Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS01410

Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS01405 and HMPREF1078_RS01410 are separated by 76 nucleotidesHMPREF1078_RS01410 and HMPREF1078_RS01415 are separated by 0 nucleotides HMPREF1078_RS01405: HMPREF1078_RS01405 - hypothetical protein, at 362,194 to 363,324 _RS01405 HMPREF1078_RS01410: HMPREF1078_RS01410 - L-serine ammonia-lyase, at 363,401 to 364,618 _RS01410 HMPREF1078_RS01415: HMPREF1078_RS01415 - glycoside hydrolase family 43 protein, at 364,619 to 365,617 _RS01415 Position (kb) 363 364 365Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 362.436 kb on + strand, within HMPREF1078_RS01405at 362.465 kb on - strand, within HMPREF1078_RS01405at 362.505 kb on - strand, within HMPREF1078_RS01405at 362.672 kb on - strand, within HMPREF1078_RS01405at 362.722 kb on + strand, within HMPREF1078_RS01405at 362.722 kb on + strand, within HMPREF1078_RS01405at 362.722 kb on + strand, within HMPREF1078_RS01405at 362.723 kb on - strand, within HMPREF1078_RS01405at 362.760 kb on + strand, within HMPREF1078_RS01405at 362.814 kb on - strand, within HMPREF1078_RS01405at 362.814 kb on - strand, within HMPREF1078_RS01405at 362.833 kb on + strand, within HMPREF1078_RS01405at 362.834 kb on - strand, within HMPREF1078_RS01405at 362.836 kb on - strand, within HMPREF1078_RS01405at 362.843 kb on + strand, within HMPREF1078_RS01405at 362.844 kb on - strand, within HMPREF1078_RS01405at 362.899 kb on - strand, within HMPREF1078_RS01405at 362.945 kb on + strand, within HMPREF1078_RS01405at 362.946 kb on - strand, within HMPREF1078_RS01405at 362.960 kb on + strand, within HMPREF1078_RS01405at 362.961 kb on - strand, within HMPREF1078_RS01405at 363.014 kb on + strand, within HMPREF1078_RS01405at 363.015 kb on - strand, within HMPREF1078_RS01405at 363.077 kb on - strand, within HMPREF1078_RS01405at 363.093 kb on + strand, within HMPREF1078_RS01405at 363.130 kb on + strand, within HMPREF1078_RS01405at 363.154 kb on + strand, within HMPREF1078_RS01405at 363.155 kb on - strand, within HMPREF1078_RS01405at 363.155 kb on - strand, within HMPREF1078_RS01405at 363.156 kb on + strand, within HMPREF1078_RS01405at 363.156 kb on + strand, within HMPREF1078_RS01405at 363.156 kb on + strand, within HMPREF1078_RS01405at 363.157 kb on - strand, within HMPREF1078_RS01405at 363.157 kb on - strand, within HMPREF1078_RS01405at 363.157 kb on - strand, within HMPREF1078_RS01405at 363.187 kb on - strand, within HMPREF1078_RS01405at 363.187 kb on - strand, within HMPREF1078_RS01405at 363.220 kb on + strandat 363.221 kb on - strandat 363.222 kb on + strandat 363.223 kb on - strandat 363.270 kb on + strandat 363.270 kb on + strandat 363.271 kb on - strandat 363.271 kb on - strandat 363.279 kb on - strandat 363.295 kb on + strandat 363.298 kb on - strandat 363.309 kb on - strandat 363.333 kb on - strandat 363.339 kb on + strandat 363.339 kb on + strandat 363.340 kb on - strandat 363.353 kb on - strandat 363.381 kb on - strandat 363.388 kb on - strandat 363.388 kb on - strandat 363.420 kb on + strandat 363.421 kb on - strandat 363.421 kb