Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00500 and HMPREF1078_RS00505 are separated by 108 nucleotides HMPREF1078_RS00505 and HMPREF1078_RS00510 are separated by 175 nucleotides HMPREF1078_RS00510 and HMPREF1078_RS00515 are separated by 45 nucleotides
HMPREF1078_RS00500: HMPREF1078_RS00500 - ATP-dependent chaperone ClpB, at 114,309 to 116,897
_RS00500
HMPREF1078_RS00505: HMPREF1078_RS00505 - RecQ family ATP-dependent DNA helicase, at 117,006 to 118,712
_RS00505
HMPREF1078_RS00510: HMPREF1078_RS00510 - hypothetical protein, at 118,888 to 119,214
_RS00510
HMPREF1078_RS00515: HMPREF1078_RS00515 - OmpA family protein, at 119,260 to 119,943
_RS00515
Position (kb) 117
118
119 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 116.039 kb on + strand, within HMPREF1078_RS00500 at 116.039 kb on + strand, within HMPREF1078_RS00500 at 116.040 kb on - strand, within HMPREF1078_RS00500 at 116.105 kb on + strand, within HMPREF1078_RS00500 at 116.118 kb on - strand, within HMPREF1078_RS00500 at 116.184 kb on - strand, within HMPREF1078_RS00500 at 116.202 kb on - strand, within HMPREF1078_RS00500 at 116.260 kb on - strand, within HMPREF1078_RS00500 at 116.359 kb on + strand, within HMPREF1078_RS00500 at 116.359 kb on + strand, within HMPREF1078_RS00500 at 116.360 kb on - strand, within HMPREF1078_RS00500 at 116.360 kb on - strand, within HMPREF1078_RS00500 at 116.360 kb on - strand, within HMPREF1078_RS00500 at 116.409 kb on - strand, within HMPREF1078_RS00500 at 116.435 kb on + strand, within HMPREF1078_RS00500 at 116.444 kb on + strand, within HMPREF1078_RS00500 at 116.447 kb on + strand, within HMPREF1078_RS00500 at 116.447 kb on + strand, within HMPREF1078_RS00500 at 116.496 kb on - strand, within HMPREF1078_RS00500 at 116.709 kb on - strand at 116.709 kb on - strand at 116.793 kb on + strand at 116.794 kb on - strand at 116.917 kb on + strand at 116.917 kb on + strand at 116.917 kb on + strand at 116.918 kb on - strand at 116.919 kb on + strand at 116.919 kb on + strand at 116.926 kb on - strand at 116.926 kb on - strand at 116.983 kb on + strand at 116.983 kb on + strand at 117.005 kb on + strand at 117.006 kb on - strand at 117.325 kb on - strand, within HMPREF1078_RS00505 at 117.326 kb on + strand, within HMPREF1078_RS00505 at 117.434 kb on + strand, within HMPREF1078_RS00505 at 117.596 kb on - strand, within HMPREF1078_RS00505 at 117.674 kb on + strand, within HMPREF1078_RS00505 at 117.680 kb on - strand, within HMPREF1078_RS00505 at 117.708 kb on + strand, within HMPREF1078_RS00505 at 118.263 kb on + strand, within HMPREF1078_RS00505 at 118.264 kb on - strand, within HMPREF1078_RS00505 at 118.691 kb on + strand at 118.692 kb on - strand at 118.710 kb on + strand at 118.728 kb on - strand at 118.734 kb on - strand at 118.740 kb on + strand at 118.749 kb on + strand at 118.763 kb on - strand at 118.772 kb on - strand at 118.777 kb on + strand at 118.777 kb on + strand at 118.777 kb on + strand at 118.778 kb on - strand at 118.785 kb on - strand at 118.858 kb on + strand at 118.858 kb on + strand at 118.859 kb on - strand at 118.866 kb on - strand at 118.887 kb on + strand at 118.887 kb on + strand at 118.908 kb on - strand at 118.913 kb on - strand at 118.932 kb on - strand, within HMPREF1078_RS00510 at 118.948 kb on + strand, within HMPREF1078_RS00510 at 118.948 kb on + strand, within HMPREF1078_RS00510 at 118.992 kb on + strand, within HMPREF1078_RS00510 at 118.992 kb on + strand, within HMPREF1078_RS00510 at 118.996 kb on + strand, within HMPREF1078_RS00510 at 118.996 kb on + strand, within HMPREF1078_RS00510 at 118.997 kb on - strand, within HMPREF1078_RS00510 at 119.015 kb on - strand, within HMPREF1078_RS00510 at 119.076 kb on + strand, within HMPREF1078_RS00510 at 119.076 kb on + strand, within HMPREF1078_RS00510 at 119.090 kb on + strand, within HMPREF1078_RS00510 at 119.132 kb on + strand, within HMPREF1078_RS00510 at 119.132 kb on + strand, within HMPREF1078_RS00510 at 119.163 kb on + strand, within HMPREF1078_RS00510 at 119.163 kb on + strand, within HMPREF1078_RS00510 at 119.164 kb on - strand, within HMPREF1078_RS00510 at 119.164 kb on - strand, within HMPREF1078_RS00510 at 119.168 kb on + strand, within HMPREF1078_RS00510 at 119.169 kb on - strand, within HMPREF1078_RS00510 at 119.169 kb on - strand, within HMPREF1078_RS00510 at 119.185 kb on + strand at 119.215 kb on + strand at 119.225 kb on + strand at 119.226 kb on - strand at 119.227 kb on + strand at 119.227 kb on + strand at 119.227 kb on + strand at 119.228 kb on - strand at 119.231 kb on + strand at 119.231 kb on + strand at 119.231 kb on + strand at 119.231 kb on + strand at 119.231 kb on + strand at 119.232 kb on - strand at 119.232 kb on - strand at 119.232 kb on - strand at 119.232 kb on - strand at 119.232 kb on - strand at 119.236 kb on + strand at 119.236 kb on + strand at 119.238 kb on + strand at 119.238 kb on + strand at 119.239 kb on - strand at 119.244 kb on - strand at 119.244 kb on - strand at 119.245 kb on + strand at 119.254 kb on - strand at 119.298 kb on + strand at 119.299 kb on - strand at 119.331 kb on + strand, within HMPREF1078_RS00515 at 119.334 kb on + strand, within HMPREF1078_RS00515 at 119.334 kb on + strand, within HMPREF1078_RS00515 at 119.335 kb on - strand, within HMPREF1078_RS00515 at 119.344 kb on - strand, within HMPREF1078_RS00515 at 119.350 kb on - strand, within HMPREF1078_RS00515 at 119.350 kb on - strand, within HMPREF1078_RS00515 at 119.381 kb on + strand, within HMPREF1078_RS00515 at 119.381 kb on + strand, within HMPREF1078_RS00515 at 119.382 kb on - strand, within HMPREF1078_RS00515 at 119.409 kb on + strand, within HMPREF1078_RS00515 at 119.409 kb on + strand, within HMPREF1078_RS00515 at 119.412 kb on + strand, within HMPREF1078_RS00515 at 119.508 kb on + strand, within HMPREF1078_RS00515 at 119.508 kb on + strand, within HMPREF1078_RS00515 at 119.508 kb on + strand, within HMPREF1078_RS00515 at 119.508 kb on + strand, within HMPREF1078_RS00515 at 119.509 kb on - strand, within HMPREF1078_RS00515 at 119.509 kb on - strand, within HMPREF1078_RS00515 at 119.509 kb on - strand, within HMPREF1078_RS00515 at 119.509 kb on - strand, within HMPREF1078_RS00515 at 119.509 kb on - strand, within HMPREF1078_RS00515 at 119.565 kb on + strand, within HMPREF1078_RS00515 at 119.565 kb on + strand, within HMPREF1078_RS00515 at 119.566 kb on - strand, within HMPREF1078_RS00515 at 119.694 kb on + strand, within HMPREF1078_RS00515 at 119.701 kb on - strand, within HMPREF1078_RS00515 at 119.703 kb on + strand, within HMPREF1078_RS00515
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 116,039 + HMPREF1078_RS00500 0.67 -0.6 116,039 + HMPREF1078_RS00500 0.67 -2.2 116,040 - HMPREF1078_RS00500 0.67 +0.6 116,105 + HMPREF1078_RS00500 0.69 -0.1 116,118 - HMPREF1078_RS00500 0.70 +0.4 116,184 - HMPREF1078_RS00500 0.72 +0.4 116,202 - HMPREF1078_RS00500 0.73 -1.5 116,260 - HMPREF1078_RS00500 0.75 -2.6 116,359 + HMPREF1078_RS00500 0.79 -0.6 116,359 + HMPREF1078_RS00500 0.79 -0.8 116,360 - HMPREF1078_RS00500 0.79 +0.2 116,360 - HMPREF1078_RS00500 0.79 -0.5 116,360 - HMPREF1078_RS00500 