Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15825 and HMPREF1078_RS15830 are separated by 18 nucleotides HMPREF1078_RS15830 and HMPREF1078_RS15835 are separated by 93 nucleotides HMPREF1078_RS15835 and HMPREF1078_RS15840 are separated by 51 nucleotides
HMPREF1078_RS15825: HMPREF1078_RS15825 - ketoacyl-ACP synthase III, at 280,837 to 281,781
_RS15825
HMPREF1078_RS15830: HMPREF1078_RS15830 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 281,800 to 282,546
_RS15830
HMPREF1078_RS15835: HMPREF1078_RS15835 - pseudouridine synthase, at 282,640 to 283,317
_RS15835
HMPREF1078_RS15840: HMPREF1078_RS15840 - DMT family transporter, at 283,369 to 284,298
_RS15840
Position (kb) 282
283
284 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.683 kb on + strand, within HMPREF1078_RS15825 at 281.749 kb on + strand at 281.754 kb on + strand at 281.754 kb on + strand at 282.545 kb on - strand at 282.554 kb on + strand at 282.555 kb on - strand at 282.562 kb on - strand at 282.575 kb on + strand at 282.575 kb on + strand at 282.576 kb on - strand at 282.576 kb on - strand at 282.576 kb on - strand at 282.579 kb on + strand at 282.580 kb on - strand at 282.621 kb on - strand at 282.648 kb on + strand at 282.653 kb on - strand at 282.666 kb on + strand at 282.667 kb on - strand at 282.667 kb on - strand at 282.681 kb on + strand at 282.681 kb on + strand at 282.702 kb on - strand at 282.724 kb on - strand, within HMPREF1078_RS15835 at 282.724 kb on - strand, within HMPREF1078_RS15835 at 282.766 kb on + strand, within HMPREF1078_RS15835 at 282.766 kb on + strand, within HMPREF1078_RS15835 at 282.766 kb on + strand, within HMPREF1078_RS15835 at 282.766 kb on + strand, within HMPREF1078_RS15835 at 282.766 kb on + strand, within HMPREF1078_RS15835 at 282.767 kb on - strand, within HMPREF1078_RS15835 at 282.767 kb on - strand, within HMPREF1078_RS15835 at 282.767 kb on - strand, within HMPREF1078_RS15835 at 282.836 kb on + strand, within HMPREF1078_RS15835 at 282.907 kb on + strand, within HMPREF1078_RS15835 at 282.994 kb on + strand, within HMPREF1078_RS15835 at 282.994 kb on + strand, within HMPREF1078_RS15835 at 282.994 kb on + strand, within HMPREF1078_RS15835 at 282.994 kb on + strand, within HMPREF1078_RS15835 at 282.995 kb on - strand, within HMPREF1078_RS15835 at 282.995 kb on - strand, within HMPREF1078_RS15835 at 282.995 kb on - strand, within HMPREF1078_RS15835 at 283.000 kb on + strand, within HMPREF1078_RS15835 at 283.001 kb on - strand, within HMPREF1078_RS15835 at 283.069 kb on + strand, within HMPREF1078_RS15835 at 283.069 kb on + strand, within HMPREF1078_RS15835 at 283.069 kb on + strand, within HMPREF1078_RS15835 at 283.070 kb on - strand, within HMPREF1078_RS15835 at 283.070 kb on - strand, within HMPREF1078_RS15835 at 283.070 kb on - strand, within HMPREF1078_RS15835 at 283.072 kb on + strand, within HMPREF1078_RS15835 at 283.085 kb on + strand, within HMPREF1078_RS15835 at 283.085 kb on + strand, within HMPREF1078_RS15835 at 283.086 kb on - strand, within HMPREF1078_RS15835 at 283.166 kb on - strand, within HMPREF1078_RS15835 at 283.226 kb on + strand, within HMPREF1078_RS15835 at 283.441 kb on + strand at 283.444 kb on + strand at 283.529 kb on + strand, within