Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11140 and HMPREF1078_RS11145 overlap by 1 nucleotides HMPREF1078_RS11145 and HMPREF1078_RS11150 are separated by 339 nucleotides HMPREF1078_RS11150 and HMPREF1078_RS11155 are separated by 150 nucleotides HMPREF1078_RS11155 and HMPREF1078_RS11160 are separated by 67 nucleotides
HMPREF1078_RS11140: HMPREF1078_RS11140 - biopolymer transporter ExbD, at 150,649 to 151,236
_RS11140
HMPREF1078_RS11145: HMPREF1078_RS11145 - biopolymer transporter ExbD, at 151,236 to 151,703
_RS11145
HMPREF1078_RS11150: HMPREF1078_RS11150 - GNAT family N-acetyltransferase, at 152,043 to 152,606
_RS11150
HMPREF1078_RS11155: HMPREF1078_RS11155 - Lrp/AsnC ligand binding domain-containing protein, at 152,757 to 153,230
_RS11155
HMPREF1078_RS11160: HMPREF1078_RS11160 - asparagine--tRNA ligase, at 153,298 to 154,704
_RS11160
Position (kb) 152
153 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 151.219 kb on + strand at 151.227 kb on + strand at 151.227 kb on + strand at 151.227 kb on + strand at 151.701 kb on + strand at 151.702 kb on - strand at 151.712 kb on + strand at 151.721 kb on + strand at 151.740 kb on - strand at 151.764 kb on + strand at 151.765 kb on - strand at 151.816 kb on + strand at 151.816 kb on + strand at 151.816 kb on + strand at 151.817 kb on - strand at 151.828 kb on + strand at 151.828 kb on + strand at 151.828 kb on + strand at 151.828 kb on + strand at 151.828 kb on + strand at 151.829 kb on - strand at 151.829 kb on - strand at 151.829 kb on - strand at 151.829 kb on - strand at 151.829 kb on - strand at 151.829 kb on - strand at 151.832 kb on + strand at 151.832 kb on + strand at 151.833 kb on - strand at 151.833 kb on - strand at 151.836 kb on + strand at 151.844 kb on + strand at 151.844 kb on + strand at 151.844 kb on + strand at 151.844 kb on + strand at 151.844 kb on + strand at 151.848 kb on + strand at 151.951 kb on + strand at 152.024 kb on + strand at 152.025 kb on - strand at 152.071 kb on + strand at 152.072 kb on - strand at 152.081 kb on + strand at 152.082 kb on - strand at 152.134 kb on + strand, within HMPREF1078_RS11150 at 152.135 kb on - strand, within HMPREF1078_RS11150 at 152.228 kb on - strand, within HMPREF1078_RS11150 at 152.377 kb on + strand, within HMPREF1078_RS11150 at 152.377 kb on + strand, within HMPREF1078_RS11150 at 152.377 kb on + strand, within HMPREF1078_RS11150 at 152.378 kb on - strand, within HMPREF1078_RS11150 at 152.378 kb on - strand, within HMPREF1078_RS11150 at 152.381 kb on + strand, within HMPREF1078_RS11150 at 152.381 kb on + strand, within HMPREF1078_RS11150 at 152.381 kb on + strand, within HMPREF1078_RS11150 at 152.382 kb on - strand, within HMPREF1078_RS11150 at 152.382 kb on - strand, within HMPREF1078_RS11150 at 152.382 kb on - strand, within HMPREF1078_RS11150 at 152.382 kb on - strand, within HMPREF1078_RS11150 at 152.382 