0.79 -0.8 116,409 - HMPREF1078_RS00500 0.81 -0.4 116,435 + HMPREF1078_RS00500 0.82 -0.4 116,444 + HMPREF1078_RS00500 0.82 -0.6 116,447 + HMPREF1078_RS00500 0.83 -0.1 116,447 + HMPREF1078_RS00500 0.83 +0.7 116,496 - HMPREF1078_RS00500 0.84 -0.4 116,709 - -0.4 116,709 - -1.7 116,793 + +0.0 116,794 - +0.1 116,917 + -1.5 116,917 + -2.2 116,917 + +1.9 116,918 - -2.5 116,919 + -1.0 116,919 + -0.8 116,926 - +0.6 116,926 - +0.7 116,983 + +0.3 116,983 + -0.3 117,005 + -2.9 117,006 - +2.5 117,325 - HMPREF1078_RS00505 0.19 +1.5 117,326 + HMPREF1078_RS00505 0.19 +0.5 117,434 + HMPREF1078_RS00505 0.25 +0.6 117,596 - HMPREF1078_RS00505 0.35 +0.9 117,674 + HMPREF1078_RS00505 0.39 -0.7 117,680 - HMPREF1078_RS00505 0.39 +0.1 117,708 + HMPREF1078_RS00505 0.41 -1.4 118,263 + HMPREF1078_RS00505 0.74 +2.5 118,264 - HMPREF1078_RS00505 0.74 -0.4 118,691 + -0.6 118,692 - +0.9 118,710 + +0.1 118,728 - -2.2 118,734 - -0.5 118,740 + -1.1 118,749 + -0.4 118,763 - -0.7 118,772 - +0.0 118,777 + -0.1 118,777 + +0.1 118,777 + +0.6 118,778 - +0.8 118,785 - -1.4 118,858 + -0.4 118,858 + -0.5 118,859 - +0.2 118,866 - +1.3 118,887 + -0.4 118,887 + -1.5 118,908 - +1.2 118,913 - +0.1 118,932 - HMPREF1078_RS00510 0.13 +1.0 118,948 + HMPREF1078_RS00510 0.18 -1.5 118,948 + HMPREF1078_RS00510 0.18 -0.5 118,992 + HMPREF1078_RS00510 0.32 -0.4 118,992 + HMPREF1078_RS00510 0.32 -1.0 118,996 + HMPREF1078_RS00510 0.33 +0.6 118,996 + HMPREF1078_RS00510 0.33 -0.1 118,997 - HMPREF1078_RS00510 0.33 -0.9 119,015 - HMPREF1078_RS00510 0.39 -0.1 119,076 + HMPREF1078_RS00510 0.57 +0.0 119,076 + HMPREF1078_RS00510 0.57 -0.4 119,090 + HMPREF1078_RS00510 0.62 -0.9 119,132 + HMPREF1078_RS00510 0.75 +0.3 119,132 + HMPREF1078_RS00510 0.75 -0.5 119,163 + HMPREF1078_RS00510 0.84 -1.5 119,163 + HMPREF1078_RS00510 0.84 +0.5 119,164 - HMPREF1078_RS00510 0.84 +0.5 119,164 - HMPREF1078_RS00510 0.84 -0.3 119,168 + HMPREF1078_RS00510 0.86 +0.7 119,169 - HMPREF1078_RS00510 0.86 -0.6 119,169 - HMPREF1078_RS00510 0.86 -0.5 119,185 + -0.5 119,215 + +0.0 119,225 + +0.2 119,226 - -0.9 119,227 + +0.4 119,227 + -1.3 119,227 + -0.2 119,228 - -0.1 119,231 + +0.3 119,231 + +0.4 119,231 + -0.3 119,231 + -0.4 119,231 + +0.7 119,232 - -0.2 119,232 - +0.4 119,232 - -1.0 119,232 - +0.6 119,232 - -1.6 119,236 + -0.5 119,236 + +0.6 119,238 + -0.4 119,238 + -0.2 119,239 - +0.9 119,244 - -0.2 119,244 - +0.1 119,245 + +0.5 119,254 - +0.3 119,298 + -0.5 119,299 - -0.4 119,331 + HMPREF1078_RS00515 0.10 +1.0 119,334 + HMPREF1078_RS00515 0.11 -0.2 119,334 + HMPREF1078_RS00515 0.11 +1.2 119,335 - HMPREF1078_RS00515 0.11 +0.2 119,344 - HMPREF1078_RS00515 0.12 +2.0 119,350 - HMPREF1078_RS00515 0.13 +0.8 119,350 - HMPREF1078_RS00515 0.13 +0.3 119,381 + HMPREF1078_RS00515 0.18 -2.1 119,381 + HMPREF1078_RS00515 0.18 -0.6 119,382 - HMPREF1078_RS00515 0.18 -0.5 119,409 + HMPREF1078_RS00515 0.22 -0.4 119,409 + HMPREF1078_RS00515 0.22 +1.1 119,412 + HMPREF1078_RS00515 0.22 +2.0 119,508 + HMPREF1078_RS00515 0.36 +0.1 119,508 + HMPREF1078_RS00515 0.36 -1.2 119,508 + HMPREF1078_RS00515 0.36 +0.8 119,508 + HMPREF1078_RS00515 0.36 +0.2 119,509 - HMPREF1078_RS00515 0.36 -0.6 119,509 - HMPREF1078_RS00515 0.36 -0.1 119,509 - HMPREF1078_RS00515 0.36 -0.1 119,509 - HMPREF1078_RS00515 0.36 -0.4 119,509 - HMPREF1078_RS00515 0.36 -0.7 119,565 + HMPREF1078_RS00515 0.45 +0.3 119,565 + HMPREF1078_RS00515 0.45 +0.7 119,566 - HMPREF1078_RS00515 0.45 -0.1 119,694 + HMPREF1078_RS00515 0.63 -0.6 119,701 - HMPREF1078_RS00515 0.64 -0.7 119,703 + HMPREF1078_RS00515 0.65 +2.5
Or see this region's nucleotide sequence