Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07670 and HMPREF1078_RS07675 overlap by 46 nucleotides HMPREF1078_RS07675 and HMPREF1078_RS07680 are separated by 132 nucleotides HMPREF1078_RS07680 and HMPREF1078_RS07685 are separated by 28 nucleotides
HMPREF1078_RS07670: HMPREF1078_RS07670 - MATE family efflux transporter, at 72,750 to 74,144
_RS07670
HMPREF1078_RS07675: HMPREF1078_RS07675 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 74,099 to 74,500
_RS07675
HMPREF1078_RS07680: HMPREF1078_RS07680 - TolC family protein, at 74,633 to 76,036
_RS07680
HMPREF1078_RS07685: HMPREF1078_RS07685 - efflux RND transporter periplasmic adaptor subunit, at 76,065 to 77,180
_RS07685
Position (kb) 74
75
76
77 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 73.644 kb on + strand, within HMPREF1078_RS07670 at 73.644 kb on + strand, within HMPREF1078_RS07670 at 73.644 kb on + strand, within HMPREF1078_RS07670 at 73.725 kb on + strand, within HMPREF1078_RS07670 at 73.742 kb on + strand, within HMPREF1078_RS07670 at 73.747 kb on + strand, within HMPREF1078_RS07670 at 73.771 kb on + strand, within HMPREF1078_RS07670 at 73.772 kb on - strand, within HMPREF1078_RS07670 at 73.772 kb on - strand, within HMPREF1078_RS07670 at 73.808 kb on - strand, within HMPREF1078_RS07670 at 73.823 kb on - strand, within HMPREF1078_RS07670 at 73.891 kb on + strand, within HMPREF1078_RS07670 at 73.891 kb on + strand, within HMPREF1078_RS07670 at 73.892 kb on - strand, within HMPREF1078_RS07670 at 73.964 kb on + strand, within HMPREF1078_RS07670 at 73.965 kb on - strand, within HMPREF1078_RS07670 at 73.968 kb on + strand, within HMPREF1078_RS07670 at 73.968 kb on + strand, within HMPREF1078_RS07670 at 73.968 kb on + strand, within HMPREF1078_RS07670 at 73.993 kb on + strand, within HMPREF1078_RS07670 at 73.994 kb on - strand, within HMPREF1078_RS07670 at 74.026 kb on + strand at 74.059 kb on + strand at 74.059 kb on + strand at 74.060 kb on - strand at 74.060 kb on - strand at 74.060 kb on - strand at 74.060 kb on - strand at 74.060 kb on - strand at 74.061 kb on + strand at 74.061 kb on + strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.068 kb on - strand at 74.100 kb on + strand at 74.165 kb on - strand, within HMPREF1078_RS07675 at 74.165 kb on - strand, within HMPREF1078_RS07675 at 74.165 kb on - strand, within HMPREF1078_RS07675 at 74.165 kb on - strand, within HMPREF1078_RS07675 at 74.180 kb on + strand, within HMPREF1078_RS07675 at 74.180 kb on + strand, within HMPREF1078_RS07675 at 74.181 kb on - strand, within HMPREF1078_RS07675 at 74.185 kb on + strand, within HMPREF1078_RS07675 at 74.185 kb on + strand, within HMPREF1078_RS07675 at 74.185 kb on + strand, within HMPREF1078_RS07675 at 74.185 kb on + strand, within HMPREF1078_RS07675 at 74.186 kb on - strand, within HMPREF1078_RS07675 at 74.186 kb on - strand, within HMPREF1078_RS07675 at 74.194 kb on + strand, within HMPREF1078_RS07675 at 74.197 kb on - strand, within HMPREF1078_RS07675 at 74.197 kb on - strand, within HMPREF1078_RS07675 at 74.394 kb on - strand, within HMPREF1078_RS07675 at 74.401 kb on + strand, within HMPREF1078_RS07675 at 74.404 kb on - strand, within HMPREF1078_RS07675 at 74.404 kb on - strand, within HMPREF1078_RS07675 at 74.482 kb on - strand at 74.482 kb on - strand at 74.532 kb on - strand at 74.532 kb on - strand