Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01585 and HMPREF1078_RS19685 are separated by 136 nucleotides HMPREF1078_RS19685 and HMPREF1078_RS01595 are separated by 3 nucleotides HMPREF1078_RS01595 and HMPREF1078_RS01600 are separated by 106 nucleotides HMPREF1078_RS01600 and HMPREF1078_RS01605 are separated by 356 nucleotides
HMPREF1078_RS01585: HMPREF1078_RS01585 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 403,508 to 404,752
_RS01585
HMPREF1078_RS19685: HMPREF1078_RS19685 - hypothetical protein, at 404,889 to 405,179
_RS19685
HMPREF1078_RS01595: HMPREF1078_RS01595 - glucosaminidase domain-containing protein, at 405,183 to 405,650
_RS01595
HMPREF1078_RS01600: HMPREF1078_RS01600 - DsbA family protein, at 405,757 to 406,215
_RS01600
HMPREF1078_RS01605: HMPREF1078_RS01605 - hypothetical protein, at 406,572 to 407,039
_RS01605
Position (kb) 405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 404.183 kb on + strand, within HMPREF1078_RS01585 at 404.184 kb on - strand, within HMPREF1078_RS01585 at 404.207 kb on + strand, within HMPREF1078_RS01585 at 404.214 kb on - strand, within HMPREF1078_RS01585 at 404.218 kb on + strand, within HMPREF1078_RS01585 at 404.218 kb on + strand, within HMPREF1078_RS01585 at 404.219 kb on - strand, within HMPREF1078_RS01585 at 404.219 kb on - strand, within HMPREF1078_RS01585 at 404.219 kb on - strand, within HMPREF1078_RS01585 at 404.219 kb on - strand, within HMPREF1078_RS01585 at 404.219 kb on - strand, within HMPREF1078_RS01585 at 404.219 kb on - strand, within HMPREF1078_RS01585 at 404.275 kb on + strand, within HMPREF1078_RS01585 at 404.276 kb on - strand, within HMPREF1078_RS01585 at 404.276 kb on - strand, within HMPREF1078_RS01585 at 404.276 kb on - strand, within HMPREF1078_RS01585 at 404.294 kb on - strand, within HMPREF1078_RS01585 at 404.294 kb on - strand, within HMPREF1078_RS01585 at 404.306 kb on + strand, within HMPREF1078_RS01585 at 404.307 kb on - strand, within HMPREF1078_RS01585 at 404.307 kb on - strand, within HMPREF1078_RS01585 at 404.307 kb on - strand, within HMPREF1078_RS01585 at 404.341 kb on - strand, within HMPREF1078_RS01585 at 404.341 kb on - strand, within HMPREF1078_RS01585 at 404.374 kb on + strand, within HMPREF1078_RS01585 at 404.375 kb on - strand, within HMPREF1078_RS01585 at 404.375 kb on - strand, within HMPREF1078_RS01585 at 404.378 kb on + strand, within HMPREF1078_RS01585 at 404.378 kb on + strand, within HMPREF1078_RS01585 at 404.378 kb on + strand, within HMPREF1078_RS01585 at 404.378 kb on + strand, within HMPREF1078_RS01585 at 404.390 kb on - strand, within HMPREF1078_RS01585 at 404.545 kb on + strand, within HMPREF1078_RS01585 at 404.545 kb on + strand, within HMPREF1078_RS01585 at 404.610 kb on + strand, within HMPREF1078_RS01585 at 404.611 kb on - strand, within HMPREF1078_RS01585 at 404.614 kb on + strand, within HMPREF1078_RS01585 at 404.614 kb on + strand, within HMPREF1078_RS01585 at 404.614 kb on + strand, within HMPREF1078_RS01585 at 404.614 kb on + strand, within HMPREF1078_RS01585 at 404.614 kb on + strand, within