Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14030 and HMPREF1078_RS14035 are separated by 228 nucleotides HMPREF1078_RS14035 and HMPREF1078_RS14040 are separated by 0 nucleotides HMPREF1078_RS14040 and HMPREF1078_RS14045 are separated by 71 nucleotides
HMPREF1078_RS14030: HMPREF1078_RS14030 - TonB-dependent receptor, at 266,061 to 268,358
_RS14030
HMPREF1078_RS14035: HMPREF1078_RS14035 - hypothetical protein, at 268,587 to 268,916
_RS14035
HMPREF1078_RS14040: HMPREF1078_RS14040 - septum formation initiator family protein, at 268,917 to 269,222
_RS14040
HMPREF1078_RS14045: HMPREF1078_RS14045 - DNA polymerase III subunit gamma/tau, at 269,294 to 271,114
_RS14045
Position (kb) 268
269 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 267.595 kb on + strand, within HMPREF1078_RS14030 at 267.595 kb on + strand, within HMPREF1078_RS14030 at 267.595 kb on + strand, within HMPREF1078_RS14030 at 267.596 kb on - strand, within HMPREF1078_RS14030 at 267.676 kb on + strand, within HMPREF1078_RS14030 at 267.690 kb on - strand, within HMPREF1078_RS14030 at 267.703 kb on + strand, within HMPREF1078_RS14030 at 267.709 kb on + strand, within HMPREF1078_RS14030 at 267.897 kb on - strand, within HMPREF1078_RS14030 at 267.936 kb on - strand, within HMPREF1078_RS14030 at 268.142 kb on + strand at 268.213 kb on - strand at 268.253 kb on - strand at 268.253 kb on - strand at 268.283 kb on - strand at 268.289 kb on + strand at 268.387 kb on - strand at 268.401 kb on + strand at 268.402 kb on - strand at 268.443 kb on - strand at 268.443 kb on - strand at 268.457 kb on - strand at 268.457 kb on - strand at 268.487 kb on + strand at 268.492 kb on - strand at 268.526 kb on + strand at 268.526 kb on + strand at 268.537 kb on + strand at 268.537 kb on + strand at 268.543 kb on + strand at 268.555 kb on + strand at 268.555 kb on + strand at 268.555 kb on + strand at 268.555 kb on + strand at 268.555 kb on + strand at 268.555 kb on + strand at 268.556 kb on - strand at 268.556 kb on - strand at 268.556 kb on - strand at 268.556 kb on - strand at 268.561 kb on + strand at 268.566 kb on - strand at 268.566 kb on - strand at 268.567 kb on + strand at 268.567 kb on + strand at 268.567 kb on + strand at 268.567 kb on + strand at 268.567 kb on + strand at 268.568 kb on - strand at 268.568 kb on - strand at 268.568 kb on - strand at 268.568 kb on - strand at 268.568 kb on - strand at 268.571 kb on + strand at 268.571 kb on + strand at 268.572 kb on - strand at 268.572 kb on - strand at 268.572 kb on - strand at 268.576 kb on - strand at 268.589 kb on - strand at 268.621 kb on + strand, within HMPREF1078_RS14035 at 268.622 kb on - strand, within HMPREF1078_RS14035 at 268.622 kb on - strand, within HMPREF1078_RS14035 at 268.622 kb on - strand, within HMPREF1078_RS14035 at 268.623 kb on + strand, within HMPREF1078_RS14035 at 268.624 kb on - strand, within HMPREF1078_RS14035 at 268.700 kb on + strand, within HMPREF1078_RS14035 at 268.701 kb on - strand, within