Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00500

Experiment: marine_broth_2216 1 x (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine_broth_2216 1 x (C)
113,396	-		HMPREF1078_RS00490	0.86	+0.6
113,498	-				+0.7
113,529	+				+0.9
113,600	+				-0.2
113,654	-				-0.2
113,655	+				-1.9
113,655	+				+0.5
113,655	+				-1.4
113,656	-				-0.1
113,656	-				-2.3
113,657	+				+0.8
113,657	+				-1.0
113,657	+				-1.1
113,657	+				+0.3
113,658	-				+0.2
113,658	-				+0.1
113,658	-				+1.4
113,658	-				-0.7
113,658	-				+1.1
113,659	+				-0.8
113,659	+				-1.0
113,659	+				-0.3
113,659	+				-2.0
113,660	-				-0.9
113,660	-				-2.3
113,660	-				+0.2
113,680	+				-0.7
113,724	-				-2.0
113,724	-				+0.4
113,725	+				-1.1
113,732	+		HMPREF1078_RS00495	0.10	+1.0
113,774	+		HMPREF1078_RS00495	0.22	-1.1
113,777	+		HMPREF1078_RS00495	0.23	+1.3
113,777	+		HMPREF1078_RS00495	0.23	-0.5
113,777	+		HMPREF1078_RS00495	0.23	-0.1
113,778	-		HMPREF1078_RS00495	0.23	+1.2
113,870	+		HMPREF1078_RS00495	0.49	-0.7
113,870	+		HMPREF1078_RS00495	0.49	-0.1
113,870	+		HMPREF1078_RS00495	0.49	+0.1
113,871	-		HMPREF1078_RS00495	0.49	-1.2
113,884	-		HMPREF1078_RS00495	0.53	-2.1
113,947	+		HMPREF1078_RS00495	0.70	+0.4
113,948	-		HMPREF1078_RS00495	0.71	+1.5
113,948	-		HMPREF1078_RS00495	0.71	-0.6
113,950	-		HMPREF1078_RS00495	0.71	+0.6
113,950	-		HMPREF1078_RS00495	0.71	-0.5
113,960	+		HMPREF1078_RS00495	0.74	+0.5
113,960	+		HMPREF1078_RS00495	0.74	+0.7
113,961	-		HMPREF1078_RS00495	0.74	-0.0
113,961	-		HMPREF1078_RS00495	0.74	-0.7
113,961	-		HMPREF1078_RS00495	0.74	-2.8
113,962	+		HMPREF1078_RS00495	0.75	-0.3
113,962	+		HMPREF1078_RS00495	0.75	+0.9
114,001	+		HMPREF1078_RS00495	0.85	-1.1
114,002	-		HMPREF1078_RS00495	0.86	+0.8
114,002	-		HMPREF1078_RS00495	0.86	+0.7
114,007	-		HMPREF1078_RS00495	0.87	-0.3
114,026	+				-1.1
114,027	-				-1.2
114,027	-				-1.2
114,027	-				-2.0
114,027	-				+0.6
114,044	-				+0.8
114,056	+				+2.6
114,069	+				-1.4
114,073	-				-2.1
114,074	+				-0.7
114,074	+				-0.0
114,075	-				+0.2
114,110	-				-0.7
114,211	+				-1.3
114,301	-				-0.5
114,302	+				-0.1
114,327	-				+0.5
114,404	-				+0.0
114,435	+				+0.9
114,529	+				-2.3
114,529	+				+0.5
114,530	-				+0.3
114,546	+				+0.7
114,547	-				+1.1
114,566	+				+0.5
114,615	+		HMPREF1078_RS00500	0.12	-0.4
114,615	+		HMPREF1078_RS00500	0.12	+0.2
114,616	-		HMPREF1078_RS00500	0.12	+0.8
114,616	-		HMPREF1078_RS00500	0.12	-0.3
114,710	-		HMPREF1078_RS00500	0.15	-2.1
114,749	-		HMPREF1078_RS00500	0.17	-1.5
114,774	+		HMPREF1078_RS00500	0.18	+0.2
114,774	+		HMPREF1078_RS00500	0.18	-1.8
114,774	+		HMPREF1078_RS00500	0.18	+0.2
114,774	+		HMPREF1078_RS00500	0.18	-0.9
114,774	+		HMPREF1078_RS00500	0.18	-1.8
