Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16065 and HMPREF1078_RS16070 are separated by 98 nucleotides HMPREF1078_RS16070 and HMPREF1078_RS16075 are separated by 63 nucleotides
HMPREF1078_RS16065: HMPREF1078_RS16065 - class II fructose-1,6-bisphosphate aldolase, at 337,142 to 338,140
_RS16065
HMPREF1078_RS16070: HMPREF1078_RS16070 - DUF4923 family protein, at 338,239 to 338,859
_RS16070
HMPREF1078_RS16075: HMPREF1078_RS16075 - AAA family ATPase, at 338,923 to 341,049
_RS16075
Position (kb) 338
339 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 338.138 kb on + strand at 338.138 kb on + strand at 338.161 kb on + strand at 338.161 kb on + strand at 338.161 kb on + strand at 338.161 kb on + strand at 338.162 kb on - strand at 338.163 kb on + strand at 338.163 kb on + strand at 338.164 kb on - strand at 338.164 kb on - strand at 338.164 kb on - strand at 338.164 kb on - strand at 338.164 kb on - strand at 338.193 kb on + strand at 338.194 kb on - strand at 338.212 kb on + strand at 338.212 kb on + strand at 338.213 kb on - strand at 338.213 kb on - strand at 338.213 kb on - strand at 338.213 kb on - strand at 338.214 kb on + strand at 338.215 kb on - strand at 338.215 kb on - strand at 338.224 kb on + strand at 338.224 kb on + strand at 338.224 kb on + strand at 338.225 kb on - strand at 338.225 kb on - strand at 338.225 kb on - strand at 338.225 kb on - strand at 338.234 kb on + strand at 338.234 kb on + strand at 338.277 kb on + strand at 338.277 kb on + strand at 338.277 kb on + strand at 338.279 kb on + strand at 338.279 kb on + strand at 338.279 kb on + strand at 338.279 kb on + strand at 338.280 kb on - strand at 338.280 kb on - strand at 338.302 kb on + strand, within HMPREF1078_RS16070 at 338.316 kb on + strand, within HMPREF1078_RS16070 at 338.403 kb on + strand, within HMPREF1078_RS16070 at 338.413 kb on + strand, within HMPREF1078_RS16070 at 338.413 kb on + strand, within HMPREF1078_RS16070 at 338.413 kb on + strand, within HMPREF1078_RS16070 at 338.414 kb on - strand, within HMPREF1078_RS16070 at 338.414 kb on - strand, within HMPREF1078_RS16070 at 338.414 kb on - strand, within HMPREF1078_RS16070 at 338.414 kb on - strand, within HMPREF1078_RS16070 at 338.414 kb on - strand, within HMPREF1078_RS16070 at 338.509 kb on + strand, within HMPREF1078_RS16070 at 338.510 kb on - strand, within HMPREF1078_RS16070 at 338.510 kb on - strand, within HMPREF1078_RS16070 at 338.528 kb on + strand, within HMPREF1078_RS16070 at 338.529 kb on - strand, within HMPREF1078_RS16070 at 338.550 kb on + strand, within HMPREF1078_RS16070 at 338.556 kb on + strand, within HMPREF1078_RS16070 at 338.557 kb on - strand, within HMPREF1078_RS16070 at 338.607 kb on + strand, within HMPREF1078_RS16070 at 338.608 kb on - strand, within HMPREF1078_RS16070 at 338.608 kb on - strand, within HMPREF1078_RS16070 at 338.611 kb on + strand, within HMPREF1078_RS16070 at 338.611 kb on + strand, within HMPREF1078_RS16070 at 338.611 kb on + strand, within HMPREF1078_RS16070 at 338.632 kb on - strand, within HMPREF1078_RS16070 at 338.632 