HMPREF1078_RS15840 at 283.529 kb on + strand, within HMPREF1078_RS15840 at 283.529 kb on + strand, within HMPREF1078_RS15840 at 283.529 kb on + strand, within HMPREF1078_RS15840 at 283.529 kb on + strand, within HMPREF1078_RS15840 at 283.529 kb on + strand, within HMPREF1078_RS15840 at 283.530 kb on - strand, within HMPREF1078_RS15840 at 283.535 kb on + strand, within HMPREF1078_RS15840 at 283.535 kb on + strand, within HMPREF1078_RS15840 at 283.536 kb on - strand, within HMPREF1078_RS15840 at 283.536 kb on - strand, within HMPREF1078_RS15840 at 283.559 kb on - strand, within HMPREF1078_RS15840 at 283.630 kb on + strand, within HMPREF1078_RS15840 at 283.630 kb on + strand, within HMPREF1078_RS15840 at 283.634 kb on + strand, within HMPREF1078_RS15840 at 283.638 kb on + strand, within HMPREF1078_RS15840 at 283.638 kb on + strand, within HMPREF1078_RS15840 at 283.682 kb on + strand, within HMPREF1078_RS15840 at 283.683 kb on - strand, within HMPREF1078_RS15840 at 283.698 kb on + strand, within HMPREF1078_RS15840 at 283.698 kb on + strand, within HMPREF1078_RS15840 at 283.699 kb on - strand, within HMPREF1078_RS15840 at 283.770 kb on - strand, within HMPREF1078_RS15840 at 283.770 kb on - strand, within HMPREF1078_RS15840 at 283.778 kb on - strand, within HMPREF1078_RS15840 at 283.781 kb on + strand, within HMPREF1078_RS15840 at 283.782 kb on - strand, within HMPREF1078_RS15840 at 283.782 kb on - strand, within HMPREF1078_RS15840 at 283.818 kb on + strand, within HMPREF1078_RS15840 at 283.819 kb on - strand, within HMPREF1078_RS15840 at 283.819 kb on - strand, within HMPREF1078_RS15840 at 283.852 kb on + strand, within HMPREF1078_RS15840 at 284.008 kb on + strand, within HMPREF1078_RS15840 at 284.008 kb on + strand, within HMPREF1078_RS15840 at 284.037 kb on + strand, within HMPREF1078_RS15840 at 284.038 kb on - strand, within HMPREF1078_RS15840 at 284.038 kb on - strand, within HMPREF1078_RS15840 at 284.039 kb on + strand, within HMPREF1078_RS15840 at 284.039 kb on + strand, within HMPREF1078_RS15840 at 284.040 kb on - strand, within HMPREF1078_RS15840 at 284.044 kb on - strand, within HMPREF1078_RS15840 at 284.044 kb on - strand, within HMPREF1078_RS15840 at 284.056 kb on + strand, within HMPREF1078_RS15840 at 284.179 kb on + strand, within HMPREF1078_RS15840 at 284.198 kb on - strand, within HMPREF1078_RS15840 at 284.209 kb on + strand at 284.248 kb on + strand at 284.248 kb on + strand at 284.249 kb on - strand at 284.249 kb on - strand at 284.249 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C) remove 281,681 + HMPREF1078_RS15825 0.89 +1.3 281,681 + HMPREF1078_RS15825 0.89 -0.0 281,681 + HMPREF1078_RS15825 0.89 -0.9 281,681 + HMPREF1078_RS15825 0.89 -1.5 281,681 + HMPREF1078_RS15825 0.89 -1.6 281,681 + HMPREF1078_RS15825 0.89 +0.6 281,681 + HMPREF1078_RS15825 0.89 +0.1 281,681 + HMPREF1078_RS15825 0.89 -0.8 281,681 + HMPREF1078_RS15825 0.89 -0.5 281,683 + HMPREF1078_RS15825 0.90 -1.7 281,749 + +1.2 281,754 + -0.7 281,754 + -1.0 282,545 - -1.9 282,554 + -0.3 282,555 - -1.3 282,562 - -0.7 282,575 + +0.0 282,575 + +0.5 282,576 - +0.2 282,576 - -1.7 282,576 - -0.0 282,579 + +0.5 282,580 - +0.4 282,621 - -1.0 282,648 + +0.5 282,653 - +0.9 282,666 + +0.9 282,667 - -0.3 282,667 - +0.6 282,681 + -2.2 282,681 + -0.2 282,702 - -0.9 282,724 - HMPREF1078_RS15835 0.12 -3.3 282,724 - HMPREF1078_RS15835 0.12 -2.0 282,766 + HMPREF1078_RS15835 0.19 -1.3 282,766 + HMPREF1078_RS15835 0.19 -0.5 282,766 + HMPREF1078_RS15835 0.19 -0.3 282,766 + HMPREF1078_RS15835 0.19 -2.1 282,766 + HMPREF1078_RS15835 0.19 -0.8 282,767 - HMPREF1078_RS15835 0.19 -1.8 282,767 - HMPREF1078_RS15835 0.19 -0.1 282,767 - HMPREF1078_RS15835 0.19 -1.8 282,836 + HMPREF1078_RS15835 0.29 -1.8 282,907 + HMPREF1078_RS15835 0.39 +0.0 282,994 + HMPREF1078_RS15835 0.52 +0.1 282,994 + HMPREF1078_RS15835 0.52 -0.5 282,994 + HMPREF1078_RS15835 0.52 -2.7 282,994 + HMPREF1078_RS15835 0.52 +1.0 282,995 - HMPREF1078_RS15835 0.52 -1.1 282,995 - HMPREF1078_RS15835 0.52 -2.9 282,995 - HMPREF1078_RS15835 0.52 -0.1 283,000 + HMPREF1078_RS15835 0.53 -0.4 283,001 - HMPREF1078_RS15835 0.53 +0.0 283,069 + HMPREF1078_RS15835 0.63 +1.4 283,069 + HMPREF1078_RS15835 0.63 -0.1 283,069 + HMPREF1078_RS15835 0.63 -0.7 283,070 - HMPREF1078_RS15835 0.63 +0.1 283,070 - HMPREF1078_RS15835 0.63 +1.3 283,070 - HMPREF1078_RS15835 0.63 +0.7 283,072 + HMPREF1078_RS15835 0.64 -0.5 283,085 + HMPREF1078_RS15835 0.66 -0.5 283,085 + HMPREF1078_RS15835 0.66 -0.8 283,086 - HMPREF1078_RS15835 0.66 -3.5 283,166 - HMPREF1078_RS15835 0.78 -0.3 283,226 + HMPREF1078_RS15835 0.86 +0.6 283,441 + -0.3 283,444 + -0.3 283,529 + HMPREF1078_RS15840 0.17 -0.0 283,529 + HMPREF1078_RS15840 0.17 -1.1 283,529 + HMPREF1078_RS15840 0.17 +0.5 283,529 + HMPREF1078_RS15840 0.17 -0.9 283,529 + HMPREF1078_RS15840 0.17 +0.9 283,529 + HMPREF1078_RS15840 0.17 -2.7 283,530 - HMPREF1078_RS15840 0.17 +0.4 283,535 + HMPREF1078_RS15840 0.18 -0.0 283,535 + HMPREF1078_RS15840 0.18 +0.3 283,536 - HMPREF1078_RS15840 0.18 +1.2 283,536 - HMPREF1078_RS15840 0.18 +0.6 283,559 - HMPREF1078_RS15840 0.20 -0.8 283,630 + HMPREF1078_RS15840 0.28 -0.2 283,630 + HMPREF1078_RS15840 0.28 +1.0 283,634 + HMPREF1078_RS15840 0.28 +0.1 283,638 + HMPREF1078_RS15840 0.29 +0.7 283,638 + HMPREF1078_RS15840 0.29 +1.0 283,682 + HMPREF1078_RS15840 0.34 +0.5 283,683 - HMPREF1078_RS15840 0.34 +2.8 283,698 + HMPREF1078_RS15840 0.35 -0.3 283,698 + HMPREF1078_RS15840 0.35 -0.1 283,699 - HMPREF1078_RS15840 0.35 -0.4 283,770 - HMPREF1078_RS15840 0.43 -1.6 283,770 - HMPREF1078_RS15840 0.43 -0.6 283,778 - HMPREF1078_RS15840 0.44 -0.7 283,781 + HMPREF1078_RS15840 0.44 -0.4 283,782 - HMPREF1078_RS15840 0.44 -0.4 283,782 - HMPREF1078_RS15840 0.44 +0.4 283,818 + HMPREF1078_RS15840 0.48 -1.2 283,819 - HMPREF1078_RS15840 0.48 -0.9 283,819 - HMPREF1078_RS15840 0.48 +1.6 283,852 + HMPREF1078_RS15840 0.52 +1.2 284,008 + HMPREF1078_RS15840 0.69 -1.7 284,008 + HMPREF1078_RS15840 0.69 +0.5 284,037 + HMPREF1078_RS15840 0.72 -0.8 284,038 - HMPREF1078_RS15840 0.72 +0.2 284,038 - HMPREF1078_RS15840 0.72 -0.1 284,039 + HMPREF1078_RS15840 0.72 -1.2 284,039 + HMPREF1078_RS15840 0.72 +0.2 284,040 - HMPREF1078_RS15840 0.72 -3.3 284,044 - HMPREF1078_RS15840 0.73 +1.0 284,044 - HMPREF1078_RS15840 0.73 +1.0 284,056 + HMPREF1078_RS15840 0.74 -0.9 284,179 + HMPREF1078_RS15840 0.87 -2.5 284,198 - HMPREF1078_RS15840 0.89 -0.4 284,209 + -0.4 284,248 + +1.3 284,248 + +0.3 284,249 - +0.0 284,249 - +0.3 284,249 - +0.2
Or see this region's nucleotide sequence