114,774	+		HMPREF1078_RS00500	0.18	-0.4
114,774	+		HMPREF1078_RS00500	0.18	+0.0
114,774	+		HMPREF1078_RS00500	0.18	-0.2
114,774	+		HMPREF1078_RS00500	0.18	+0.6
114,774	+		HMPREF1078_RS00500	0.18	-1.5
114,774	+		HMPREF1078_RS00500	0.18	-0.0
114,775	-		HMPREF1078_RS00500	0.18	-0.3
114,775	-		HMPREF1078_RS00500	0.18	+0.3
114,775	-		HMPREF1078_RS00500	0.18	-1.9
114,775	-		HMPREF1078_RS00500	0.18	-0.1
114,775	-		HMPREF1078_RS00500	0.18	-0.6
114,776	-		HMPREF1078_RS00500	0.18	-1.8
114,792	+		HMPREF1078_RS00500	0.19	+0.5
114,792	+		HMPREF1078_RS00500	0.19	+0.2
114,793	-		HMPREF1078_RS00500	0.19	+2.1
114,893	+		HMPREF1078_RS00500	0.23	-0.4
114,968	+		HMPREF1078_RS00500	0.25	+0.3
114,969	-		HMPREF1078_RS00500	0.25	-1.1
115,056	-		HMPREF1078_RS00500	0.29	-0.2
115,145	+		HMPREF1078_RS00500	0.32	-0.1
115,145	+		HMPREF1078_RS00500	0.32	-1.0
115,257	+		HMPREF1078_RS00500	0.37	-1.7
115,257	+		HMPREF1078_RS00500	0.37	-1.1
115,258	-		HMPREF1078_RS00500	0.37	+0.1
115,267	-		HMPREF1078_RS00500	0.37	-0.2
115,278	+		HMPREF1078_RS00500	0.37	-0.4
115,280	+		HMPREF1078_RS00500	0.38	-1.9
115,311	-		HMPREF1078_RS00500	0.39	-0.2
115,440	+		HMPREF1078_RS00500	0.44	-1.3
115,703	+		HMPREF1078_RS00500	0.54	-0.0
115,703	+		HMPREF1078_RS00500	0.54	-0.7
115,703	+		HMPREF1078_RS00500	0.54	-2.2
115,921	+		HMPREF1078_RS00500	0.62	-1.2
115,922	-		HMPREF1078_RS00500	0.62	-0.9
115,922	-		HMPREF1078_RS00500	0.62	+1.1
116,039	+		HMPREF1078_RS00500	0.67	-0.6
116,039	+		HMPREF1078_RS00500	0.67	-2.2
116,040	-		HMPREF1078_RS00500	0.67	+0.6
116,105	+		HMPREF1078_RS00500	0.69	-0.1
116,118	-		HMPREF1078_RS00500	0.70	+0.4
116,184	-		HMPREF1078_RS00500	0.72	+0.4
116,202	-		HMPREF1078_RS00500	0.73	-1.5
116,260	-		HMPREF1078_RS00500	0.75	-2.6
116,359	+		HMPREF1078_RS00500	0.79	-0.6
116,359	+		HMPREF1078_RS00500	0.79	-0.8
116,360	-		HMPREF1078_RS00500	0.79	+0.2
116,360	-		HMPREF1078_RS00500	0.79	-0.5
116,360	-		HMPREF1078_RS00500	0.79	-0.8
116,409	-		HMPREF1078_RS00500	0.81	-0.4
116,435	+		HMPREF1078_RS00500	0.82	-0.4
116,444	+		HMPREF1078_RS00500	0.82	-0.6
116,447	+		HMPREF1078_RS00500	0.83	-0.1
116,447	+		HMPREF1078_RS00500	0.83	+0.7
116,496	-		HMPREF1078_RS00500	0.84	-0.4
116,709	-				-0.4
116,709	-				-1.7
116,793	+				+0.0
116,794	-				+0.1
116,917	+				-1.5
116,917	+				-2.2
116,917	+				+1.9
116,918	-				-2.5
116,919	+				-1.0
116,919	+				-0.8
116,926	-				+0.6
116,926	-				+0.7
116,983	+				+0.3
116,983	+				-0.3
117,005	+				-2.9
117,006	-				+2.5
117,325	-		HMPREF1078_RS00505	0.19	+1.5
117,326	+		HMPREF1078_RS00505	0.19	+0.5
117,434	+		HMPREF1078_RS00505	0.25	+0.6
117,596	-		HMPREF1078_RS00505	0.35	+0.9
117,674	+		HMPREF1078_RS00505	0.39	-0.7
117,680	-		HMPREF1078_RS00505	0.39	+0.1
117,708	+		HMPREF1078_RS00505	0.41	-1.4