HMPREF1078_RS01585 at 404.615 kb on - strand, within HMPREF1078_RS01585 at 404.631 kb on - strand at 404.709 kb on + strand at 404.709 kb on + strand at 404.709 kb on + strand at 404.710 kb on - strand at 404.710 kb on - strand at 404.710 kb on - strand at 404.714 kb on + strand at 404.714 kb on + strand at 404.714 kb on + strand at 404.714 kb on + strand at 404.715 kb on - strand at 404.715 kb on - strand at 404.715 kb on - strand at 404.717 kb on - strand at 404.717 kb on - strand at 404.751 kb on - strand at 404.753 kb on + strand at 404.778 kb on + strand at 404.779 kb on - strand at 404.779 kb on - strand at 404.779 kb on - strand at 404.779 kb on - strand at 404.907 kb on - strand at 404.909 kb on - strand at 404.909 kb on - strand at 405.023 kb on + strand, within HMPREF1078_RS19685 at 405.024 kb on - strand, within HMPREF1078_RS19685 at 405.079 kb on + strand, within HMPREF1078_RS19685 at 405.184 kb on + strand at 405.185 kb on - strand at 405.292 kb on + strand, within HMPREF1078_RS01595 at 405.293 kb on - strand, within HMPREF1078_RS01595 at 405.302 kb on - strand, within HMPREF1078_RS01595 at 405.382 kb on + strand, within HMPREF1078_RS01595 at 405.413 kb on - strand, within HMPREF1078_RS01595 at 405.413 kb on - strand, within HMPREF1078_RS01595 at 405.413 kb on - strand, within HMPREF1078_RS01595 at 405.658 kb on - strand at 405.745 kb on - strand at 405.964 kb on - strand, within HMPREF1078_RS01600 at 406.074 kb on + strand, within HMPREF1078_RS01600 at 406.202 kb on + strand at 406.202 kb on + strand at 406.202 kb on + strand at 406.208 kb on - strand at 406.238 kb on - strand at 406.280 kb on + strand at 406.280 kb on + strand at 406.282 kb on + strand at 406.282 kb on + strand at 406.282 kb on + strand at 406.338 kb on + strand at 406.413 kb on + strand at 406.413 kb on + strand at 406.413 kb on + strand at 406.413 kb on + strand at 406.413 kb on + strand at 406.435 kb on + strand at 406.435 kb on + strand at 406.435 kb on + strand at 406.437 kb on + strand at 406.437 kb on + strand at 406.438 kb on - strand at 406.474 kb on + strand at 406.474 kb on + strand at 406.474 kb on + strand at 406.476 kb on + strand at 406.476 kb on + strand at 406.476 kb on + strand at 406.476 kb on + strand at 406.476 kb on + strand at 406.479 kb on + strand at 406.479 kb on + strand at 406.480 kb on - strand at 406.480 kb on - strand at 406.483 kb on - strand at 406.505 kb on + strand at 406.505 kb on + strand at 406.593 kb on + strand at 406.593 kb on + strand at 406.593 kb on + strand at 406.594 kb on - strand at 406.594 kb on - strand at 406.594 kb on - strand at 406.622 kb on + strand, within HMPREF1078_RS01605 at 406.623 kb on - strand, within HMPREF1078_RS01605 at 406.623 kb on - strand, within HMPREF1078_RS01605