kb on - strand, within HMPREF1078_RS11150 at 152.419 kb on + strand, within HMPREF1078_RS11150 at 152.443 kb on + strand, within HMPREF1078_RS11150 at 152.443 kb on + strand, within HMPREF1078_RS11150 at 152.527 kb on + strand, within HMPREF1078_RS11150 at 152.527 kb on + strand, within HMPREF1078_RS11150 at 152.528 kb on - strand, within HMPREF1078_RS11150 at 152.528 kb on - strand, within HMPREF1078_RS11150 at 152.528 kb on - strand, within HMPREF1078_RS11150 at 152.528 kb on - strand, within HMPREF1078_RS11150 at 152.528 kb on - strand, within HMPREF1078_RS11150 at 152.579 kb on + strand at 152.579 kb on + strand at 152.579 kb on + strand at 152.586 kb on + strand at 152.586 kb on + strand at 152.586 kb on + strand at 152.586 kb on + strand at 152.587 kb on - strand at 152.587 kb on - strand at 152.587 kb on - strand at 152.587 kb on - strand at 152.607 kb on - strand at 152.607 kb on - strand at 152.627 kb on + strand at 152.627 kb on + strand at 152.630 kb on + strand at 152.646 kb on + strand at 152.706 kb on + strand at 152.710 kb on - strand at 152.737 kb on + strand at 152.738 kb on - strand at 152.739 kb on + strand at 152.739 kb on + strand at 152.740 kb on - strand at 152.740 kb on - strand at 152.740 kb on - strand at 152.746 kb on - strand at 152.747 kb on + strand at 152.747 kb on + strand at 152.748 kb on - strand at 152.751 kb on + strand at 152.751 kb on + strand at 152.751 kb on + strand at 152.797 kb on + strand at 152.798 kb on - strand at 152.803 kb on + strand at 152.809 kb on + strand, within HMPREF1078_RS11155 at 152.810 kb on - strand, within HMPREF1078_RS11155 at 152.810 kb on - strand, within HMPREF1078_RS11155 at 152.822 kb on + strand, within HMPREF1078_RS11155 at 152.852 kb on + strand, within HMPREF1078_RS11155 at 152.852 kb on + strand, within HMPREF1078_RS11155 at 152.852 kb on + strand, within HMPREF1078_RS11155 at 152.852 kb on + strand, within HMPREF1078_RS11155 at 152.852 kb on + strand, within HMPREF1078_RS11155 at 152.852 kb on + strand, within HMPREF1078_RS11155 at 152.853 kb on - strand, within HMPREF1078_RS11155 at 152.853 kb on - strand, within HMPREF1078_RS11155 at 152.853 kb on - strand, within HMPREF1078_RS11155 at 152.853 kb on - strand, within HMPREF1078_RS11155 at 152.857 kb on + strand, within HMPREF1078_RS11155 at 152.872 kb on + strand, within HMPREF1078_RS11155 at 152.872 kb on + strand, within HMPREF1078_RS11155 at 152.873 kb on - strand, within HMPREF1078_RS11155 at 152.873 kb on - strand, within HMPREF1078_RS11155 at 152.883 kb on - strand, within HMPREF1078_RS11155 at 152.883 kb on - strand, within HMPREF1078_RS11155 at 152.883 kb on - strand, within HMPREF1078_RS11155 at 152.883 kb on - strand, within HMPREF1078_RS11155 at 152.947 kb on + strand, within HMPREF1078_RS11155 at 152.948 kb on - strand, within HMPREF1078_RS11155 at 152.948 kb on - strand, within