HMPREF1078_RS14035 at 268.719 kb on + strand, within HMPREF1078_RS14035 at 268.720 kb on - strand, within HMPREF1078_RS14035 at 268.720 kb on - strand, within HMPREF1078_RS14035 at 268.720 kb on - strand, within HMPREF1078_RS14035 at 268.727 kb on - strand, within HMPREF1078_RS14035 at 268.758 kb on - strand, within HMPREF1078_RS14035 at 268.819 kb on + strand, within HMPREF1078_RS14035 at 268.820 kb on - strand, within HMPREF1078_RS14035 at 268.846 kb on + strand, within HMPREF1078_RS14035 at 268.847 kb on - strand, within HMPREF1078_RS14035 at 268.931 kb on + strand at 268.931 kb on + strand at 268.931 kb on + strand at 268.932 kb on - strand at 268.932 kb on - strand at 268.932 kb on - strand at 268.932 kb on - strand at 268.932 kb on - strand at 268.935 kb on - strand at 268.935 kb on - strand at 268.935 kb on - strand at 269.246 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C) remove 267,595 + HMPREF1078_RS14030 0.67 +0.1 267,595 + HMPREF1078_RS14030 0.67 +0.9 267,595 + HMPREF1078_RS14030 0.67 -0.4 267,596 - HMPREF1078_RS14030 0.67 -1.7 267,676 + HMPREF1078_RS14030 0.70 -0.7 267,690 - HMPREF1078_RS14030 0.71 +0.6 267,703 + HMPREF1078_RS14030 0.71 -0.2 267,709 + HMPREF1078_RS14030 0.72 -0.7 267,897 - HMPREF1078_RS14030 0.80 -0.2 267,936 - HMPREF1078_RS14030 0.82 -0.3 268,142 + +0.5 268,213 - -0.4 268,253 - +0.8 268,253 - -2.5 268,283 - -0.9 268,289 + -0.2 268,387 - +0.4 268,401 + -1.4 268,402 - +0.5 268,443 - -1.3 268,443 - +0.3 268,457 - -2.2 268,457 - +1.2 268,487 + -1.0 268,492 - +0.1 268,526 + +0.6 268,526 + -0.1 268,537 + +0.3 268,537 + +0.9 268,543 + +1.2 268,555 + -1.7 268,555 + +0.3 268,555 + +1.7 268,555 + -1.1 268,555 + +1.7 268,555 + +0.6 268,556 - +0.2 268,556 - -1.9 268,556 - -1.0 268,556 - +0.3 268,561 + -1.0 268,566 - -1.1 268,566 - +0.4 268,567 + -0.1 268,567 + +0.3 268,567 + -2.2 268,567 + +0.3 268,567 + -1.2 268,568 - -0.6 268,568 - +0.7 268,568 - -0.0 268,568 - -0.8 268,568 - +1.0 268,571 + -1.2 268,571 + -2.0 268,572 - -0.4 268,572 - -3.8 268,572 - -0.3 268,576 - -0.1 268,589 - -0.7 268,621 + HMPREF1078_RS14035 0.10 +1.0 268,622 - HMPREF1078_RS14035 0.11 +3.3 268,622 - HMPREF1078_RS14035 0.11 -1.1 268,622 - HMPREF1078_RS14035 0.11 -0.0 268,623 + HMPREF1078_RS14035 0.11 -1.0 268,624 - HMPREF1078_RS14035 0.11 +1.4 268,700 + HMPREF1078_RS14035 0.34 +1.8 268,701 - HMPREF1078_RS14035 0.35 -0.6 268,719 + HMPREF1078_RS14035 0.40 -2.8 268,720 - HMPREF1078_RS14035 0.40 +0.3 268,720 - HMPREF1078_RS14035 0.40 +0.4 268,720 - HMPREF1078_RS14035 0.40 +1.4 268,727 - HMPREF1078_RS14035 0.42 -1.8 268,758 - HMPREF1078_RS14035 0.52 -2.1 268,819 + HMPREF1078_RS14035 0.70 +0.1 268,820 - HMPREF1078_RS14035 0.71 +1.5 268,846 + HMPREF1078_RS14035 0.78 -2.9 268,847 - HMPREF1078_RS14035 0.79 +0.2 268,931 + -2.2 268,931 + -1.5 268,931 + +0.3 268,932 - -0.2 268,932 - +0.2 268,932 - -1.2 268,932 - -1.3 268,932 - -0.0 268,935 - -2.1 268,935 - -1.1 268,935 - -1.1 269,246 - +0.0
Or see this region's nucleotide sequence