Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS09850

Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS09840 and HMPREF1078_RS09850 are separated by 543 nucleotidesHMPREF1078_RS09850 and HMPREF1078_RS09855 are separated by 86 nucleotidesHMPREF1078_RS09855 and HMPREF1078_RS09860 overlap by 8 nucleotides HMPREF1078_RS09840: HMPREF1078_RS09840 - phenylalanine--tRNA ligase subunit beta, at 565,628 to 568,093 _RS09840 HMPREF1078_RS09850: HMPREF1078_RS09850 - IS66 family transposase, at 568,637 to 570,208 _RS09850 HMPREF1078_RS09855: HMPREF1078_RS09855 - IS66 family insertion sequence element accessory protein TnpB, at 570,295 to 570,642 _RS09855 HMPREF1078_RS09860: HMPREF1078_RS09860 - hypothetical protein, at 570,635 to 571,057 _RS09860 Position (kb) 568 569 570 571Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 568.166 kb on - strandat 568.177 kb on + strandat 568.192 kb on + strandat 568.231 kb on + strandat 568.247 kb on + strandat 568.248 kb on - strandat 568.248 kb on - strandat 568.248 kb on - strandat 568.269 kb on - strandat 568.280 kb on - strandat 568.285 kb on + strandat 568.285 kb on + strandat 568.286 kb on - strandat 568.287 kb on + strandat 568.287 kb on + strandat 568.288 kb on - strandat 568.332 kb on - strandat 568.529 kb on + strandat 568.612 kb on + strandat 568.613 kb on - strandat 568.613 kb on - strandat 568.616 kb on + strandat 568.616 kb on + strandat 568.616 kb on + strandat 568.617 kb on - strandat 568.621 kb on - strandat 568.661 kb on + strandat 568.672 kb on + strandat 568.780 kb on - strandat 568.841 kb on + strand, within HMPREF1078_RS09850at 568.847 kb on - strand, within HMPREF1078_RS09850at 568.850 kb on - strand, within HMPREF1078_RS09850at 568.891 kb on - strand, within HMPREF1078_RS09850at 568.891 kb on - strand, within HMPREF1078_RS09850at 568.891 kb on - strand, within HMPREF1078_RS09850at 568.909 kb on - strand, within HMPREF1078_RS09850at 568.939 kb on + strand, within HMPREF1078_RS09850at 568.939 kb on + strand, within HMPREF1078_RS09850at 568.940 kb on - strand, within HMPREF1078_RS09850at 568.941 kb on + strand, within HMPREF1078_RS09850at 568.941 kb on + strand, within HMPREF1078_RS09850at 568.959 kb on - strand, within HMPREF1078_RS09850at 568.973 kb on + strand, within HMPREF1078_RS09850at 569.000 kb on + strand, within HMPREF1078_RS09850at 569.040 kb on + strand, within HMPREF1078_RS09850at 569.040 kb on + strand, within HMPREF1078_RS09850at 569.041 kb on - strand, within HMPREF1078_RS09850at 569.044 kb on + strand, within HMPREF1078_RS09850at 569.045 kb on - strand, within HMPREF1078_RS09850at 569.050 kb on + strand, within HMPREF1078_RS09850at 569.050 kb on - strand, within HMPREF1078_RS09850at 569.051 kb on - strand, within HMPREF1078_RS09850at 569.156 kb on + strand, within HMPREF1078_RS09850at 569.156 kb on + strand, within HMPREF1078_RS09850at 569.156 kb on + strand, within HMPREF1078_RS09850at 569.158 kb on + strand, within HMPREF1078_RS09850at 569.159 kb on - strand, within HMPREF1078_RS09850at 569.159 kb on - strand, within HMPREF1078_RS09850at 569.214 kb on + strand, within HMPREF1078_RS09850at 569.246 kb on + strand, within HMPREF1078_RS09850at 569.261 kb on + strand, within HMPREF1078_RS09850at 569.262 kb on - strand, within HMPREF1078_RS09850at 569.262 kb on - strand, within HMPREF1078_RS09850at 569.263 kb on + strand, within HMPREF1078_RS09850at 569.264 kb on - strand, within HMPREF1078_RS09850at 569.374 kb on + strand, within HMPREF1078_RS09850at 569.375 kb on - strand, within HMPREF1078_RS09850at 569.377 kb on - strand, within HMPREF1078_RS09850at 569.434 kb on - strand, within HMPREF1078_RS09850at 569.434 kb on - strand, within HMPREF1078_RS09850at 569.437 kb on - strand, within HMPREF1078_RS09850at 569.437 kb on - strand, within HMPREF1078_RS09850at 569.458 kb on - strand, within HMPREF1078_RS09850at 569.458 kb on - strand, within HMPREF1078_RS09850at 569.587 kb on + strand, within HMPREF1078_RS09850at 569.587 kb on + strand, within HMPREF1078_RS09850at 569.607 kb on + strand, within HMPREF1078_RS09850at 569.607 kb on + strand, within HMPREF1078_RS09850at 569.613 kb on + strand, within HMPREF1078_RS09850at 569.614 kb on - strand, within HMPREF1078_RS09850at 569.652 kb on + strand, within HMPREF1078_RS09850at 569.653 kb on - strand, within HMPREF1078_RS09850at 569.653 kb on - strand, within HMPREF1078_RS09850at 569.653 kb on - strand, within HMPREF1078_RS09850at 569.657 kb on - strand, within HMPREF1078_RS09850at 569.694 kb on + strand, within HMPREF1078_RS09850at 569.694 kb on + strand, within HMPREF1078_RS09850at 569.694 kb on + strand, within HMPREF1078_RS09850at 569.695 kb on - strand, within HMPREF1078_RS09850at 569.715 kb on + strand, within HMPREF1078_RS09850at 569.715 kb on + strand, within HMPREF1078_RS09850at 569.715 kb on + strand, within HMPREF1078_RS09850at 569.731 kb on - strand, within HMPREF1078_RS09850at 569.734 kb on + strand, within HMPREF1078_RS09850at 569.734 kb on + strand, within HMPREF1078_RS09850at 569.734 kb on + strand, within HMPREF1078_RS09850at 569.734 kb on + strand, within HMPREF1078_RS09850at 569.734 kb on + strand, within HMPREF1078_RS09850at 569.734 kb on + strand, within HMPREF1078_RS09850at 569.734 kb on + strand, within HMPREF1078_RS09850at 569.735 kb on - strand, within HMPREF1078_RS09850at 569.735 kb on - strand, within HMPREF1078_RS09850at 569.735 kb on - strand, within HMPREF1078_RS09850at 569.735 kb on - strand, within HMPREF1078_RS09850at 569.735 kb on - strand, within HMPREF1078_RS09850at 569.735 kb on - strand, within HMPREF1078_RS09850at 569.785 kb on + strand, within HMPREF1078_RS09850at 569.836 kb on + strand, within HMPREF1078_RS09850at 569.836 kb on + strand, within HMPREF1078_RS09850at 569.836 kb on + strand, within HMPREF1078_RS09850at 569.836 kb on + strand, within HMPREF1078_RS09850at 569.924 kb on + strand, within HMPREF1078_RS09850at 569.956 kb on + strand, within HMPREF1078_RS09850at 570.317 kb on + strandat 570.594 kb on + strand, within HMPREF1078_RS09855at 570.597 kb on - strand, within HMPREF1078_RS09855at 570.599 kb on + strand, within HMPREF1078_RS09855at 570.600 kb on - strand, within HMPREF1078_RS09855at 570.606 