Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01825 and HMPREF1078_RS01830 are separated by 158 nucleotides HMPREF1078_RS01830 and HMPREF1078_RS01835 are separated by 105 nucleotides HMPREF1078_RS01835 and HMPREF1078_RS01840 are separated by 9 nucleotides
HMPREF1078_RS01825: HMPREF1078_RS01825 - HU family DNA-binding protein, at 455,160 to 456,314
_RS01825
HMPREF1078_RS01830: HMPREF1078_RS01830 - MoxR family ATPase, at 456,473 to 457,468
_RS01830
HMPREF1078_RS01835: HMPREF1078_RS01835 - DUF58 domain-containing protein, at 457,574 to 458,443
_RS01835
HMPREF1078_RS01840: HMPREF1078_RS01840 - hypothetical protein, at 458,453 to 459,469
_RS01840
Position (kb) 456
457
458 Strain fitness (log2 ratio) -2
-1
0
1 at 455.493 kb on - strand, within HMPREF1078_RS01825 at 455.499 kb on - strand, within HMPREF1078_RS01825 at 455.527 kb on + strand, within HMPREF1078_RS01825 at 455.528 kb on - strand, within HMPREF1078_RS01825 at 455.700 kb on - strand, within HMPREF1078_RS01825 at 455.733 kb on - strand, within HMPREF1078_RS01825 at 455.733 kb on - strand, within HMPREF1078_RS01825 at 455.843 kb on + strand, within HMPREF1078_RS01825 at 455.843 kb on + strand, within HMPREF1078_RS01825 at 455.843 kb on + strand, within HMPREF1078_RS01825 at 455.843 kb on + strand, within HMPREF1078_RS01825 at 455.844 kb on - strand, within HMPREF1078_RS01825 at 456.120 kb on + strand, within HMPREF1078_RS01825 at 456.120 kb on + strand, within HMPREF1078_RS01825 at 456.120 kb on + strand, within HMPREF1078_RS01825 at 456.124 kb on - strand, within HMPREF1078_RS01825 at 456.147 kb on + strand, within HMPREF1078_RS01825 at 456.148 kb on - strand, within HMPREF1078_RS01825 at 456.153 kb on + strand, within HMPREF1078_RS01825 at 456.153 kb on + strand, within HMPREF1078_RS01825 at 456.153 kb on + strand, within HMPREF1078_RS01825 at 456.153 kb on + strand, within HMPREF1078_RS01825 at 456.154 kb on - strand, within HMPREF1078_RS01825 at 456.154 kb on - strand, within HMPREF1078_RS01825 at 456.154 kb on - strand, within HMPREF1078_RS01825 at 456.159 kb on + strand, within HMPREF1078_RS01825 at 456.159 kb on + strand, within HMPREF1078_RS01825 at 456.160 kb on - strand, within HMPREF1078_RS01825 at 456.160 kb on - strand, within HMPREF1078_RS01825 at 456.160 kb on - strand, within HMPREF1078_RS01825 at 456.161 kb on + strand, within HMPREF1078_RS01825 at 456.161 kb on + strand, within HMPREF1078_RS01825 at 456.161 kb on + strand, within HMPREF1078_RS01825 at 456.162 kb on - strand, within HMPREF1078_RS01825 at 456.162 kb on - strand, within HMPREF1078_RS01825 at 456.162 kb on - strand, within HMPREF1078_RS01825 at 456.164 kb on + strand, within HMPREF1078_RS01825 at 456.165 kb on - strand, within HMPREF1078_RS01825 at 456.165 kb on - strand, within HMPREF1078_RS01825 at 456.165 kb on - strand, within HMPREF1078_RS01825 at 456.165 kb on - strand, within HMPREF1078_RS01825 at 456.295 kb on + strand at 456.296 kb on - strand at 456.312 kb on + strand at 456.366 kb on - strand at 456.402 kb on + strand at 456.455 kb on + strand at 456.457 kb on + strand at 456.544 kb on + strand at 456.564 kb on + strand at 456.701 kb on + strand, within HMPREF1078_RS01830 at 456.701 kb on + strand, within HMPREF1078_RS01830 at 456.701 kb on + strand, within HMPREF1078_RS01830 at 456.761 kb on + strand, within