Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00210

Experiment: marine_broth_2216 1 x (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine_broth_2216 1 x (C)
47,259	+				-0.4
47,261	+				-0.7
47,261	+				+0.9
47,261	+				+2.0
47,377	+		HMPREF1078_RS00200	0.30	+0.6
47,458	+		HMPREF1078_RS00200	0.50	+0.9
47,474	+		HMPREF1078_RS00200	0.53	+0.2
47,595	+		HMPREF1078_RS00200	0.82	-0.4
47,628	+				+0.6
47,628	+				-0.5
47,652	+				-0.4
47,659	+				-1.5
47,659	+				-1.7
47,666	+				+0.1
47,675	+				-0.1
48,176	+		HMPREF1078_RS00205	0.90	+0.1
48,185	+				+0.5
48,227	+				-0.2
48,228	-				-0.9
48,231	+				-1.2
48,231	+				+0.2
48,231	+				-0.8
48,231	+				-0.7
48,231	+				-0.0
48,243	+				+0.4
48,243	+				-2.1
48,243	+				-0.1
48,247	-				-0.1
48,247	-				-0.1
48,251	-				+2.5
48,272	+				+2.5
48,380	+				-0.1
48,417	+		HMPREF1078_RS00210	0.10	+0.1
48,527	+		HMPREF1078_RS00210	0.17	-1.4
48,527	+		HMPREF1078_RS00210	0.17	+1.1
48,531	+		HMPREF1078_RS00210	0.18	+0.9
48,532	-		HMPREF1078_RS00210	0.18	-0.8
48,584	+		HMPREF1078_RS00210	0.21	-1.1
48,584	+		HMPREF1078_RS00210	0.21	-0.1
48,585	-		HMPREF1078_RS00210	0.21	-1.0
48,639	-		HMPREF1078_RS00210	0.25	+1.5
48,662	+		HMPREF1078_RS00210	0.26	-0.1
48,663	-		HMPREF1078_RS00210	0.26	+1.7
48,676	+		HMPREF1078_RS00210	0.27	-0.5
48,677	-		HMPREF1078_RS00210	0.27	-0.1
48,703	+		HMPREF1078_RS00210	0.29	-0.1
48,703	+		HMPREF1078_RS00210	0.29	-0.5
48,716	+		HMPREF1078_RS00210	0.30	-0.5
48,734	+		HMPREF1078_RS00210	0.31	+0.1
48,783	+		HMPREF1078_RS00210	0.34	-0.1
48,783	+		HMPREF1078_RS00210	0.34	+0.9
48,824	+		HMPREF1078_RS00210	0.37	+0.9
48,843	-		HMPREF1078_RS00210	0.38	-1.7
48,843	-		HMPREF1078_RS00210	0.38	+0.1
48,843	-		HMPREF1078_RS00210	0.38	+4.5
48,888	-		HMPREF1078_RS00210	0.41	-0.1
49,033	+		HMPREF1078_RS00210	0.50	+0.9
49,113	-		HMPREF1078_RS00210	0.55	-0.5
49,230	-		HMPREF1078_RS00210	0.63	+1.7
49,255	+		HMPREF1078_RS00210	0.64	-1.5
49,322	+		HMPREF1078_RS00210	0.69	+0.5
49,322	+		HMPREF1078_RS00210	0.69	-0.1
49,340	+		HMPREF1078_RS00210	0.70	-0.7
49,340	+		HMPREF1078_RS00210	0.70	+1.9
49,341	-		HMPREF1078_RS00210	0.70	-0.7
49,410	+		HMPREF1078_RS00210	0.74	+0.9
49,442	+		HMPREF1078_RS00210	0.76	-1.8
49,641	+		HMPREF1078_RS00210	0.89	-0.9
49,642	-		HMPREF1078_RS00210	0.89	-1.1
49,803	+				+1.4
49,857	+				+0.1
49,888	-		HMPREF1078_RS00215	0.17	+2.5
49,935	-		HMPREF1078_RS00215	0.32	+1.5
49,994	-		HMPREF1078_RS00215	0.49	-0.4
50,055	+		HMPREF1078_RS00215	0.68	-0.1
50,055	+		HMPREF1078_RS00215	0.68	-0.9
50,055	+		HMPREF1078_RS00215	0.68	-0.7
50,104	+		HMPREF1078_RS00215	0.82	+0.3
50,117	+		HMPREF1078_RS00215	0.86	-0.4
50,117	+		HMPREF1078_RS00215	0.86	-0.1
50,118	-		HMPREF1078_RS00215	0.86	+0.1
50,160	+				+1.5
50,161	-				+1.5
50,161	-				+0.5
50,174	-				+0.2
50,182	-				-1.1
50,182	-				-0.2
50,205	-				+1.6
50,205	-				-1.1
50,228	+				-1.4
50,229	-				+0.4
50,246	+				+0.1
50,247	-				+0.3
50,253	-				+0.1
50,256	+				-0.8
50,257	-				-0.0
50,286	+				+0.4
50,286	+				-0.5
50,292	+				+0.8
50,294	+				-0.4
50,297	+				-0.1
50,298	-				+0.7
50,298	-				+0.1
50,319	+				-0.3
50,323	+				+0.9
50,324	-				+0.9
50,326	-				-0.5
50,402	+				+0.2
50,403	-				-0.7
50,414	+				-0.6
50,414	+				-2.0
50,415	-				+0.2
50,433	-				-0.1
50,477	+				+0.7
50,478	-				-0.4
50,483	+				-0.8
50,516	+		HMPREF1078_RS00220	0.10	+1.8
50,516	+		HMPREF1078_RS00220	0.10	+1.0
50,517	-		HMPREF1078_RS00220	0.10	+0.1
50,518	+		HMPREF1078_RS00220	0.10	+0.5
50,518	+		HMPREF1078_RS00220	0.10	-0.5
50,519	-		HMPREF1078_RS00220	0.10	-0.3
50,539	+		HMPREF1078_RS00220	0.11	-0.1
50,539	+		HMPREF1078_RS00220	0.11	-0.4
50,540	-		HMPREF1078_RS00220	0.11	-0.4
50,540	-		HMPREF1078_RS00220	0.11	-0.2
50,579	+		HMPREF1078_RS00220	0.13	-0.8
50,579	+		HMPREF1078_RS00220	0.13	+1.3
50,579	+		HMPREF1078_RS00220	0.13	+1.9
50,582	+		HMPREF1078_RS00220	0.13	-0.7
50,583	-		HMPREF1078_RS00220	0.13	+0.5
50,583	-		HMPREF1078_RS00220	0.13	+0.4
50,583	-		HMPREF1078_RS00220	0.13	-0.1
50,631	+		HMPREF1078_RS00220	0.16	-0.1
50,631	+		HMPREF1078_RS00220	0.16	+0.1
50,640	-		HMPREF1078_RS00220	0.16	-0.6
50,640	-		HMPREF1078_RS00220	0.16	-0.2
50,772	-		HMPREF1078_RS00220	0.22	-0.2
50,776	+		HMPREF1078_RS00220	0.22	+0.3
50,776	+		HMPREF1078_RS00220	0.22	+0.5
50,777	-		HMPREF1078_RS00220	0.22	+0.1
50,777	-		HMPREF1078_RS00220	0.22	+1.1
50,783	+		HMPREF1078_RS00220	0.23	+1.2
50,784	-		HMPREF1078_RS00220	0.23	-0.1
50,784	-		HMPREF1078_RS00220	0.23	+1.1
50,804	+		HMPREF1078_RS00220	0.24	+0.5
50,804	+		HMPREF1078_RS00220	0.24	-1.7