Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00925 and HMPREF1078_RS00930 are separated by 10 nucleotides HMPREF1078_RS00930 and HMPREF1078_RS00935 overlap by 4 nucleotides
HMPREF1078_RS00925: HMPREF1078_RS00925 - UpxY family transcription antiterminator, at 227,054 to 227,566
_RS00925
HMPREF1078_RS00930: HMPREF1078_RS00930 - cobyric acid synthase, at 227,577 to 229,100
_RS00930
HMPREF1078_RS00935: HMPREF1078_RS00935 - GNAT family N-acetyltransferase, at 229,097 to 229,600
_RS00935
Position (kb) 227
228
229
230 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 226.595 kb on + strand at 226.596 kb on - strand at 226.638 kb on + strand at 226.649 kb on + strand at 226.649 kb on + strand at 226.653 kb on + strand at 226.653 kb on + strand at 226.653 kb on + strand at 226.654 kb on - strand at 226.654 kb on - strand at 226.654 kb on - strand at 226.654 kb on - strand at 226.654 kb on - strand at 226.655 kb on + strand at 226.656 kb on - strand at 226.668 kb on + strand at 226.669 kb on - strand at 226.678 kb on + strand at 226.678 kb on + strand at 226.678 kb on + strand at 226.679 kb on - strand at 226.688 kb on - strand at 226.733 kb on - strand at 226.765 kb on + strand at 226.766 kb on - strand at 226.812 kb on + strand at 226.813 kb on - strand at 226.848 kb on - strand at 226.849 kb on + strand at 226.850 kb on - strand at 226.850 kb on - strand at 226.852 kb on - strand at 226.863 kb on + strand at 226.863 kb on + strand at 226.863 kb on + strand at 226.864 kb on - strand at 226.864 kb on - strand at 226.864 kb on - strand at 226.864 kb on - strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.893 kb on + strand at 226.893 kb on + strand at 226.893 kb on + strand at 226.916 kb on + strand at 226.918 kb on + strand at 226.918 kb on + strand at 226.929 kb on - strand at 226.936 kb on + strand at 226.937 kb on - strand at 226.940 kb on + strand at 226.941 kb on + strand at 226.941 kb on - strand at 226.947 kb on - strand at 226.992 kb on + strand at 226.992 kb on + strand at 227.001 kb on - strand at 227.008 kb on - strand at 227.024 kb on - strand at 227.038 kb on + strand at 227.038 kb on + strand at 227.039 kb on - strand at 227.039 kb on - strand at 227.048 kb on + strand at 227.048 kb on + strand at 227.048 kb on + strand at 227.048 kb on + strand at 227.049 kb on - strand at 227.049 kb on - strand at 227.099 kb on + strand at 227.108 kb on + strand, within HMPREF1078_RS00925 at 227.108 kb on + strand, within HMPREF1078_RS00925 at 227.108 kb on + strand, within HMPREF1078_RS00925 at 227.108 kb on + strand, within HMPREF1078_RS00925 at 227.109 kb on - strand, within HMPREF1078_RS00925 at 227.109 kb on - strand, within HMPREF1078_RS00925 at 227.109 kb on - strand, within HMPREF1078_RS00925 at 227.235 kb on + strand, within HMPREF1078_RS00925 at 227.235 kb on + strand, within HMPREF1078_RS00925 at 227.236 kb on - strand, within