Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09045 and HMPREF1078_RS09050 are separated by 31 nucleotides HMPREF1078_RS09050 and HMPREF1078_RS09055 are separated by 6 nucleotides HMPREF1078_RS09055 and HMPREF1078_RS09060 overlap by 20 nucleotides HMPREF1078_RS09060 and HMPREF1078_RS09065 are separated by 34 nucleotides
HMPREF1078_RS09045: HMPREF1078_RS09045 - conjugative transposon protein TraJ, at 410,001 to 411,005
_RS09045
HMPREF1078_RS09050: HMPREF1078_RS09050 - conjugative transposon protein TraK, at 411,037 to 411,660
_RS09050
HMPREF1078_RS09055: HMPREF1078_RS09055 - TraL conjugative transposon family protein, at 411,667 to 411,975
_RS09055
HMPREF1078_RS09060: HMPREF1078_RS09060 - conjugative transposon protein TraM, at 411,956 to 413,308
_RS09060
HMPREF1078_RS09065: HMPREF1078_RS09065 - conjugative transposon protein TraN, at 413,343 to 414,329
_RS09065
Position (kb) 411
412
413
414 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 411.034 kb on + strand at 411.035 kb on - strand at 411.054 kb on + strand at 411.083 kb on + strand at 411.083 kb on + strand at 411.084 kb on - strand at 411.084 kb on - strand at 411.084 kb on - strand at 411.184 kb on + strand, within HMPREF1078_RS09050 at 411.185 kb on - strand, within HMPREF1078_RS09050 at 411.300 kb on - strand, within HMPREF1078_RS09050 at 411.368 kb on - strand, within HMPREF1078_RS09050 at 411.401 kb on - strand, within HMPREF1078_RS09050 at 411.482 kb on - strand, within HMPREF1078_RS09050 at 411.497 kb on - strand, within HMPREF1078_RS09050 at 411.751 kb on + strand, within HMPREF1078_RS09055 at 411.752 kb on - strand, within HMPREF1078_RS09055 at 411.941 kb on + strand, within HMPREF1078_RS09055 at 411.941 kb on + strand, within HMPREF1078_RS09055 at 411.942 kb on - strand, within HMPREF1078_RS09055 at 411.950 kb on - strand at 411.953 kb on + strand at 412.122 kb on + strand, within HMPREF1078_RS09060 at 412.235 kb on + strand, within HMPREF1078_RS09060 at 412.593 kb on - strand, within HMPREF1078_RS09060 at 412.611 kb on - strand, within HMPREF1078_RS09060 at 412.753 kb on + strand, within HMPREF1078_RS09060 at 412.974 kb on + strand, within HMPREF1078_RS09060 at 413.016 kb on - strand, within HMPREF1078_RS09060 at 413.229 kb on - strand at 413.342 kb on - strand at 413.353 kb on + strand at 413.386 kb on + strand at 413.387 kb on - strand at 413.387 kb on - strand at 413.491 kb on + strand, within HMPREF1078_RS09065 at 413.491 kb on + strand, within HMPREF1078_RS09065 at 413.560 kb on - strand, within HMPREF1078_RS09065 at 413.601 kb on + strand, within HMPREF1078_RS09065 at 413.736 kb on + strand, within HMPREF1078_RS09065 at 413.965 kb on - strand, within HMPREF1078_RS09065 at 413.982 kb on + strand, within HMPREF1078_RS09065 at 414.142 kb on - strand, within HMPREF1078_RS09065
Per-strain Table
Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C) remove 411,034 + -0.5 411,035 - +2.3 411,054 + +0.6 411,083 + -1.2 411,083 + -0.8 411,084 - -1.7 411,084 - -2.4 411,084 - -0.8 411,184 + HMPREF1078_RS09050 0.24 +0.6 411,185 - HMPREF1078_RS09050 0.24 -0.1 411,300 - HMPREF1078_RS09050 0.42 -0.2 411,368 - HMPREF1078_RS09050 0.53 -0.5 411,401 - HMPREF1078_RS09050 0.58 +0.0 411,482 - HMPREF1078_RS09050 0.71 +0.7 411,497 - HMPREF1078_RS09050 0.74 -1.2 411,751 + HMPREF1078_RS09055 0.27 -2.1 411,752 - HMPREF1078_RS09055 0.28 +0.2 411,941 + HMPREF1078_RS09055 0.89 -0.1 411,941 + HMPREF1078_RS09055 0.89 -3.4 411,942 - HMPREF1078_RS09055 0.89 -0.1 411,950 - -0.5 411,953 + -0.8 412,122 + HMPREF1078_RS09060 0.12 -0.2 412,235 + HMPREF1078_RS09060 0.21 -0.5 412,593 - HMPREF1078_RS09060 0.47 -1.2 412,611 - HMPREF1078_RS09060 0.48 -0.9 412,753 + HMPREF1078_RS09060 0.59 -3.5 412,974 + HMPREF1078_RS09060 0.75 -1.4 413,016 - HMPREF1078_RS09060 0.78 +0.8 413,229 - +0.1 413,342 - -0.3 413,353 + -0.7 413,386 + -0.6 413,387 - +1.3 413,387 - -1.7 413,491 + HMPREF1078_RS09065 0.15 +0.3 413,491 + HMPREF1078_RS09065 0.15 -0.3 413,560 - HMPREF1078_RS09065 0.22 +0.1 413,601 + HMPREF1078_RS09065 0.26 -0.3 413,736 + HMPREF1078_RS09065 0.40 -1.2 413,965 - HMPREF1078_RS09065 0.63 +0.3 413,982 + HMPREF1078_RS09065 0.65 +0.4 414,142 - HMPREF1078_RS09065 0.81 +0.3
Or see this region's nucleotide sequence