kb on - strand, within HMPREF1078_RS16070 at 338.664 kb on + strand, within HMPREF1078_RS16070 at 338.792 kb on + strand, within HMPREF1078_RS16070 at 338.792 kb on + strand, within HMPREF1078_RS16070 at 338.793 kb on - strand, within HMPREF1078_RS16070 at 338.793 kb on - strand, within HMPREF1078_RS16070 at 338.806 kb on - strand at 338.806 kb on - strand at 338.806 kb on - strand at 338.821 kb on + strand at 338.822 kb on - strand at 338.822 kb on - strand at 338.861 kb on + strand at 338.861 kb on + strand at 338.861 kb on + strand at 338.873 kb on - strand at 338.894 kb on + strand at 338.895 kb on - strand at 338.901 kb on - strand at 338.904 kb on - strand at 338.904 kb on - strand at 338.904 kb on - strand at 338.905 kb on + strand at 338.905 kb on + strand at 338.906 kb on - strand at 338.906 kb on - strand at 338.906 kb on - strand at 338.940 kb on - strand at 338.940 kb on - strand at 338.947 kb on + strand at 338.948 kb on - strand at 339.080 kb on + strand at 339.080 kb on + strand at 339.080 kb on + strand at 339.137 kb on + strand, within HMPREF1078_RS16075 at 339.138 kb on - strand, within HMPREF1078_RS16075 at 339.139 kb on + strand, within HMPREF1078_RS16075 at 339.139 kb on + strand, within HMPREF1078_RS16075 at 339.139 kb on + strand, within HMPREF1078_RS16075 at 339.140 kb on - strand, within HMPREF1078_RS16075 at 339.140 kb on - strand, within HMPREF1078_RS16075 at 339.140 kb on - strand, within HMPREF1078_RS16075 at 339.140 kb on - strand, within HMPREF1078_RS16075 at 339.140 kb on - strand, within HMPREF1078_RS16075 at 339.140 kb on - strand, within HMPREF1078_RS16075 at 339.167 kb on - strand, within HMPREF1078_RS16075 at 339.424 kb on + strand, within HMPREF1078_RS16075 at 339.424 kb on + strand, within HMPREF1078_RS16075 at 339.425 kb on - strand, within HMPREF1078_RS16075 at 339.580 kb on - strand, within HMPREF1078_RS16075 at 339.580 kb on - strand, within HMPREF1078_RS16075 at 339.584 kb on + strand, within HMPREF1078_RS16075 at 339.585 kb on - strand, within HMPREF1078_RS16075 at 339.608 kb on - strand, within HMPREF1078_RS16075 at 339.608 kb on - strand, within HMPREF1078_RS16075 at 339.627 kb on - strand, within HMPREF1078_RS16075 at 339.644 kb on + strand, within HMPREF1078_RS16075 at 339.645 kb on - strand, within HMPREF1078_RS16075 at 339.645 kb on - strand, within HMPREF1078_RS16075 at 339.650 kb on - strand, within HMPREF1078_RS16075 at 339.704 kb on + strand, within HMPREF1078_RS16075 at 339.705 kb on - strand, within HMPREF1078_RS16075 at 339.785 kb on + strand, within HMPREF1078_RS16075
Per-strain Table
Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C) remove 338,138 + -1.9 338,138 + +2.1 338,161 + +0.4 338,161 + -0.1 338,161 + -1.8 338,161 + +0.8 338,162 - -1.0 338,163 + -0.0 338,163 + +0.2 338,164 - +0.3 338,164 - +1.5 338,164 - +0.3 338,164 - +0.8 338,164 - -0.3 338,193 + -0.2 338,194 - +0.3 338,212 + -1.0 338,212 + +0.2 338,213 - -0.4 338,213 - +1.2 338,213 - +0.3 338,213 - -0.9 338,214 + -1.1 338,215 - -0.6 338,215 - +1.2 338,224 + -1.2 338,224 + +0.5 338,224 + -1.2 338,225 - -2.1 338,225 - +0.0 338,225 - +0.7 338,225 - -1.2 338,234 + -0.2 338,234 + -0.2 338,277 + +0.5 338,277 + -0.6 338,277 + +0.8 338,279 + +1.1 338,279 + -0.0 338,279 + -1.1 338,279 + +0.9 338,280 - -0.7 338,280 - +0.4 338,302 + HMPREF1078_RS16070 0.10 -3.0 338,316 + HMPREF1078_RS16070 0.12 -1.8 338,403 + HMPREF1078_RS16070 0.26 +0.6 338,413 + HMPREF1078_RS16070 0.28 -0.8 338,413 + HMPREF1078_RS16070 0.28 +0.1 338,413 + HMPREF1078_RS16070 0.28 +0.6 338,414 - HMPREF1078_RS16070 0.28 -1.2 338,414 - HMPREF1078_RS16070 0.28 -0.6 338,414 - HMPREF1078_RS16070 0.28 -1.2 338,414 - HMPREF1078_RS16070 0.28 -2.0 338,414 - HMPREF1078_RS16070 0.28 -0.7 338,509 + HMPREF1078_RS16070 0.43 -1.3 338,510 - HMPREF1078_RS16070 0.44 -0.6 338,510 - HMPREF1078_RS16070 0.44 +2.2 338,528 + HMPREF1078_RS16070 0.47 -3.9 338,529 - HMPREF1078_RS16070 0.47 -3.3 338,550 + HMPREF1078_RS16070 0.50 +1.4 338,556 + HMPREF1078_RS16070 0.51 -2.4 338,557 - HMPREF1078_RS16070 0.51 -2.6 338,607 + HMPREF1078_RS16070 0.59 -1.2 338,608 - HMPREF1078_RS16070 0.59 +1.0 338,608 - HMPREF1078_RS16070 0.59 +0.4 338,611 + HMPREF1078_RS16070 0.60 +1.0 338,611 + HMPREF1078_RS16070 0.60 +0.1 338,611 + HMPREF1078_RS16070 0.60 +0.8 338,632 - HMPREF1078_RS16070 0.63 +1.7 338,632 - HMPREF1078_RS16070 0.63 -0.3 338,664 + HMPREF1078_RS16070 0.68 -1.5 338,792 + HMPREF1078_RS16070 0.89 -0.3 338,792 + HMPREF1078_RS16070 0.89 +0.9 338,793 - HMPREF1078_RS16070 0.89 +1.6 338,793 - HMPREF1078_RS16070 0.89 +1.2 338,806 - -0.7 338,806 - -0.5 338,806 - +0.5 338,821 + -0.1 338,822 - -1.0 338,822 - +1.4 338,861 + -1.6 338,861 + -1.1 338,861 + +0.6 338,873 - -0.7 338,894 + -1.0 338,895 - -2.0 338,901 - -0.4 338,904 - -0.6 338,904 - +0.6 338,904 - +0.2 338,905 + -0.8 338,905 + -1.3 338,906 - +1.1 338,906 - -0.2 338,906 - +0.3 338,940 - +0.2 338,940 - +1.2 338,947 + -0.3 338,948 - -0.1 339,080 + -0.7 339,080 + +1.6 339,080 + -1.9 339,137 + HMPREF1078_RS16075 0.10 -0.2 339,138 - HMPREF1078_RS16075 0.10 -0.1 339,139 + HMPREF1078_RS16075 0.10 -2.1 339,139 + HMPREF1078_RS16075 0.10 -0.8 339,139 + HMPREF1078_RS16075 0.10 -1.0 339,140 - HMPREF1078_RS16075 0.10 -0.5 339,140 - HMPREF1078_RS16075 0.10 -0.8 339,140 - HMPREF1078_RS16075 0.10 -1.2 339,140 - HMPREF1078_RS16075 0.10 -0.3 339,140 - HMPREF1078_RS16075 0.10 -1.8 339,140 - HMPREF1078_RS16075 0.10 -0.4 339,167 - HMPREF1078_RS16075 0.11 -1.2 339,424 + HMPREF1078_RS16075 0.24 -2.4 339,424 + HMPREF1078_RS16075 0.24 +0.3 339,425 - HMPREF1078_RS16075 0.24 +0.7 339,580 - HMPREF1078_RS16075 0.31 -0.5 339,580 - HMPREF1078_RS16075 0.31 +1.4 339,584 + HMPREF1078_RS16075 0.31 -0.2 339,585 - HMPREF1078_RS16075 0.31 -1.8 339,608 - HMPREF1078_RS16075 0.32 +0.6 339,608 - HMPREF1078_RS16075 0.32 +1.4 339,627 - HMPREF1078_RS16075 0.33 +0.6 339,644 + HMPREF1078_RS16075 0.34 +0.3 339,645 - HMPREF1078_RS16075 0.34 -2.0 339,645 - HMPREF1078_RS16075 0.34 -0.8 339,650 - HMPREF1078_RS16075 0.34 -0.2 339,704 + HMPREF1078_RS16075 0.37 +0.6 339,705 - HMPREF1078_RS16075 0.37 -1.8 339,785 + HMPREF1078_RS16075 0.41 +0.8
Or see this region's nucleotide sequence