HMPREF1078_RS00925 at 227.236 kb on - strand, within HMPREF1078_RS00925 at 227.239 kb on + strand, within HMPREF1078_RS00925 at 227.239 kb on + strand, within HMPREF1078_RS00925 at 227.240 kb on - strand, within HMPREF1078_RS00925 at 227.240 kb on - strand, within HMPREF1078_RS00925 at 227.246 kb on + strand, within HMPREF1078_RS00925 at 227.246 kb on + strand, within HMPREF1078_RS00925 at 227.246 kb on + strand, within HMPREF1078_RS00925 at 227.247 kb on - strand, within HMPREF1078_RS00925 at 227.256 kb on + strand, within HMPREF1078_RS00925 at 227.263 kb on + strand, within HMPREF1078_RS00925 at 227.264 kb on - strand, within HMPREF1078_RS00925 at 227.297 kb on + strand, within HMPREF1078_RS00925 at 227.297 kb on + strand, within HMPREF1078_RS00925 at 227.297 kb on + strand, within HMPREF1078_RS00925 at 227.297 kb on + strand, within HMPREF1078_RS00925 at 227.321 kb on + strand, within HMPREF1078_RS00925 at 227.321 kb on + strand, within HMPREF1078_RS00925 at 227.321 kb on + strand, within HMPREF1078_RS00925 at 227.322 kb on - strand, within HMPREF1078_RS00925 at 227.322 kb on - strand, within HMPREF1078_RS00925 at 227.322 kb on - strand, within HMPREF1078_RS00925 at 227.464 kb on - strand, within HMPREF1078_RS00925 at 227.488 kb on - strand, within HMPREF1078_RS00925 at 227.488 kb on - strand, within HMPREF1078_RS00925 at 227.496 kb on - strand, within HMPREF1078_RS00925 at 227.496 kb on - strand, within HMPREF1078_RS00925 at 227.508 kb on + strand, within HMPREF1078_RS00925 at 227.516 kb on - strand at 227.516 kb on - strand at 227.532 kb on + strand at 227.533 kb on - strand at 227.564 kb on + strand at 227.564 kb on + strand at 227.565 kb on - strand at 227.565 kb on - strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.598 kb on - strand at 227.599 kb on + strand at 227.599 kb on + strand at 227.599 kb on + strand at 227.600 kb on - strand at 227.600 kb on - strand at 227.600 kb on - strand at 227.600 kb on - strand at 227.600 kb on - strand at 227.626 kb on - strand at 227.645 kb on - strand at 227.742 kb on + strand, within HMPREF1078_RS00930 at 227.753 kb on + strand, within HMPREF1078_RS00930 at 227.753 kb on + strand, within HMPREF1078_RS00930 at 227.755 kb on + strand, within HMPREF1078_RS00930 at 227.755 kb on + strand, within HMPREF1078_RS00930 at 227.756 kb on - strand, within HMPREF1078_RS00930 at 227.782 kb on + strand, within HMPREF1078_RS00930 at 227.865 kb on + strand, within HMPREF1078_RS00930 at 227.865 kb on + strand, within HMPREF1078_RS00930 at 227.866 kb on - strand, within HMPREF1078_RS00930 at 227.990 kb on + strand, within HMPREF1078_RS00930 at 227.991 kb on - strand, within HMPREF1078_RS00930 at 227.991 kb on - strand, within HMPREF1078_RS00930 at 227.991 kb on - strand, within HMPREF1078_RS00930 at 228.143 kb on + strand, within HMPREF1078_RS00930 at 228.207 kb on - strand, within HMPREF1078_RS00930 at 228.239 kb on + strand, within HMPREF1078_RS00930 at 228.239 kb on + strand, within HMPREF1078_RS00930 at 228.242 kb on - strand, within HMPREF1078_RS00930 at 228.244 kb on + strand, within HMPREF1078_RS00930 at 228.274 kb on - strand, within HMPREF1078_RS00930 at 228.274 kb on - strand, within HMPREF1078_RS00930 at 228.274 kb on - strand, within HMPREF1078_RS00930 at 228.293 kb on + strand, within HMPREF1078_RS00930 at 228.343 kb on + strand, within HMPREF1078_RS00930 at 228.347 kb on + strand, within HMPREF1078_RS00930 at 228.420 kb on + strand, within HMPREF1078_RS00930 at 228.500 kb on + strand, within HMPREF1078_RS00930 at 228.635 kb on + strand, within HMPREF1078_RS00930 at 228.677 kb on + strand, within HMPREF1078_RS00930 at 228.704 kb on + strand, within HMPREF1078_RS00930 at 228.707 kb on - strand, within HMPREF1078_RS00930 at 228.753 kb on + strand, within HMPREF1078_RS00930 at 228.753 kb on + strand, within HMPREF1078_RS00930 at 228.781 kb on + strand, within HMPREF1078_RS00930 at 228.840 kb on - strand, within HMPREF1078_RS00930 at 229.014 kb on + strand at 229.015 kb on - strand at 229.015 kb on - strand at 229.015 kb on - strand at 229.015 kb on - strand at 229.017 kb on - strand at 229.017 kb on - strand at 229.092 kb on + strand at 229.092 kb on + strand at 229.092 kb on + strand at 229.092 kb on + strand at 229.093 kb on - strand at 229.126 kb on - strand at 229.138 kb on - strand at 229.141 kb on - strand at 229.195 kb on + strand, within HMPREF1078_RS00935 at 229.197 kb on + strand, within HMPREF1078_RS00935 at 229.205 kb on + strand, within HMPREF1078_RS00935 at 229.226 kb on + strand, within HMPREF1078_RS00935 at 229.239 kb on - strand, within HMPREF1078_RS00935 at 229.272 kb on + strand, within HMPREF1078_RS00935 at 229.272 kb on + strand, within HMPREF1078_RS00935 at 229.319 kb on + strand, within HMPREF1078_RS00935 at 229.320 kb on - strand, within HMPREF1078_RS00935 at 229.335 kb on + strand, within HMPREF1078_RS00935 at 229.353 kb on + strand, within HMPREF1078_RS00935 at 229.368 kb on - strand, within HMPREF1078_RS00935 at 229.368 kb on - strand, within HMPREF1078_RS00935 at 229.387 kb on - strand, within HMPREF1078_RS00935 at 229.411 kb on - strand, within HMPREF1078_RS00935 at 229.471 kb on - strand, within HMPREF1078_RS00935 at 229.486 kb on + strand, within HMPREF1078_RS00935 at 229.487 kb on - strand, within HMPREF1078_RS00935 at 229.487 kb on - strand, within HMPREF1078_RS00935 at 229.489 kb on - strand, within HMPREF1078_RS00935 at 229.522 kb on - strand, within HMPREF1078_RS00935 at 229.522 kb on - strand, within HMPREF1078_RS00935 at 229.522 kb on - strand, within HMPREF1078_RS00935 at 229.601 kb on - strand at 229.602 kb on + strand at 229.715 kb on - strand at 229.752 kb on - strand at 229.773 kb on + strand at 229.964 kb on + strand at 230.017 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 226,595 + -1.6 226,596 - +0.5 