HMPREF1078_RS11155 at 152.952 kb on + strand, within HMPREF1078_RS11155 at 152.967 kb on + strand, within HMPREF1078_RS11155 at 152.967 kb on + strand, within HMPREF1078_RS11155 at 152.967 kb on + strand, within HMPREF1078_RS11155 at 152.967 kb on + strand, within HMPREF1078_RS11155 at 152.967 kb on + strand, within HMPREF1078_RS11155 at 152.967 kb on + strand, within HMPREF1078_RS11155 at 152.967 kb on + strand, within HMPREF1078_RS11155 at 152.967 kb on + strand, within HMPREF1078_RS11155 at 152.967 kb on + strand, within HMPREF1078_RS11155 at 152.967 kb on + strand, within HMPREF1078_RS11155 at 152.968 kb on - strand, within HMPREF1078_RS11155 at 152.968 kb on - strand, within HMPREF1078_RS11155 at 152.968 kb on - strand, within HMPREF1078_RS11155 at 152.968 kb on - strand, within HMPREF1078_RS11155 at 152.968 kb on - strand, within HMPREF1078_RS11155 at 152.968 kb on - strand, within HMPREF1078_RS11155 at 152.968 kb on - strand, within HMPREF1078_RS11155 at 152.968 kb on - strand, within HMPREF1078_RS11155 at 152.968 kb on - strand, within HMPREF1078_RS11155 at 152.968 kb on - strand, within HMPREF1078_RS11155 at 152.968 kb on - strand, within HMPREF1078_RS11155 at 152.968 kb on - strand, within HMPREF1078_RS11155 at 152.968 kb on - strand, within HMPREF1078_RS11155 at 152.979 kb on + strand, within HMPREF1078_RS11155 at 152.979 kb on + strand, within HMPREF1078_RS11155 at 152.980 kb on - strand, within HMPREF1078_RS11155 at 152.980 kb on - strand, within HMPREF1078_RS11155 at 153.054 kb on + strand, within HMPREF1078_RS11155 at 153.069 kb on + strand, within HMPREF1078_RS11155 at 153.069 kb on + strand, within HMPREF1078_RS11155 at 153.070 kb on - strand, within HMPREF1078_RS11155 at 153.070 kb on - strand, within HMPREF1078_RS11155 at 153.070 kb on - strand, within HMPREF1078_RS11155 at 153.076 kb on + strand, within HMPREF1078_RS11155 at 153.077 kb on - strand, within HMPREF1078_RS11155 at 153.077 kb on - strand, within HMPREF1078_RS11155 at 153.088 kb on + strand, within HMPREF1078_RS11155 at 153.089 kb on - strand, within HMPREF1078_RS11155 at 153.089 kb on - strand, within HMPREF1078_RS11155 at 153.090 kb on + strand, within HMPREF1078_RS11155 at 153.090 kb on + strand, within HMPREF1078_RS11155 at 153.090 kb on + strand, within HMPREF1078_RS11155 at 153.090 kb on + strand, within HMPREF1078_RS11155 at 153.091 kb on - strand, within HMPREF1078_RS11155 at 153.091 kb on - strand, within HMPREF1078_RS11155 at 153.123 kb on - strand, within HMPREF1078_RS11155 at 153.131 kb on + strand, within HMPREF1078_RS11155 at 153.131 kb on + strand, within HMPREF1078_RS11155 at 153.131 kb on + strand, within HMPREF1078_RS11155 at 153.131 kb on + strand, within HMPREF1078_RS11155 at 153.131 kb on + strand, within HMPREF1078_RS11155 at 153.132 kb on - strand, within HMPREF1078_RS11155 at 153.132 kb on - strand, within HMPREF1078_RS11155 at 