Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08685 and HMPREF1078_RS08690 are separated by 164 nucleotides HMPREF1078_RS08690 and HMPREF1078_RS08695 are separated by 254 nucleotides
HMPREF1078_RS08685: HMPREF1078_RS08685 - ribokinase, at 320,077 to 321,006
_RS08685
HMPREF1078_RS08690: HMPREF1078_RS08690 - hypothetical protein, at 321,171 to 322,718
_RS08690
HMPREF1078_RS08695: HMPREF1078_RS08695 - alpha/beta hydrolase, at 322,973 to 323,941
_RS08695
Position (kb) 321
322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 320.223 kb on + strand, within HMPREF1078_RS08685 at 320.228 kb on - strand, within HMPREF1078_RS08685 at 320.304 kb on + strand, within HMPREF1078_RS08685 at 320.304 kb on + strand, within HMPREF1078_RS08685 at 320.328 kb on + strand, within HMPREF1078_RS08685 at 320.329 kb on - strand, within HMPREF1078_RS08685 at 320.331 kb on + strand, within HMPREF1078_RS08685 at 320.331 kb on + strand, within HMPREF1078_RS08685 at 320.331 kb on + strand, within HMPREF1078_RS08685 at 320.334 kb on + strand, within HMPREF1078_RS08685 at 320.334 kb on + strand, within HMPREF1078_RS08685 at 320.334 kb on + strand, within HMPREF1078_RS08685 at 320.334 kb on + strand, within HMPREF1078_RS08685 at 320.334 kb on + strand, within HMPREF1078_RS08685 at 320.335 kb on - strand, within HMPREF1078_RS08685 at 320.335 kb on - strand, within HMPREF1078_RS08685 at 320.389 kb on - strand, within HMPREF1078_RS08685 at 320.450 kb on + strand, within HMPREF1078_RS08685 at 320.453 kb on - strand, within HMPREF1078_RS08685 at 320.621 kb on - strand, within HMPREF1078_RS08685 at 320.738 kb on + strand, within HMPREF1078_RS08685 at 320.745 kb on + strand, within HMPREF1078_RS08685 at 320.745 kb on + strand, within HMPREF1078_RS08685 at 320.815 kb on - strand, within HMPREF1078_RS08685 at 320.939 kb on - strand at 320.953 kb on - strand at 321.007 kb on - strand at 321.007 kb on - strand at 321.018 kb on + strand at 321.018 kb on + strand at 321.022 kb on - strand at 321.056 kb on + strand at 321.057 kb on - strand at 321.058 kb on + strand at 321.058 kb on + strand at 321.061 kb on + strand at 321.062 kb on - strand at 321.065 kb on + strand at 321.065 kb on + strand at 321.066 kb on - strand at 321.066 kb on - strand at 321.066 kb on - strand at 321.129 kb on + strand at 321.129 kb on + strand at 321.130 kb on - strand at 321.135 kb on - strand at 321.136 kb on + strand at 321.151 kb on - strand at 321.205 kb on + strand at 321.252 kb on + strand at 321.254 kb on + strand at 321.255 kb on - strand at 321.255 kb on - strand at 321.255 kb on - strand at 321.283 kb on - strand at 321.284 kb on + strand at 321.284 kb on + strand at 321.284 kb on + strand at 321.292 kb on + strand at 321.295 kb on - strand