226,638 + +0.3 226,649 + -0.5 226,649 + -0.3 226,653 + -0.9 226,653 + +0.5 226,653 + +0.1 226,654 - -0.8 226,654 - +1.1 226,654 - -2.1 226,654 - -0.5 226,654 - -1.8 226,655 + +0.7 226,656 - +0.2 226,668 + -1.2 226,669 - -0.6 226,678 + -0.2 226,678 + +0.0 226,678 + -1.5 226,679 - -0.0 226,688 - +1.0 226,733 - -0.0 226,765 + -1.0 226,766 - +0.6 226,812 + -1.0 226,813 - -0.6 226,848 - +1.1 226,849 + -0.6 226,850 - +0.6 226,850 - +0.2 226,852 - -1.0 226,863 + -0.1 226,863 + +0.2 226,863 + -1.1 226,864 - +1.0 226,864 - +1.2 226,864 - +0.5 226,864 - +0.7 226,867 + +0.5 226,867 + +1.1 226,867 + +0.0 226,867 + +0.3 226,867 + -0.2 226,867 + -0.4 226,867 + +0.5 226,867 + -1.5 226,867 + +0.2 226,868 - +0.4 226,868 - +1.5 226,868 - +0.1 226,868 - +0.4 226,868 - -0.2 226,868 - +0.2 226,868 - -0.3 226,868 - +0.5 226,893 + -0.4 226,893 + -0.5 226,893 + -0.5 226,916 + +0.3 226,918 + +0.2 226,918 + +0.2 226,929 - -0.0 226,936 + -0.4 226,937 - -1.3 226,940 + -0.2 226,941 + +0.4 226,941 - -1.0 226,947 - -0.5 226,992 + -0.4 226,992 + +0.1 227,001 - -0.9 227,008 - -0.7 227,024 - -1.2 227,038 + -0.2 227,038 + -1.2 227,039 - -1.7 227,039 - -2.0 227,048 + +0.8 227,048 + -0.2 227,048 + -0.7 227,048 + -0.7 227,049 - +0.5 227,049 - -0.4 227,099 + -1.0 227,108 + HMPREF1078_RS00925 0.11 -2.2 227,108 + HMPREF1078_RS00925 0.11 -2.5 227,108 + HMPREF1078_RS00925 0.11 -1.4 227,108 + HMPREF1078_RS00925 0.11 -1.3 227,109 - HMPREF1078_RS00925 0.11 -1.7 227,109 - HMPREF1078_RS00925 0.11 -0.6 227,109 - HMPREF1078_RS00925 0.11 -1.7 227,235 + HMPREF1078_RS00925 0.35 -0.8 227,235 + HMPREF1078_RS00925 0.35 -0.9 227,236 - HMPREF1078_RS00925 0.35 -1.8 227,236 - HMPREF1078_RS00925 0.35 -1.0 227,239 + HMPREF1078_RS00925 0.36 -1.2 227,239 + HMPREF1078_RS00925 0.36 -1.3 227,240 - HMPREF1078_RS00925 0.36 -1.8 227,240 - HMPREF1078_RS00925 0.36 -2.0 227,246 + HMPREF1078_RS00925 0.37 -0.3 227,246 + HMPREF1078_RS00925 0.37 +0.9 227,246 + HMPREF1078_RS00925 0.37 -1.7 227,247 - HMPREF1078_RS00925 0.38 -1.7 227,256 + HMPREF1078_RS00925 0.39 -1.0 227,263 + HMPREF1078_RS00925 0.41 -2.4 227,264 - HMPREF1078_RS00925 0.41 -2.6 227,297 + HMPREF1078_RS00925 0.47 -1.5 227,297 + HMPREF1078_RS00925 0.47 -0.8 227,297 + HMPREF1078_RS00925 0.47 -3.0 227,297 + HMPREF1078_RS00925 0.47 -1.3 227,321 + HMPREF1078_RS00925 0.52 -0.7 227,321 + HMPREF1078_RS00925 0.52 -1.3 227,321 + HMPREF1078_RS00925 0.52 -1.5 227,322 - HMPREF1078_RS00925 0.52 +0.5 227,322 - HMPREF1078_RS00925 0.52 -1.7 227,322 - HMPREF1078_RS00925 0.52 -2.5 227,464 - HMPREF1078_RS00925 0.80 -1.3 227,488 - HMPREF1078_RS00925 0.85 -1.0 227,488 - HMPREF1078_RS00925 0.85 -1.8 227,496 - HMPREF1078_RS00925 0.86 -1.2 227,496 - HMPREF1078_RS00925 0.86 -1.1 227,508 + HMPREF1078_RS00925 0.88 -1.8 227,516 - -2.3 227,516 - -1.5 227,532 + -1.7 227,533 - -1.3 227,564 + -1.0 227,564 + +0.1 227,565 - +1.0 227,565 - +0.5 227,597 + -2.1 227,597 + -0.8 227,597 + -0.1 227,597 + +0.1 227,597 + -0.2 227,597 + -0.3 227,597 + -1.2 227,597 + +0.5 227,598 - +0.5 227,599 + -2.1 227,599 + +0.6 227,599 + +0.5 227,600 - -1.6 227,600 - +2.1 227,600 - -1.0 227,600 - -2.1 227,600 - +0.1 227,626 - +1.5 227,645 - -3.4 227,742 + HMPREF1078_RS00930 0.11 +1.0 227,753 + HMPREF1078_RS00930 0.12 +0.1 227,753 + HMPREF1078_RS00930 0.12 -0.5 227,755 + HMPREF1078_RS00930 0.12 -1.9 227,755 + HMPREF1078_RS00930 0.12 -0.6 227,756 - HMPREF1078_RS00930 0.12 +1.9 227,782 + HMPREF1078_RS00930 0.13 -1.5 227,865 + HMPREF1078_RS00930 0.19 -1.9 227,865 + HMPREF1078_RS00930 0.19 +0.3 227,866 - HMPREF1078_RS00930 0.19 -0.3 227,990 + HMPREF1078_RS00930 0.27 -0.9 227,991 - HMPREF1078_RS00930 0.27 -0.1 227,991 - HMPREF1078_RS00930 0.27 +0.1 227,991 - HMPREF1078_RS00930 0.27 -0.7 228,143 + HMPREF1078_RS00930 0.37 +0.9 228,207 - HMPREF1078_RS00930 0.41 -0.3 228,239 + HMPREF1078_RS00930 0.43 -0.2 228,239 + HMPREF1078_RS00930 0.43 -0.8 228,242 - HMPREF1078_RS00930 0.44 +0.2 228,244 + HMPREF1078_RS00930 0.44 -0.1 228,274 - HMPREF1078_RS00930 0.46 +0.1 228,274 - HMPREF1078_RS00930 0.46 +0.3 228,274 - HMPREF1078_RS00930 0.46 +1.0 228,293 + HMPREF1078_RS00930 0.47 +1.2 228,343 + HMPREF1078_RS00930 0.50 +0.7 228,347 + HMPREF1078_RS00930 0.51 -0.5 228,420 + HMPREF1078_RS00930 0.55 +0.1 228,500 + HMPREF1078_RS00930 0.61 -0.3 228,635 + HMPREF1078_RS00930 0.69 +0.5 228,677 + HMPREF1078_RS00930 0.72 -1.3 228,704 + HMPREF1078_RS00930 0.74 -2.3 228,707 - HMPREF1078_RS00930 0.74 -0.2 228,753 + HMPREF1078_RS00930 0.77 -2.2 228,753 + HMPREF1078_RS00930 0.77 +1.2 228,781 + HMPREF1078_RS00930 0.79 +0.5 228,840 - HMPREF1078_RS00930 0.83 -0.3 229,014 + +0.5 229,015 - +1.2 229,015 - +1.7 229,015 - -0.1 229,015 - +0.5 229,017 - +2.5 229,017 - -1.0 229,092 + +1.3 229,092 + +0.1 229,092 + +1.5 229,092 + +0.5 229,093 - -0.1 229,126 - -0.3 229,138 - -1.9 229,141 - -1.1 229,195 + HMPREF1078_RS00935 0.19 -0.6 229,197 + HMPREF1078_RS00935 0.20 +0.6 229,205 + HMPREF1078_RS00935 0.21 +1.5 229,226 + HMPREF1078_RS00935 0.26 +0.5 229,239 - HMPREF1078_RS00935 0.28 -0.3 229,272 + HMPREF1078_RS00935 0.35 +0.6 229,272 + HMPREF1078_RS00935 0.35 +2.5 229,319 + HMPREF1078_RS00935 0.44 -0.8 229,320 - HMPREF1078_RS00935 0.44 -0.6 229,335 + HMPREF1078_RS00935 0.47 +0.5 229,353 + HMPREF1078_RS00935 0.51 +0.1 229,368 - HMPREF1078_RS00935 0.54 -1.8 229,368 - HMPREF1078_RS00935 0.54 -0.5 229,387 - HMPREF1078_RS00935 0.58 -1.1 229,411 - HMPREF1078_RS00935 0.62 +0.7 229,471 - HMPREF1078_RS00935 0.74 -0.3 229,486 + HMPREF1078_RS00935 0.77 +0.7 229,487 - HMPREF1078_RS00935 0.77 -1.1 229,487 - HMPREF1078_RS00935 0.77 +0.6 229,489 - HMPREF1078_RS00935 0.78 -0.9 229,522 - HMPREF1078_RS00935 0.84 +0.1 229,522 - HMPREF1078_RS00935 0.84 -0.4 229,522 - HMPREF1078_RS00935 0.84 +0.4 229,601 - +1.0 229,602 + +1.1 229,715 - +1.9 229,752 - +0.1 229,773 + -1.6 229,964 + +2.1 230,017 - +0.2
Or see this region's nucleotide sequence