kb on - strand, within HMPREF1078_RS09855at 570.615 kb on - strandat 570.667 kb on - strandat 570.668 kb on + strandat 570.668 kb on + strandat 570.687 kb on - strand, within HMPREF1078_RS09860at 570.759 kb on + strand, within HMPREF1078_RS09860at 570.759 kb on + strand, within HMPREF1078_RS09860at 570.851 kb on - strand, within HMPREF1078_RS09860at 570.941 kb on - strand, within HMPREF1078_RS09860at 570.943 kb on - strand, within HMPREF1078_RS09860at 570.948 kb on - strand, within HMPREF1078_RS09860at 570.948 kb on - strand, within HMPREF1078_RS09860at 570.984 kb on + strand, within HMPREF1078_RS09860at 570.985 kb on - strand, within HMPREF1078_RS09860at 571.017 kb on + strandat 571.017 kb on + strandat 571.018 kb on - strandat 571.018 kb on - strandat 571.030 kb on + strandat 571.077 kb on + strandat 571.105 kb on - strandat 571.123 kb on - strandat 571.127 kb on - strandat 571.135 kb on + strandat 571.139 kb on + strandat 571.139 kb on + strandat 571.139 kb on + strandat 571.139 kb on + strandat 571.139 kb on + strandat 571.139 kb on + strandat 571.140 kb on - strandat 571.140 kb on - strandat 571.140 kb on - strandat 571.147 kb on - strandat 571.151 kb on - strandat 571.151 kb on - strandat 571.163 kb on + strandat 571.164 kb on - strandat 571.206 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C)
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568,166 - -1.6
568,177 + +0.6
568,192 + -1.4
568,231 + -0.8
568,247 + -1.6
568,248 - +1.9
568,248 - +1.4
568,248 - +0.9
568,269 - -0.4
568,280 - +0.4
568,285 + -0.2
568,285 + -0.8
568,286 - +0.6
568,287 + +1.5
568,287 + +0.2
568,288 - +2.1
568,332 - -0.8
568,529 + +1.8
568,612 + -1.3
568,613 - +0.3
568,613 - +1.6
568,616 + +1.7
568,616 + -1.9
568,616 + -1.1
568,617 - +1.2
568,621 - +0.0
568,661 + +0.4
568,672 + +0.4
568,780 - -0.2
568,841 + HMPREF1078_RS09850 0.13 +1.0
568,847 - HMPREF1078_RS09850 0.13 +2.6
568,850 - HMPREF1078_RS09850 0.14 +2.1
568,891 - HMPREF1078_RS09850 0.16 -1.6
568,891 - HMPREF1078_RS09850 0.16 -0.4
568,891 - HMPREF1078_RS09850 0.16 -3.4
568,909 - HMPREF1078_RS09850 0.17 -1.0
568,939 + HMPREF1078_RS09850 0.19 -0.7
568,939 + HMPREF1078_RS09850 0.19 +0.3
568,940 - HMPREF1078_RS09850 0.19 +0.5
568,941 + HMPREF1078_RS09850 0.19 -2.1
568,941 + HMPREF1078_RS09850 0.19 +0.0
568,959 - HMPREF1078_RS09850 0.20 +0.5
568,973 + HMPREF1078_RS09850 0.21 -0.6
569,000 + HMPREF1078_RS09850 0.23 -2.8
569,040 + HMPREF1078_RS09850 0.26 -2.1
569,040 + HMPREF1078_RS09850 0.26 -0.3
569,041 - HMPREF1078_RS09850 0.26 +0.1
569,044 + HMPREF1078_RS09850 0.26 +0.0
569,045 - HMPREF1078_RS09850 0.26 +0.0
569,050 + HMPREF1078_RS09850 0.26 -0.1
569,050 - HMPREF1078_RS09850 0.26 +0.7
569,051 - HMPREF1078_RS09850 0.26 -0.3
569,156 + HMPREF1078_RS09850 0.33 -2.5
569,156 + HMPREF1078_RS09850 0.33 -4.7
569,156 + HMPREF1078_RS09850 0.33 -0.0
569,158 + HMPREF1078_RS09850 0.33 -1.9
569,159 - HMPREF1078_RS09850 0.33 -1.0
569,159 - HMPREF1078_RS09850 0.33 -1.2
569,214 + HMPREF1078_RS09850 0.37 -1.7
569,246 + HMPREF1078_RS09850 0.39 +1.2
569,261 + HMPREF1078_RS09850 0.40 -0.0