153.132 kb on - strand, within HMPREF1078_RS11155 at 153.229 kb on - strand at 153.232 kb on + strand at 153.247 kb on - strand at 153.247 kb on - strand at 153.247 kb on - strand at 153.247 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C) remove 151,219 + -0.4 151,227 + -1.1 151,227 + -3.4 151,227 + -0.9 151,701 + -5.0 151,702 - -1.1 151,712 + -1.6 151,721 + -2.0 151,740 - -0.2 151,764 + +1.0 151,765 - -1.8 151,816 + -1.6 151,816 + +0.7 151,816 + -2.2 151,817 - -1.7 151,828 + +3.6 151,828 + -2.8 151,828 + -1.2 151,828 + -0.1 151,828 + +0.4 151,829 - +0.3 151,829 - +3.2 151,829 - -0.1 151,829 - +0.2 151,829 - +0.1 151,829 - +0.1 151,832 + -1.1 151,832 + -2.8 151,833 - -1.4 151,833 - +0.5 151,836 + +0.4 151,844 + -1.5 151,844 + +0.2 151,844 + -0.1 151,844 + -0.7 151,844 + +0.3 151,848 + -2.9 151,951 + -2.2 152,024 + -0.6 152,025 - -2.3 152,071 + -1.5 152,072 - +0.3 152,081 + +0.0 152,082 - +0.3 152,134 + HMPREF1078_RS11150 0.16 -2.2 152,135 - HMPREF1078_RS11150 0.16 -1.3 152,228 - HMPREF1078_RS11150 0.33 -0.1 152,377 + HMPREF1078_RS11150 0.59 +0.6 152,377 + HMPREF1078_RS11150 0.59 -0.0 152,377 + HMPREF1078_RS11150 0.59 +0.0 152,378 - HMPREF1078_RS11150 0.59 +1.8 152,378 - HMPREF1078_RS11150 0.59 -0.4 152,381 + HMPREF1078_RS11150 0.60 -1.6 152,381 + HMPREF1078_RS11150 0.60 -0.9 152,381 + HMPREF1078_RS11150 0.60 -0.4 152,382 - HMPREF1078_RS11150 0.60 -2.1 152,382 - HMPREF1078_RS11150 0.60 -0.2 152,382 - HMPREF1078_RS11150 0.60 -0.6 152,382 - HMPREF1078_RS11150 0.60 -0.4 152,382 - HMPREF1078_RS11150 0.60 -1.9 152,419 + HMPREF1078_RS11150 0.67 -0.1 152,443 + HMPREF1078_RS11150 0.71 +0.4 152,443 + HMPREF1078_RS11150 0.71 +0.4 152,527 + HMPREF1078_RS11150 0.86 -0.1 152,527 + HMPREF1078_RS11150 0.86 +1.3 152,528 - HMPREF1078_RS11150 0.86 -0.1 152,528 - HMPREF1078_RS11150 0.86 +0.6 152,528 - HMPREF1078_RS11150 0.86 -0.5 152,528 - HMPREF1078_RS11150 0.86 +1.7 152,528 - HMPREF1078_RS11150 0.86 +0.1 152,579 + +0.5 152,579 + +0.4 152,579 + -1.5 152,586 + -0.7 152,586 + +0.4 152,586 + -0.1 152,586 + -0.6 152,587 - +0.1 152,587 - +0.0 152,587 - +1.1 152,587 - -1.9 152,607 - -0.4 152,607 - +0.4 152,627 + +0.6 152,627 + -0.1 152,630 + +1.1 152,646 + -1.0 152,706 + -1.4 152,710 - +1.7 152,737 + +0.8 152,738 - -0.1 152,739 + -0.5 152,739 + -0.7 152,740 - +0.3 152,740 - +2.1 152,740 - +0.6 152,746 - -1.6 152,747 + +0.4 152,747 + +0.0 152,748 - +0.1 152,751 + +1.8 152,751 + +1.1 152,751 + +1.1 152,797 + +0.6 152,798 - -1.3 152,803 + +0.6 152,809 + HMPREF1078_RS11155 0.11 +0.7 152,810 - HMPREF1078_RS11155 0.11 +0.9 152,810 - HMPREF1078_RS11155 0.11 -1.3 152,822 + HMPREF1078_RS11155 0.14 -1.8 152,852 + HMPREF1078_RS11155 0.20 +0.5 152,852 + HMPREF1078_RS11155 0.20 -1.0 152,852 + HMPREF1078_RS11155 0.20 +0.8 152,852 + HMPREF1078_RS11155 0.20 +0.6 152,852 + HMPREF1078_RS11155 0.20 -0.7 152,852 + HMPREF1078_RS11155 0.20 +0.5 152,853 - HMPREF1078_RS11155 