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 404,183 + HMPREF1078_RS01585 0.54 +0.7 404,184 - HMPREF1078_RS01585 0.54 -0.9 404,207 + HMPREF1078_RS01585 0.56 +0.8 404,214 - HMPREF1078_RS01585 0.57 +0.2 404,218 + HMPREF1078_RS01585 0.57 +2.0 404,218 + HMPREF1078_RS01585 0.57 +0.4 404,219 - HMPREF1078_RS01585 0.57 +0.4 404,219 - HMPREF1078_RS01585 0.57 -2.3 404,219 - HMPREF1078_RS01585 0.57 -0.3 404,219 - HMPREF1078_RS01585 0.57 -0.7 404,219 - HMPREF1078_RS01585 0.57 +0.5 404,219 - HMPREF1078_RS01585 0.57 -0.6 404,275 + HMPREF1078_RS01585 0.62 -1.9 404,276 - HMPREF1078_RS01585 0.62 -1.7 404,276 - HMPREF1078_RS01585 0.62 +0.1 404,276 - HMPREF1078_RS01585 0.62 +0.3 404,294 - HMPREF1078_RS01585 0.63 -0.6 404,294 - HMPREF1078_RS01585 0.63 -2.5 404,306 + HMPREF1078_RS01585 0.64 +0.8 404,307 - HMPREF1078_RS01585 0.64 -0.3 404,307 - HMPREF1078_RS01585 0.64 +0.6 404,307 - HMPREF1078_RS01585 0.64 -0.9 404,341 - HMPREF1078_RS01585 0.67 +0.9 404,341 - HMPREF1078_RS01585 0.67 +2.9 404,374 + HMPREF1078_RS01585 0.70 -0.4 404,375 - HMPREF1078_RS01585 0.70 -2.9 404,375 - HMPREF1078_RS01585 0.70 -0.8 404,378 + HMPREF1078_RS01585 0.70 -0.5 404,378 + HMPREF1078_RS01585 0.70 -2.0 404,378 + HMPREF1078_RS01585 0.70 +1.3 404,378 + HMPREF1078_RS01585 0.70 +0.9 404,390 - HMPREF1078_RS01585 0.71 -1.1 404,545 + HMPREF1078_RS01585 0.83 -0.8 404,545 + HMPREF1078_RS01585 0.83 -1.5 404,610 + HMPREF1078_RS01585 0.89 +0.1 404,611 - HMPREF1078_RS01585 0.89 -1.0 404,614 + HMPREF1078_RS01585 0.89 +0.5 404,614 + HMPREF1078_RS01585 0.89 -0.3 404,614 + HMPREF1078_RS01585 0.89 +0.7 404,614 + HMPREF1078_RS01585 0.89 +1.1 404,614 + HMPREF1078_RS01585 0.89 -1.6 404,615 - HMPREF1078_RS01585 0.89 +0.4 404,631 - +0.1 404,709 + -1.1 404,709 + -0.7 404,709 + -0.7 404,710 - -2.2 404,710 - +1.1 404,710 - -0.6 404,714 + +2.1 404,714 + +0.2 404,714 + -2.7 404,714 + +1.1 404,715 - +1.1 404,715 - -1.1 404,715 - -1.6 404,717 - -0.5 404,717 - -0.8 404,751 - +2.5 404,753 + +0.3 404,778 + -1.9 404,779 - +0.6 404,779 - +0.3 404,779 - +1.2 404,779 - -0.1 404,907 - -0.7 404,909 - -0.1 404,909 - -1.8 405,023 + HMPREF1078_RS19685 0.46 +0.1 405,024 - HMPREF1078_RS19685 0.46 -1.3 405,079 + HMPREF1078_RS19685 0.65 -0.1 405,184 + -0.2 405,185 - +0.4 405,292 + HMPREF1078_RS01595 0.23 -0.7 405,293 - HMPREF1078_RS01595 0.24 -1.8 405,302 - HMPREF1078_RS01595 0.25 -0.9 405,382 + HMPREF1078_RS01595 0.43 -1.6 405,413 - HMPREF1078_RS01595 0.49 +0.6 405,413 - HMPREF1078_RS01595 0.49 -1.4 405,413 - HMPREF1078_RS01595 0.49 -0.9 405,658 - +0.1 405,745 - +1.1 405,964 - HMPREF1078_RS01600 0.45 +0.5 406,074 + HMPREF1078_RS01600 0.69 +0.5 406,202 + -0.9 406,202 + -1.1 406,202 + -0.3 406,208 - +1.2 406,238 - +0.6 406,280 + -0.3 406,280 + -0.6 406,282 + -0.1 406,282 + +0.7 406,282 + -0.1 406,338 + -0.8 406,413 + +0.9 406,413 + +0.3 406,413 + +0.7 406,413 + -0.1 406,413 + +1.3 406,435 + +0.0 406,435 + -0.5 406,435 + -1.3 406,437 + +0.1 406,437 + +0.1 406,438 - -1.2 406,474 + -0.1 406,474 + -0.5 406,474 + +0.3 406,476 + +1.4 406,476 + +0.7 406,476 + +0.8 406,476 + -0.1 406,476 + +0.6 406,479 + -0.9 406,479 + -0.6 406,480 - -0.2 406,480 - -0.1 406,483 - +0.1 406,505 + -0.1 406,505 + -0.2 406,593 + +1.7 406,593 + +0.8 406,593 + -1.1 406,594 - -1.5 406,594 - +2.6 406,594 - +0.8 406,622 + HMPREF1078_RS01605 0.11 -1.2 406,623 - HMPREF1078_RS01605 0.11 +1.5 406,623 - HMPREF1078_RS01605 0.11 -0.5
Or see this region's nucleotide sequence