Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11165 and HMPREF1078_RS11170 are separated by 61 nucleotides HMPREF1078_RS11170 and HMPREF1078_RS11175 are separated by 169 nucleotides HMPREF1078_RS11175 and HMPREF1078_RS11180 are separated by 148 nucleotides HMPREF1078_RS11180 and HMPREF1078_RS11185 are separated by 26 nucleotides HMPREF1078_RS11185 and HMPREF1078_RS11190 are separated by 182 nucleotides
HMPREF1078_RS11165: HMPREF1078_RS11165 - pseudouridine synthase, at 154,772 to 156,229
_RS11165
HMPREF1078_RS11170: HMPREF1078_RS11170 - adenylosuccinate lyase, at 156,291 to 157,634
_RS11170
HMPREF1078_RS11175: HMPREF1078_RS11175 - tRNA-Val, at 157,804 to 157,878
_RS11175
HMPREF1078_RS11180: HMPREF1078_RS11180 - tRNA-Val, at 158,027 to 158,101
_RS11180
HMPREF1078_RS11185: HMPREF1078_RS11185 - tRNA-Val, at 158,128 to 158,202
_RS11185
HMPREF1078_RS11190: HMPREF1078_RS11190 - DoxX family protein, at 158,385 to 158,825
_RS11190
Position (kb) 156
157
158 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 156.237 kb on - strand at 156.242 kb on - strand at 156.264 kb on - strand at 156.293 kb on - strand at 156.293 kb on - strand at 156.293 kb on - strand at 157.645 kb on - strand at 157.669 kb on - strand at 158.123 kb on + strand at 158.123 kb on + strand at 158.227 kb on + strand at 158.227 kb on + strand at 158.228 kb on - strand at 158.228 kb on - strand at 158.228 kb on - strand at 158.273 kb on + strand at 158.273 kb on + strand at 158.273 kb on + strand at 158.274 kb on - strand at 158.274 kb on - strand at 158.284 kb on + strand at 158.329 kb on - strand at 158.329 kb on - strand at 158.356 kb on - strand at 158.356 kb on - strand at 158.357 kb on + strand at 158.357 kb on + strand at 158.357 kb on + strand at 158.357 kb on + strand at 158.358 kb on - strand at 158.358 kb on - strand at 158.363 kb on + strand at 158.363 kb on + strand at 158.364 kb on - strand at 158.376 kb on + strand at 158.377 kb on - strand at 158.378 kb on + strand at 158.379 kb on - strand at 158.379 kb on - strand at 158.399 kb on + strand at 158.399 kb on + strand at 158.400 kb on - strand at 158.401 kb on + strand at 158.403 kb on + strand at 158.404 kb on - strand at 158.415 kb on + strand at 158.415 kb on + strand at 158.416 kb on - strand at 158.424 kb on + strand at 158.455 kb on + strand, within HMPREF1078_RS11190 at 158.455 kb on + strand, within HMPREF1078_RS11190 at 158.455 kb on + strand, within HMPREF1078_RS11190 at 158.455 kb on + strand, within HMPREF1078_RS11190 at 158.455 kb on + strand, within HMPREF1078_RS11190 at 158.456 kb on - strand, within HMPREF1078_RS11190 at 158.469 kb on + strand, within HMPREF1078_RS11190 at 158.469 kb on + strand, within HMPREF1078_RS11190 at 158.470 kb on - strand, within HMPREF1078_RS11190 at 158.470 kb on - strand, within HMPREF1078_RS11190 at 158.483 kb on + strand, within HMPREF1078_RS11190 at 158.483 kb on + strand, within HMPREF1078_RS11190 at 158.484 kb on - strand, within HMPREF1078_RS11190 at 158.484 kb on - strand, within HMPREF1078_RS11190 at 158.523 kb on + strand, within HMPREF1078_RS11190 at 158.524 kb on - strand, within HMPREF1078_RS11190 at 158.592 kb on + strand, within HMPREF1078_RS11190 at 158.593 kb on - strand, within HMPREF1078_RS11190 at 158.594 kb on + strand, within HMPREF1078_RS11190 at 158.613 kb on + strand, within HMPREF1078_RS11190 at 158.614 kb on - strand, within HMPREF1078_RS11190 at 158.614 kb on - strand, within HMPREF1078_RS11190 at 158.614 kb on - strand, within HMPREF1078_RS11190
Per-strain Table
Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C) remove 156,237 - -2.8 156,242 - -1.5 156,264 - +2.3 156,293 - -0.3 156,293 - -3.5 156,293 - -0.6 157,645 - +0.4 157,669 - +0.4 158,123 + -0.9 158,123 + -1.5 158,227 + -0.9 158,227 + +0.1 158,228 - +1.2 158,228 - -0.9 158,228 - -1.5 158,273 + +0.9 158,273 + +0.0 158,273 + -0.8 158,274 - -0.6 158,274 - -0.4 158,284 + -2.1 158,329 - -0.7 158,329 - -2.4 158,356 - +0.7 158,356 - -4.0 158,357 + +0.4 158,357 + +0.3 158,357 + -2.8 158,357 + +1.2 158,358 - +0.6 158,358 - -1.9 158,363 + -0.3 158,363 + -2.0 158,364 - +0.6 158,376 + +0.2 158,377 - -0.7 158,378 + +0.6 158,379 - +0.1 158,379 - -1.7 158,399 + +0.7 158,399 + -0.3 158,400 - -3.3 158,401 + -2.4 158,403 + -0.9 158,404 - +0.7 158,415 + -0.3 158,415 + -1.9 158,416 - -0.6 158,424 + -1.5 158,455 + HMPREF1078_RS11190 0.16 -0.4 158,455 + HMPREF1078_RS11190 0.16 +0.5 158,455 + HMPREF1078_RS11190 0.16 -0.9 158,455 + HMPREF1078_RS11190 0.16 -0.4 158,455 + HMPREF1078_RS11190 0.16 -0.1 158,456 - HMPREF1078_RS11190 0.16 -2.3 158,469 + HMPREF1078_RS11190 0.19 -1.4 158,469 + HMPREF1078_RS11190 0.19 +0.5 158,470 - HMPREF1078_RS11190 0.19 -0.4 158,470 - HMPREF1078_RS11190 0.19 -0.2 158,483 + HMPREF1078_RS11190 0.22 -1.9 158,483 + HMPREF1078_RS11190 0.22 -2.4 158,484 - HMPREF1078_RS11190 0.22 -0.1 158,484 - HMPREF1078_RS11190 0.22 -1.3 158,523 + HMPREF1078_RS11190 0.31 -0.6 158,524 - HMPREF1078_RS11190 0.32 +0.4 158,592 + HMPREF1078_RS11190 0.47 +0.8 158,593 - HMPREF1078_RS11190 0.47 +0.6 158,594 + HMPREF1078_RS11190 0.47 -0.3 158,613 + HMPREF1078_RS11190 0.52 -2.0 158,614 - HMPREF1078_RS11190 0.52 +0.7 158,614 - HMPREF1078_RS11190 0.52 -1.6 158,614 - HMPREF1078_RS11190 0.52 -1.0
Or see this region's nucleotide sequence