at 74.548 kb on - strand at 74.550 kb on - strand at 74.587 kb on - strand at 74.606 kb on + strand at 74.633 kb on - strand at 74.640 kb on + strand at 74.640 kb on + strand at 74.641 kb on - strand at 74.641 kb on - strand at 74.641 kb on - strand at 74.644 kb on + strand at 74.644 kb on + strand at 74.645 kb on - strand at 74.645 kb on - strand at 74.645 kb on - strand at 74.711 kb on + strand at 74.711 kb on + strand at 74.907 kb on + strand, within HMPREF1078_RS07680 at 74.907 kb on + strand, within HMPREF1078_RS07680 at 74.908 kb on - strand, within HMPREF1078_RS07680 at 74.917 kb on + strand, within HMPREF1078_RS07680 at 74.917 kb on + strand, within HMPREF1078_RS07680 at 74.918 kb on - strand, within HMPREF1078_RS07680 at 74.921 kb on + strand, within HMPREF1078_RS07680 at 74.969 kb on - strand, within HMPREF1078_RS07680 at 74.977 kb on + strand, within HMPREF1078_RS07680 at 74.977 kb on + strand, within HMPREF1078_RS07680 at 75.028 kb on + strand, within HMPREF1078_RS07680 at 75.028 kb on + strand, within HMPREF1078_RS07680 at 75.114 kb on - strand, within HMPREF1078_RS07680 at 75.158 kb on + strand, within HMPREF1078_RS07680 at 75.251 kb on + strand, within HMPREF1078_RS07680 at 75.342 kb on + strand, within HMPREF1078_RS07680 at 75.372 kb on + strand, within HMPREF1078_RS07680 at 75.477 kb on + strand, within HMPREF1078_RS07680 at 75.478 kb on - strand, within HMPREF1078_RS07680 at 75.621 kb on + strand, within HMPREF1078_RS07680 at 75.622 kb on - strand, within HMPREF1078_RS07680 at 75.629 kb on - strand, within HMPREF1078_RS07680 at 75.756 kb on + strand, within HMPREF1078_RS07680 at 75.756 kb on + strand, within HMPREF1078_RS07680 at 75.896 kb on - strand at 75.998 kb on + strand at 76.085 kb on - strand at 76.124 kb on + strand at 76.125 kb on - strand at 76.564 kb on - strand, within HMPREF1078_RS07685 at 76.585 kb on - strand, within HMPREF1078_RS07685 at 76.611 kb on + strand, within HMPREF1078_RS07685 at 76.611 kb on + strand, within HMPREF1078_RS07685 at 76.626 kb on + strand, within HMPREF1078_RS07685 at 76.627 kb on - strand, within HMPREF1078_RS07685 at 76.627 kb on - strand, within HMPREF1078_RS07685 at 76.662 kb on - strand, within HMPREF1078_RS07685 at 76.666 kb on + strand, within HMPREF1078_RS07685 at 76.667 kb on - strand, within HMPREF1078_RS07685 at 76.687 kb on - strand, within HMPREF1078_RS07685 at 76.687 kb on - strand, within HMPREF1078_RS07685 at 76.831 kb on - strand, within HMPREF1078_RS07685 at 76.921 kb on - strand, within HMPREF1078_RS07685 at 76.925 kb on + strand, within HMPREF1078_RS07685 at 76.926 kb on - strand, within HMPREF1078_RS07685 at 76.960 kb on - strand, within HMPREF1078_RS07685 at 77.017 kb on + strand, within HMPREF1078_RS07685
Per-strain Table
Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C) remove 73,644 + HMPREF1078_RS07670 0.64 +0.8 73,644 + HMPREF1078_RS07670 0.64 -1.2 73,644 + HMPREF1078_RS07670 0.64 +0.2 73,725 + HMPREF1078_RS07670 0.70 -0.1 73,742 + HMPREF1078_RS07670 0.71 -0.6 73,747 + HMPREF1078_RS07670 0.71 -1.7 73,771 + HMPREF1078_RS07670 0.73 +0.3 73,772 - HMPREF1078_RS07670 0.73 -0.1 73,772 - HMPREF1078_RS07670 0.73 +0.2 73,808 - HMPREF1078_RS07670 0.76 +0.0 73,823 - HMPREF1078_RS07670 0.77 +0.8 73,891 + HMPREF1078_RS07670 0.82 -0.7 73,891 + HMPREF1078_RS07670 0.82 +0.5 73,892 - HMPREF1078_RS07670 0.82 -0.8 73,964 + HMPREF1078_RS07670 0.87 -1.8 73,965 - HMPREF1078_RS07670 0.87 -2.3 73,968 + HMPREF1078_RS07670 0.87 +1.0 73,968 + HMPREF1078_RS07670 0.87 +0.1 73,968 + HMPREF1078_RS07670 0.87 +0.1 73,993 + HMPREF1078_RS07670 0.89 -0.9 73,994 - HMPREF1078_RS07670 0.89 +1.2 74,026 + -1.3 74,059 + -0.8 74,059 + +0.4 74,060 - -2.6 74,060 - +0.5 74,060 - -0.2 74,060 - -1.1 74,060 - -0.7 74,061 + -0.9 74,061 + -1.3 74,062 - -0.9 74,062 - +2.0 74,062 - -0.5 74,062 - -1.1 74,062 - +1.8 74,062 - -1.4 74,062 - +1.1 74,062 - -2.6 74,062 - -0.9 74,062 - -0.3 74,068 - +0.7 74,100 + +2.5 74,165 - HMPREF1078_RS07675 0.16 +0.1 74,165 - HMPREF1078_RS07675 0.16 +0.2 74,165 - HMPREF1078_RS07675 0.16 +3.3 74,165 - HMPREF1078_RS07675 0.16 +0.0 74,180 + HMPREF1078_RS07675 0.20 +1.5 74,180 + HMPREF1078_RS07675 0.20 -1.4 74,181 - HMPREF1078_RS07675 0.20 -2.4 74,185 + HMPREF1078_RS07675 0.21 +0.2 74,185 + HMPREF1078_RS07675 0.21 -0.2 74,185 + HMPREF1078_RS07675 0.21 +1.2 74,185 + HMPREF1078_RS07675 0.21 -0.1 74,186 - HMPREF1078_RS07675 0.22 -2.6 74,186 - HMPREF1078_RS07675 0.22 -0.8 74,194 + HMPREF1078_RS07675 0.24 -0.9 74,197 - HMPREF1078_RS07675 0.24 -1.5 74,197 - HMPREF1078_RS07675 0.24 -1.7 74,394 - HMPREF1078_RS07675 0.73 -1.6 74,401 + HMPREF1078_RS07675 0.75 -0.1 74,404 - HMPREF1078_RS07675 0.76 -0.2 74,404 - HMPREF1078_RS07675 0.76 -0.6 74,482 - -0.1 74,482 - -1.1 74,532 - +0.8 74,532 - -0.3 74,548 - -1.2 74,550 - +1.3 74,587 - -2.2 74,606 + +3.5 74,633 - +0.2 74,640 + -0.4 74,640 + -1.1 74,641 - -1.6 74,641 - +1.3 74,641 - -2.4 74,644 + +0.4 74,644 + +0.4 74,645 - +0.7 74,645 - -0.5 74,645 - -1.9 74,711 + -0.1 74,711 + +1.0 74,907 + HMPREF1078_RS07680 0.20 -1.3 74,907 + HMPREF1078_RS07680 0.20 -0.3 74,908 - HMPREF1078_RS07680 0.20 +0.2 74,917 + HMPREF1078_RS07680 0.20 -1.6 74,917 + HMPREF1078_RS07680 0.20 +0.8 74,918 - HMPREF1078_RS07680 0.20 +0.5 74,921 + HMPREF1078_RS07680 0.21 +1.4 74,969 - HMPREF1078_RS07680 0.24 -0.5 74,977 + HMPREF1078_RS07680 0.25 +0.9 74,977 + HMPREF1078_RS07680 0.25 -1.1 75,028 + HMPREF1078_RS07680 0.28 -0.1 75,028 + HMPREF1078_RS07680 0.28 -1.5 75,114 - HMPREF1078_RS07680 0.34 +0.4 75,158 + HMPREF1078_RS07680 0.37 -0.5 75,251 + HMPREF1078_RS07680 0.44 -1.6 75,342 + HMPREF1078_RS07680 0.50 -0.8 75,372 + HMPREF1078_RS07680 0.53 -0.9 75,477 + HMPREF1078_RS07680 0.60 -0.8 75,478 - HMPREF1078_RS07680 0.60 -1.9 75,621 + HMPREF1078_RS07680 0.70 +0.2 75,622 - HMPREF1078_RS07680 0.70 -0.1 75,629 - HMPREF1078_RS07680 0.71 -0.1 75,756 + HMPREF1078_RS07680 0.80 -0.2 75,756 + HMPREF1078_RS07680 0.80 +1.1 75,896 - -1.3 75,998 + -0.1 76,085 - -0.1 76,124 + -1.5 76,125 - -1.4 76,564 - HMPREF1078_RS07685 0.45 -0.8 76,585 - HMPREF1078_RS07685 0.47 -0.4 76,611 + HMPREF1078_RS07685 0.49 -0.6 76,611 + HMPREF1078_RS07685 0.49 -0.9 76,626 + HMPREF1078_RS07685 0.50 -2.0 76,627 - HMPREF1078_RS07685 0.50 +1.0 76,627 - HMPREF1078_RS07685 0.50 -1.3 76,662 - HMPREF1078_RS07685 0.53 -0.9 76,666 + HMPREF1078_RS07685 0.54 +1.2 76,667 - HMPREF1078_RS07685 0.54 -3.2 76,687 - HMPREF1078_RS07685 0.56 +1.6 76,687 - HMPREF1078_RS07685 0.56 +0.7 76,831 - HMPREF1078_RS07685 0.69 +1.5 76,921 - HMPREF1078_RS07685 0.77 -2.3 76,925 + HMPREF1078_RS07685 0.77 +0.5 76,926 - HMPREF1078_RS07685 0.77 -1.7 76,960 - HMPREF1078_RS07685 0.80 -0.2 77,017 + HMPREF1078_RS07685 0.85 +1.1
Or see this region's nucleotide sequence