF1078_RS01870 0.21 +0.5
Or see this region's nucleotide sequence