HMPREF1078_RS01830 at 456.914 kb on + strand, within HMPREF1078_RS01830 at 456.914 kb on + strand, within HMPREF1078_RS01830 at 456.999 kb on + strand, within HMPREF1078_RS01830 at 457.072 kb on + strand, within HMPREF1078_RS01830 at 457.135 kb on + strand, within HMPREF1078_RS01830 at 457.185 kb on + strand, within HMPREF1078_RS01830 at 457.185 kb on + strand, within HMPREF1078_RS01830 at 457.356 kb on + strand, within HMPREF1078_RS01830 at 457.470 kb on + strand at 457.470 kb on + strand at 457.534 kb on + strand at 457.534 kb on + strand at 457.570 kb on + strand at 457.760 kb on + strand, within HMPREF1078_RS01835 at 458.003 kb on + strand, within HMPREF1078_RS01835 at 458.198 kb on + strand, within HMPREF1078_RS01835 at 458.198 kb on + strand, within HMPREF1078_RS01835 at 458.437 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 455,493 - HMPREF1078_RS01825 0.29 +0.3 455,499 - HMPREF1078_RS01825 0.29 -1.5 455,527 + HMPREF1078_RS01825 0.32 -1.0 455,528 - HMPREF1078_RS01825 0.32 -0.8 455,700 - HMPREF1078_RS01825 0.47 -0.5 455,733 - HMPREF1078_RS01825 0.50 -1.3 455,733 - HMPREF1078_RS01825 0.50 -0.9 455,843 + HMPREF1078_RS01825 0.59 -2.5 455,843 + HMPREF1078_RS01825 0.59 -1.4 455,843 + HMPREF1078_RS01825 0.59 -1.2 455,843 + HMPREF1078_RS01825 0.59 -0.6 455,844 - HMPREF1078_RS01825 0.59 -2.1 456,120 + HMPREF1078_RS01825 0.83 +0.9 456,120 + HMPREF1078_RS01825 0.83 +0.1 456,120 + HMPREF1078_RS01825 0.83 -0.9 456,124 - HMPREF1078_RS01825 0.83 -2.3 456,147 + HMPREF1078_RS01825 0.85 -0.3 456,148 - HMPREF1078_RS01825 0.86 +0.1 456,153 + HMPREF1078_RS01825 0.86 -0.9 456,153 + HMPREF1078_RS01825 0.86 +0.9 456,153 + HMPREF1078_RS01825 0.86 -0.7 456,153 + HMPREF1078_RS01825 0.86 +0.0 456,154 - HMPREF1078_RS01825 0.86 +0.1 456,154 - HMPREF1078_RS01825 0.86 -0.6 456,154 - HMPREF1078_RS01825 0.86 +0.2 456,159 + HMPREF1078_RS01825 0.86 +0.2 456,159 + HMPREF1078_RS01825 0.86 -0.2 456,160 - HMPREF1078_RS01825 0.87 -0.5 456,160 - HMPREF1078_RS01825 0.87 +0.2 456,160 - HMPREF1078_RS01825 0.87 -0.6 456,161 + HMPREF1078_RS01825 0.87 +0.3 456,161 + HMPREF1078_RS01825 0.87 -1.8 456,161 + HMPREF1078_RS01825 0.87 +0.3 456,162 - HMPREF1078_RS01825 0.87 +0.6 456,162 - HMPREF1078_RS01825 0.87 +0.1 456,162 - HMPREF1078_RS01825 0.87 +1.6 456,164 + HMPREF1078_RS01825 0.87 -0.2 456,165 - HMPREF1078_RS01825 0.87 -1.9 456,165 - HMPREF1078_RS01825 0.87 +0.3 456,165 - HMPREF1078_RS01825 0.87 -0.4 456,165 - HMPREF1078_RS01825 0.87 -1.6 456,295 + -0.9 456,296 - +1.4 456,312 + +0.2 456,366 - -0.0 456,402 + +1.0 456,455 + +0.1 456,457 + -0.2 456,544 + -0.7 456,564 + +0.9 456,701 + HMPREF1078_RS01830 0.23 +0.1 456,701 + HMPREF1078_RS01830 0.23 -0.1 456,701 + HMPREF1078_RS01830 0.23 +0.1 456,761 + HMPREF1078_RS01830 0.29 +1.5 456,914 + HMPREF1078_RS01830 0.44 -0.3 456,914 + HMPREF1078_RS01830 0.44 -0.5 456,999 + HMPREF1078_RS01830 0.53 -0.9 457,072 + HMPREF1078_RS01830 0.60 +0.9 457,135 + HMPREF1078_RS01830 0.66 -0.3 457,185 + HMPREF1078_RS01830 0.71 -0.3 457,185 + HMPREF1078_RS01830 0.71 +0.9 457,356 + HMPREF1078_RS01830 0.89 +0.1 457,470 + +0.1 457,470 + -1.8 457,534 + +0.9 457,534 + +0.0 457,570 + +0.4 457,760 + HMPREF1078_RS01835 0.21 +0.9 458,003 + HMPREF1078_RS01835 0.49 +0.1 458,198 + HMPREF1078_RS01835 0.72 +0.5 458,198 + HMPREF1078_RS01835 0.72 +0.9 458,437 + -0.2
Or see this region's nucleotide sequence