at 321.332 kb on - strand, within HMPREF1078_RS08690 at 321.333 kb on + strand, within HMPREF1078_RS08690 at 321.442 kb on + strand, within HMPREF1078_RS08690 at 321.442 kb on + strand, within HMPREF1078_RS08690 at 321.452 kb on + strand, within HMPREF1078_RS08690 at 321.452 kb on + strand, within HMPREF1078_RS08690 at 321.553 kb on - strand, within HMPREF1078_RS08690 at 321.605 kb on - strand, within HMPREF1078_RS08690 at 321.673 kb on + strand, within HMPREF1078_RS08690 at 321.682 kb on - strand, within HMPREF1078_RS08690 at 321.712 kb on + strand, within HMPREF1078_RS08690 at 321.712 kb on + strand, within HMPREF1078_RS08690 at 321.712 kb on + strand, within HMPREF1078_RS08690 at 321.713 kb on - strand, within HMPREF1078_RS08690 at 321.713 kb on - strand, within HMPREF1078_RS08690 at 321.714 kb on + strand, within HMPREF1078_RS08690 at 321.715 kb on - strand, within HMPREF1078_RS08690 at 321.720 kb on - strand, within HMPREF1078_RS08690 at 321.738 kb on - strand, within HMPREF1078_RS08690 at 321.738 kb on - strand, within HMPREF1078_RS08690 at 321.742 kb on - strand, within HMPREF1078_RS08690 at 321.742 kb on - strand, within HMPREF1078_RS08690 at 321.750 kb on + strand, within HMPREF1078_RS08690 at 321.879 kb on + strand, within HMPREF1078_RS08690 at 321.918 kb on + strand, within HMPREF1078_RS08690 at 321.958 kb on + strand, within HMPREF1078_RS08690 at 321.959 kb on - strand, within HMPREF1078_RS08690 at 321.995 kb on - strand, within HMPREF1078_RS08690 at 322.003 kb on + strand, within HMPREF1078_RS08690 at 322.004 kb on - strand, within HMPREF1078_RS08690 at 322.030 kb on + strand, within HMPREF1078_RS08690 at 322.031 kb on - strand, within HMPREF1078_RS08690 at 322.111 kb on + strand, within HMPREF1078_RS08690 at 322.111 kb on + strand, within HMPREF1078_RS08690 at 322.126 kb on - strand, within HMPREF1078_RS08690 at 322.131 kb on + strand, within HMPREF1078_RS08690 at 322.132 kb on - strand, within HMPREF1078_RS08690 at 322.184 kb on + strand, within HMPREF1078_RS08690 at 322.185 kb on - strand, within HMPREF1078_RS08690 at 322.185 kb on - strand, within HMPREF1078_RS08690 at 322.194 kb on + strand, within HMPREF1078_RS08690 at 322.195 kb on - strand, within HMPREF1078_RS08690 at 322.195 kb on - strand, within HMPREF1078_RS08690 at 322.195 kb on - strand, within HMPREF1078_RS08690 at 322.195 kb on - strand, within HMPREF1078_RS08690 at 322.212 kb on - strand, within HMPREF1078_RS08690 at 322.247 kb on - strand, within HMPREF1078_RS08690 at 322.261 kb on - strand, within HMPREF1078_RS08690 at 322.435 kb on + strand, within HMPREF1078_RS08690 at 322.435 kb on + strand, within HMPREF1078_RS08690 at 322.476 kb on + strand, within HMPREF1078_RS08690 at 322.478 kb on + strand, within