569,262 - HMPREF1078_RS09850 0.40 +0.9
569,262 - HMPREF1078_RS09850 0.40 +0.0
569,263 + HMPREF1078_RS09850 0.40 -1.3
569,264 - HMPREF1078_RS09850 0.40 +1.0
569,374 + HMPREF1078_RS09850 0.47 +3.5
569,375 - HMPREF1078_RS09850 0.47 +2.1
569,377 - HMPREF1078_RS09850 0.47 -2.6
569,434 - HMPREF1078_RS09850 0.51 +0.5
569,434 - HMPREF1078_RS09850 0.51 -0.5
569,437 - HMPREF1078_RS09850 0.51 -1.7
569,437 - HMPREF1078_RS09850 0.51 +0.1
569,458 - HMPREF1078_RS09850 0.52 -0.6
569,458 - HMPREF1078_RS09850 0.52 +1.1
569,587 + HMPREF1078_RS09850 0.60 -1.6
569,587 + HMPREF1078_RS09850 0.60 -0.9
569,607 + HMPREF1078_RS09850 0.62 -1.8
569,607 + HMPREF1078_RS09850 0.62 -0.0
569,613 + HMPREF1078_RS09850 0.62 +0.7
569,614 - HMPREF1078_RS09850 0.62 -0.0
569,652 + HMPREF1078_RS09850 0.65 -0.2
569,653 - HMPREF1078_RS09850 0.65 -1.0
569,653 - HMPREF1078_RS09850 0.65 -2.3
569,653 - HMPREF1078_RS09850 0.65 -2.5
569,657 - HMPREF1078_RS09850 0.65 -0.0
569,694 + HMPREF1078_RS09850 0.67 +1.5
569,694 + HMPREF1078_RS09850 0.67 +0.3
569,694 + HMPREF1078_RS09850 0.67 -0.0
569,695 - HMPREF1078_RS09850 0.67 +0.7
569,715 + HMPREF1078_RS09850 0.69 -0.6
569,715 + HMPREF1078_RS09850 0.69 -3.1
569,715 + HMPREF1078_RS09850 0.69 +0.8
569,731 - HMPREF1078_RS09850 0.70 -0.5
569,734 + HMPREF1078_RS09850 0.70 -2.2
569,734 + HMPREF1078_RS09850 0.70 -0.3
569,734 + HMPREF1078_RS09850 0.70 -1.0
569,734 + HMPREF1078_RS09850 0.70 -0.4
569,734 + HMPREF1078_RS09850 0.70 +0.3
569,734 + HMPREF1078_RS09850 0.70 +0.2
569,734 + HMPREF1078_RS09850 0.70 -2.0
569,735 - HMPREF1078_RS09850 0.70 -0.2
569,735 - HMPREF1078_RS09850 0.70 -2.4
569,735 - HMPREF1078_RS09850 0.70 -1.4
569,735 - HMPREF1078_RS09850 0.70 +1.2
569,735 - HMPREF1078_RS09850 0.70 -2.0
569,735 - HMPREF1078_RS09850 0.70 +0.6
569,785 + HMPREF1078_RS09850 0.73 +1.6
569,836 + HMPREF1078_RS09850 0.76 +0.9
569,836 + HMPREF1078_RS09850 0.76 +0.7
569,836 + HMPREF1078_RS09850 0.76 -1.7
569,836 + HMPREF1078_RS09850 0.76 -2.8
569,924 + HMPREF1078_RS09850 0.82 -1.6
569,956 + HMPREF1078_RS09850 0.84 +0.6
570,317 + +1.8
570,594 + HMPREF1078_RS09855 0.86 -1.7
570,597 - HMPREF1078_RS09855 0.87 +1.3
570,599 + HMPREF1078_RS09855 0.87 -2.8
570,600 - HMPREF1078_RS09855 0.88 +1.0
570,606 - HMPREF1078_RS09855 0.89 +0.2
570,615 - +1.2
570,667 - -2.3
570,668 + -3.6
570,668 + +1.1
570,687 - HMPREF1078_RS09860 0.12 -1.1
570,759 + HMPREF1078_RS09860 0.29 +2.6
570,759 + HMPREF1078_RS09860 0.29 +1.6
570,851 - HMPREF1078_RS09860 0.51 +1.0
570,941 - HMPREF1078_RS09860 0.72 -1.5
570,943 - HMPREF1078_RS09860 0.73 -1.2
570,948 - HMPREF1078_RS09860 0.74 -0.8
570,948 - HMPREF1078_RS09860 0.74 -1.1
570,984 + HMPREF1078_RS09860 0.83 -1.1
570,985 - HMPREF1078_RS09860 0.83 +1.6
571,017 + +0.9
571,017 + +0.7
571,018 - -3.6
571,018 - -0.1
571,030 + +1.1
571,077 + -1.6
571,105 - +1.0
571,123 - -0.0
571,127 - +0.9
571,135 + -0.4
571,139 + +0.3
571,139 + +0.1
571,139 + -0.1
571,139 + -1.7
571,139 + +0.3
571,139 + -2.3
571,140 - +0.1
571,140 - -0.7
571,140 - -1.2
571,147 - +1.7
571,151 - +0.7
571,151 - +1.3
571,163 + -2.5
571,164 - -0.7
571,206 + -0.4

Or see this region's nucleotide sequence