0.20 +0.8 152,853 - HMPREF1078_RS11155 0.20 +1.4 152,853 - HMPREF1078_RS11155 0.20 +0.2 152,853 - HMPREF1078_RS11155 0.20 -1.8 152,857 + HMPREF1078_RS11155 0.21 -1.1 152,872 + HMPREF1078_RS11155 0.24 -0.7 152,872 + HMPREF1078_RS11155 0.24 +0.6 152,873 - HMPREF1078_RS11155 0.24 -2.4 152,873 - HMPREF1078_RS11155 0.24 -0.3 152,883 - HMPREF1078_RS11155 0.27 +1.4 152,883 - HMPREF1078_RS11155 0.27 +0.9 152,883 - HMPREF1078_RS11155 0.27 -0.8 152,883 - HMPREF1078_RS11155 0.27 +0.8 152,947 + HMPREF1078_RS11155 0.40 +1.0 152,948 - HMPREF1078_RS11155 0.40 -0.6 152,948 - HMPREF1078_RS11155 0.40 -2.2 152,952 + HMPREF1078_RS11155 0.41 +0.9 152,967 + HMPREF1078_RS11155 0.44 -0.4 152,967 + HMPREF1078_RS11155 0.44 +1.0 152,967 + HMPREF1078_RS11155 0.44 +0.5 152,967 + HMPREF1078_RS11155 0.44 +0.8 152,967 + HMPREF1078_RS11155 0.44 +0.4 152,967 + HMPREF1078_RS11155 0.44 +0.4 152,967 + HMPREF1078_RS11155 0.44 +2.1 152,967 + HMPREF1078_RS11155 0.44 +0.8 152,967 + HMPREF1078_RS11155 0.44 +0.0 152,967 + HMPREF1078_RS11155 0.44 -0.0 152,968 - HMPREF1078_RS11155 0.45 +0.2 152,968 - HMPREF1078_RS11155 0.45 -2.9 152,968 - HMPREF1078_RS11155 0.45 +1.2 152,968 - HMPREF1078_RS11155 0.45 +0.9 152,968 - HMPREF1078_RS11155 0.45 +0.1 152,968 - HMPREF1078_RS11155 0.45 +1.7 152,968 - HMPREF1078_RS11155 0.45 +1.7 152,968 - HMPREF1078_RS11155 0.45 +0.4 152,968 - HMPREF1078_RS11155 0.45 -0.9 152,968 - HMPREF1078_RS11155 0.45 +0.6 152,968 - HMPREF1078_RS11155 0.45 -2.7 152,968 - HMPREF1078_RS11155 0.45 +0.1 152,968 - HMPREF1078_RS11155 0.45 +0.8 152,979 + HMPREF1078_RS11155 0.47 +1.5 152,979 + HMPREF1078_RS11155 0.47 +0.1 152,980 - HMPREF1078_RS11155 0.47 +0.6 152,980 - HMPREF1078_RS11155 0.47 +1.6 153,054 + HMPREF1078_RS11155 0.63 -0.1 153,069 + HMPREF1078_RS11155 0.66 +1.3 153,069 + HMPREF1078_RS11155 0.66 -1.5 153,070 - HMPREF1078_RS11155 0.66 +1.0 153,070 - HMPREF1078_RS11155 0.66 +0.6 153,070 - HMPREF1078_RS11155 0.66 +0.8 153,076 + HMPREF1078_RS11155 0.67 +0.3 153,077 - HMPREF1078_RS11155 0.68 -1.5 153,077 - HMPREF1078_RS11155 0.68 -0.4 153,088 + HMPREF1078_RS11155 0.70 +1.2 153,089 - HMPREF1078_RS11155 0.70 -1.4 153,089 - HMPREF1078_RS11155 0.70 -1.1 153,090 + HMPREF1078_RS11155 0.70 -0.1 153,090 + HMPREF1078_RS11155 0.70 +0.2 153,090 + HMPREF1078_RS11155 0.70 +0.6 153,090 + HMPREF1078_RS11155 0.70 +1.8 153,091 - HMPREF1078_RS11155 0.70 -0.0 153,091 - HMPREF1078_RS11155 0.70 -1.5 153,123 - HMPREF1078_RS11155 0.77 +0.9 153,131 + HMPREF1078_RS11155 0.79 +1.2 153,131 + HMPREF1078_RS11155 0.79 -2.0 153,131 + HMPREF1078_RS11155 0.79 +0.5 153,131 + HMPREF1078_RS11155 0.79 +0.8 153,131 + HMPREF1078_RS11155 0.79 +0.7 153,132 - HMPREF1078_RS11155 0.79 -0.1 153,132 - HMPREF1078_RS11155 0.79 +1.9 153,132 - HMPREF1078_RS11155 0.79 -2.9 153,229 - -0.1 153,232 + -1.1 153,247 - +0.2 153,247 - +1.0 153,247 - -0.8 153,247 - -0.4
Or see this region's nucleotide sequence