HMPREF1078_RS08690 at 322.479 kb on - strand, within HMPREF1078_RS08690 at 322.495 kb on + strand, within HMPREF1078_RS08690 at 322.574 kb on + strand at 322.574 kb on + strand at 322.575 kb on - strand at 322.576 kb on + strand at 322.576 kb on + strand at 322.577 kb on - strand at 322.632 kb on - strand at 322.699 kb on - strand at 322.699 kb on - strand at 322.699 kb on - strand at 322.700 kb on + strand at 322.701 kb on - strand at 322.729 kb on - strand at 322.820 kb on + strand at 322.820 kb on + strand at 322.821 kb on - strand at 322.821 kb on - strand at 322.821 kb on - strand at 322.875 kb on + strand at 322.930 kb on - strand at 322.943 kb on - strand at 322.943 kb on - strand at 322.945 kb on - strand at 322.945 kb on - strand at 322.969 kb on - strand at 322.969 kb on - strand at 323.024 kb on + strand at 323.025 kb on - strand at 323.042 kb on - strand at 323.087 kb on - strand, within HMPREF1078_RS08695 at 323.087 kb on - strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.091 kb on - strand, within HMPREF1078_RS08695 at 323.091 kb on - strand, within HMPREF1078_RS08695 at 323.091 kb on - strand, within HMPREF1078_RS08695 at 323.091 kb on - strand, within HMPREF1078_RS08695 at 323.091 kb on - strand, within HMPREF1078_RS08695 at 323.091 kb on - strand, within HMPREF1078_RS08695 at 323.091 kb on - strand, within HMPREF1078_RS08695 at 323.092 kb on + strand, within HMPREF1078_RS08695 at 323.093 kb on - strand, within HMPREF1078_RS08695 at 323.131 kb on + strand, within HMPREF1078_RS08695 at 323.232 kb on - strand, within HMPREF1078_RS08695 at 323.261 kb on + strand, within HMPREF1078_RS08695 at 323.266 kb on - strand, within HMPREF1078_RS08695 at 323.266 kb on - strand, within HMPREF1078_RS08695 at 323.320 kb on + strand, within HMPREF1078_RS08695 at 323.380 kb on + strand, within HMPREF1078_RS08695 at 323.381 kb on - strand, within HMPREF1078_RS08695 at 323.381 kb on - strand, within HMPREF1078_RS08695 at 323.533 kb on + strand, within HMPREF1078_RS08695 at 323.534 kb on - strand, within HMPREF1078_RS08695 at 323.534 kb on - strand, within HMPREF1078_RS08695 at 323.534 kb on - strand, within HMPREF1078_RS08695 at 323.539 kb on - strand, within HMPREF1078_RS08695 at 323.539 kb on - strand, within HMPREF1078_RS08695 at 323.630 kb on + strand, within HMPREF1078_RS08695 at 323.631 kb on - strand, within HMPREF1078_RS08695 at 323.633 kb on + strand, within HMPREF1078_RS08695 at 323.633 kb on + strand, within HMPREF1078_RS08695 at 323.636 kb on - strand, within HMPREF1078_RS08695
Per-strain Table
Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C) remove 320,223 + HMPREF1078_RS08685 0.16 +1.1 320,228 - HMPREF1078_RS08685 0.16 -0.7 320,304 + HMPREF1078_RS08685 0.24 +0.9 320,304 + HMPREF1078_RS08685 0.24 +1.9 320,328 + HMPREF1078_RS08685 0.27 -0.1 320,329 - HMPREF1078_RS08685 0.27 -3.3 320,331 + HMPREF1078_RS08685 0.27 +0.5 320,331 + HMPREF1078_RS08685 0.27 -0.3 320,331 + HMPREF1078_RS08685 0.27 +0.0 320,334 + HMPREF1078_RS08685 0.28 +0.1 320,334 + HMPREF1078_RS08685 0.28 -0.9 320,334 + HMPREF1078_RS08685 0.28 +0.0 320,334 + HMPREF1078_RS08685 0.28 -2.7 320,334 + HMPREF1078_RS08685 0.28 +0.0 320,335 - HMPREF1078_RS08685 0.28 -1.9 320,335 - HMPREF1078_RS08685 0.28 -0.2 320,389 - HMPREF1078_RS08685 0.34 +1.1 320,450 + HMPREF1078_RS08685 0.40 +0.2 320,453 - HMPREF1078_RS08685 0.40 -0.2 320,621 - HMPREF1078_RS08685 0.58 +0.9 320,738 + HMPREF1078_RS08685 0.71 -0.3 320,745 + HMPREF1078_RS08685 0.72 +1.3 320,745 + HMPREF1078_RS08685 0.72 +2.2 320,815 - HMPREF1078_RS08685 0.79 +1.0 320,939 - -0.4 320,953 - -0.1 321,007 - -0.6 321,007 - -1.4 321,018 + -2.1 321,018 + -0.1 321,022 - -2.1 321,056 + -0.6 321,057 - -0.1 321,058 + +0.9 321,058 + +0.7 321,061 + -1.8 321,062 - -0.5 321,065 + +1.1 321,065 + -0.2 321,066 - +0.6 321,066 - +0.2 321,066 - -3.2 321,129 + -2.4 321,129 + -1.3 321,130 - -0.3 321,135 - +0.9 321,136 + -2.9 321,151 - -1.1 321,205 + -1.6 321,252 + -1.9 321,254 + -1.5 321,255 - -3.4 321,255 - -0.5 321,255 - -1.9 321,283 - -2.5 321,284 + -1.2 321,284 + -1.8 321,284 + +1.6 321,292 + +1.5 321,295 - +1.3 321,332 - HMPREF1078_RS08690 0.10 +3.3 321,333 + HMPREF1078_RS08690 0.10 +0.9 321,442 + HMPREF1078_RS08690 0.18 +0.1 321,442 + HMPREF1078_RS08690 0.18 +0.2 321,452 + HMPREF1078_RS08690 0.18 +0.3 321,452 + HMPREF1078_RS08690 0.18 +1.2 321,553 - HMPREF1078_RS08690 0.25 -2.1 321,605 - HMPREF1078_RS08690 0.28 +1.2 321,673 + HMPREF1078_RS08690 0.32 -1.9 321,682 - HMPREF1078_RS08690 0.33 +1.6 321,712 + HMPREF1078_RS08690 0.35 -0.9 321,712 + HMPREF1078_RS08690 0.35 -0.2 321,712 + HMPREF1078_RS08690 0.35 -1.9 321,713 - HMPREF1078_RS08690 0.35 +0.2 321,713 - HMPREF1078_RS08690 0.35 -0.1 321,714 + HMPREF1078_RS08690 0.35 +0.6 321,715 - HMPREF1078_RS08690 0.35 +1.4 321,720 - HMPREF1078_RS08690 0.35 +0.9 321,738 - HMPREF1078_RS08690 0.37 -1.6 321,738 - HMPREF1078_RS08690 0.37 +0.3 321,742 - HMPREF1078_RS08690 0.37 +0.1 321,742 - HMPREF1078_RS08690 0.37 -0.6 321,750 + HMPREF1078_RS08690 0.37 -0.1 321,879 + HMPREF1078_RS08690 0.46 -0.0 321,918 + HMPREF1078_RS08690 0.48 +0.8 321,958 + HMPREF1078_RS08690 0.51 -0.1 321,959 - HMPREF1078_RS08690 0.51 -1.6 321,995 - HMPREF1078_RS08690 0.53 +0.8 322,003 + HMPREF1078_RS08690 0.54 +0.9 322,004 - HMPREF1078_RS08690 0.54 -3.1 322,030 + HMPREF1078_RS08690 0.55 -1.3 322,031 - HMPREF1078_RS08690 0.56 +0.6 322,111 + HMPREF1078_RS08690 0.61 +0.9 322,111 + HMPREF1078_RS08690 0.61 -0.6 322,126 - HMPREF1078_RS08690 0.62 +1.4 322,131 + HMPREF1078_RS08690 0.62 -0.4 322,132 - HMPREF1078_RS08690 0.62 +1.4 322,184 + HMPREF1078_RS08690 0.65 +0.6 322,185 - HMPREF1078_RS08690 0.66 +1.0 322,185 - HMPREF1078_RS08690 0.66 +0.8 322,194 + HMPREF1078_RS08690 0.66 +1.6 322,195 - HMPREF1078_RS08690 0.66 -2.3 322,195 - HMPREF1078_RS08690 0.66 -1.8 322,195 - HMPREF1078_RS08690 0.66 -1.4 322,195 - HMPREF1078_RS08690 0.66 -0.4 322,212 - HMPREF1078_RS08690 0.67 +2.5 322,247 - HMPREF1078_RS08690 0.70 +0.5 322,261 - HMPREF1078_RS08690 0.70 +0.3 322,435 + HMPREF1078_RS08690 0.82 -1.8 322,435 + HMPREF1078_RS08690 0.82 -2.5 322,476 + HMPREF1078_RS08690 0.84 +1.3 322,478 + HMPREF1078_RS08690 0.84 -0.5 322,479 - HMPREF1078_RS08690 0.84 +1.0 322,495 + HMPREF1078_RS08690 0.86 +0.2 322,574 + -1.1 322,574 + -0.6 322,575 - -0.1 322,576 + +1.2 322,576 + -0.8 322,577 - -0.3 322,632 - -2.7 322,699 - -0.7 322,699 - -1.2 322,699 - +1.5 322,700 + +0.5 322,701 - -0.4 322,729 - +1.4 322,820 + +1.5 322,820 + -3.0 322,821 - +0.1 322,821 - -0.8 322,821 - -2.1 322,875 + -1.4 322,930 - -1.8 322,943 - -0.8 322,943 - -2.6 322,945 - -2.6 322,945 - +1.6 322,969 - -1.7 322,969 - -2.7 323,024 + +1.2 323,025 - +1.2 323,042 - +1.6 323,087 - HMPREF1078_RS08695 0.12 -0.6 323,087 - HMPREF1078_RS08695 0.12 -1.2 323,090 + HMPREF1078_RS08695 0.12 -0.9 323,090 + HMPREF1078_RS08695 0.12 +2.5 323,090 + HMPREF1078_RS08695 0.12 -0.2 323,090 + HMPREF1078_RS08695 0.12 +0.6 323,090 + HMPREF1078_RS08695 0.12 -1.1 323,090 + HMPREF1078_RS08695 0.12 -0.9 323,090 + HMPREF1078_RS08695 0.12 -0.1 323,090 + HMPREF1078_RS08695 0.12 -0.8 323,090 + HMPREF1078_RS08695 0.12 +2.0 323,091 - HMPREF1078_RS08695 0.12 -1.2 323,091 - HMPREF1078_RS08695 0.12 +0.9 323,091 - HMPREF1078_RS08695 0.12 +1.5 323,091 - HMPREF1078_RS08695 0.12 -2.8 323,091 - HMPREF1078_RS08695 0.12 -0.8 323,091 - HMPREF1078_RS08695 0.12 -1.6 323,091 - HMPREF1078_RS08695 0.12 +0.6 323,092 + HMPREF1078_RS08695 0.12 -1.7 323,093 - HMPREF1078_RS08695 0.12 -3.0 323,131 + HMPREF1078_RS08695 0.16 +0.0 323,232 - HMPREF1078_RS08695 0.27 -1.1 323,261 + HMPREF1078_RS08695 0.30 +0.7 323,266 - HMPREF1078_RS08695 0.30 -2.4 323,266 - HMPREF1078_RS08695 0.30 +0.3 323,320 + HMPREF1078_RS08695 0.36 -2.2 323,380 + HMPREF1078_RS08695 0.42 -2.1 323,381 - HMPREF1078_RS08695 0.42 -0.9 323,381 - HMPREF1078_RS08695 0.42 -1.9 323,533 + HMPREF1078_RS08695 0.58 -0.6 323,534 - HMPREF1078_RS08695 0.58 -1.8 323,534 - HMPREF1078_RS08695 0.58 +1.7 323,534 - HMPREF1078_RS08695 0.58 +1.1 323,539 - HMPREF1078_RS08695 0.58 +0.4 323,539 - HMPREF1078_RS08695 0.58 +1.7 323,630 + HMPREF1078_RS08695 0.68 +0.8 323,631 - HMPREF1078_RS08695 0.68 +1.1 323,633 + HMPREF1078_RS08695 0.68 -0.2 323,633 + HMPREF1078_RS08695 0.68 +1.1 323,636 - HMPREF1078_RS08695 0.68 +2.1
Or see this region's nucleotide sequence