on - strandat 363.523 kb on + strand, within HMPREF1078_RS01410at 363.524 kb on - strand, within HMPREF1078_RS01410at 363.524 kb on - strand, within HMPREF1078_RS01410at 363.524 kb on - strand, within HMPREF1078_RS01410at 363.548 kb on - strand, within HMPREF1078_RS01410at 363.713 kb on + strand, within HMPREF1078_RS01410at 363.750 kb on - strand, within HMPREF1078_RS01410at 363.801 kb on + strand, within HMPREF1078_RS01410at 363.801 kb on + strand, within HMPREF1078_RS01410at 363.842 kb on + strand, within HMPREF1078_RS01410at 363.842 kb on + strand, within HMPREF1078_RS01410at 363.843 kb on - strand, within HMPREF1078_RS01410at 363.891 kb on + strand, within HMPREF1078_RS01410at 363.892 kb on - strand, within HMPREF1078_RS01410at 363.984 kb on - strand, within HMPREF1078_RS01410at 363.985 kb on + strand, within HMPREF1078_RS01410at 363.985 kb on + strand, within HMPREF1078_RS01410at 363.985 kb on + strand, within HMPREF1078_RS01410at 363.985 kb on + strand, within HMPREF1078_RS01410at 363.985 kb on + strand, within HMPREF1078_RS01410at 363.985 kb on + strand, within HMPREF1078_RS01410at 363.986 kb on + strand, within HMPREF1078_RS01410at 364.015 kb on + strand, within HMPREF1078_RS01410at 364.037 kb on + strand, within HMPREF1078_RS01410at 364.044 kb on - strand, within HMPREF1078_RS01410at 364.174 kb on + strand, within HMPREF1078_RS01410at 364.251 kb on + strand, within HMPREF1078_RS01410at 364.252 kb on - strand, within HMPREF1078_RS01410at 364.341 kb on - strand, within HMPREF1078_RS01410at 364.418 kb on - strand, within HMPREF1078_RS01410at 364.592 kb on - strandat 364.617 kb on - strandat 364.633 kb on - strandat 364.634 kb on + strandat 364.635 kb on - strandat 364.635 kb on - strandat 364.635 kb on - strandat 364.641 kb on + strandat 364.641 kb on + strandat 364.642 kb on - strandat 364.660 kb on - strandat 364.742 kb on + strand, within HMPREF1078_RS01415at 364.742 kb on + strand, within HMPREF1078_RS01415at 364.743 kb on - strand, within HMPREF1078_RS01415at 364.766 kb on + strand, within HMPREF1078_RS01415at 364.774 kb on + strand, within HMPREF1078_RS01415at 364.774 kb on + strand, within HMPREF1078_RS01415at 364.775 kb on - strand, within HMPREF1078_RS01415at 364.778 kb on + strand, within HMPREF1078_RS01415at 364.808 kb on + strand, within HMPREF1078_RS01415at 364.808 kb on + strand, within HMPREF1078_RS01415at 364.809 kb on - strand, within HMPREF1078_RS01415at 364.823 kb on + strand, within HMPREF1078_RS01415at 364.931 kb on - strand, within HMPREF1078_RS01415at 364.931 kb on - strand, within HMPREF1078_RS01415at 364.939 kb on + strand, within HMPREF1078_RS01415at 364.940 kb on - strand, within HMPREF1078_RS01415at 364.995 kb on + strand, within HMPREF1078_RS01415at 364.996 kb on - strand, within HMPREF1078_RS01415at 364.996 kb on - strand, within HMPREF1078_RS01415at 365.039 kb on + strand, within HMPREF1078_RS01415at 365.039 kb on + strand, within HMPREF1078_RS01415at 365.039 kb on + strand, within HMPREF1078_RS01415at 365.039 kb on + strand, within HMPREF1078_RS01415at 365.039 kb on + strand, within HMPREF1078_RS01415at 365.040 kb on - strand, within HMPREF1078_RS01415at 365.041 kb on + strand, within HMPREF1078_RS01415at 365.041 kb on + strand, within HMPREF1078_RS01415at 365.135 kb on + strand, within HMPREF1078_RS01415at 365.136 kb on - strand, within HMPREF1078_RS01415at 365.137 kb on + strand, within HMPREF1078_RS01415at 365.138 kb on - strand, within HMPREF1078_RS01415at 365.138 kb on - strand, within HMPREF1078_RS01415at 365.141 kb on + strand, within HMPREF1078_RS01415at 365.141 kb on + strand, within HMPREF1078_RS01415at 365.141 kb on + strand, within HMPREF1078_RS01415at 365.141 kb on + strand, within HMPREF1078_RS01415at 365.142 kb on - strand, within HMPREF1078_RS01415at 365.142 kb on - strand, within HMPREF1078_RS01415at 365.165 kb on - strand, within HMPREF1078_RS01415at 365.165 kb on - strand, within HMPREF1078_RS01415at 365.249 kb on + strand, within HMPREF1078_RS01415at 365.249 kb on + strand, within HMPREF1078_RS01415at 365.250 kb on - strand, within HMPREF1078_RS01415at 365.250 kb on - strand, within HMPREF1078_RS01415at 365.250 kb on - strand, within HMPREF1078_RS01415at 365.284 kb on + strand, within HMPREF1078_RS01415at 365.285 kb on - strand, within HMPREF1078_RS01415at 365.291 kb on + strand, within HMPREF1078_RS01415at 365.296 kb on + strand, within HMPREF1078_RS01415at 365.296 kb on + strand, within HMPREF1078_RS01415at 365.330 kb on + strand, within HMPREF1078_RS01415at 365.338 kb on - strand, within HMPREF1078_RS01415at 365.465 kb on + strand, within HMPREF1078_RS01415at 365.466 kb on - strand, within HMPREF1078_RS01415at 365.469 kb on - strand, within HMPREF1078_RS01415at 365.477 kb on + strand, within HMPREF1078_RS01415at 365.478 kb on - strand, within HMPREF1078_RS01415at 365.503 kb on + strand, within HMPREF1078_RS01415at 365.504 kb on - strand, within HMPREF1078_RS01415at 365.527 kb on + strandat 365.562 kb on + strandat 365.563 kb on - strandat 365.603 kb on - strandat 365.607 kb on + strandat 365.607 kb on + strandat 365.611 kb on + strandat 365.611 kb on + strandat 365.612 kb on - strandat 365.612 kb on - strandat 365.615 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C)
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362,436 + HMPREF1078_RS01405 0.21 +0.4
362,465 - HMPREF1078_RS01405 0.24 +1.4
362,505 - HMPREF1078_RS01405 0.27 -1.6
362,672 - HMPREF1078_RS01405 0.42 +0.3
362,722 + HMPREF1078_RS01405 0.47 +0.1
362,722 + HMPREF1078_RS01405 0.47 -0.1
362,722 + HMPREF1078_RS01405 0.47 +0.5
362,723 - HMPREF1078_RS01405 0.47 -0.0
362,760 + HMPREF1078_RS01405 0.50 +0.2
362,814 - HMPREF1078_RS01405 0.55 +0.9
362,814 - HMPREF1078_RS01405 0.55 +1.2
362,833 + HMPREF1078_RS01405 0.56 +0.3
362,834 - HMPREF1078_RS01405 0.57 +1.7
362,836 - HMPREF1078_RS01405 0.57 -1.0
362,843 + HMPREF1078_RS01405 0.57 -0.8
362,844 - HMPREF1078_RS01405 0.57 -0.2
362,899 - HMPREF1078_RS01405 0.62 -2.5
362,945 + HMPREF1078_RS01405 0.66 +2.1
362,946 - HMPREF1078_RS01405 0.66 +0.4
362,960 + HMPREF1078_RS01405 0.68 -0.5
362,961 - HMPREF1078_RS01405 0.68 +0.8
363,014 + HMPREF1078_RS01405 0.73 -0.8
363,015 - HMPREF1078_RS01405 0.73 -0.2
363,077 - HMPREF1078_RS01405 0.78 +0.1
363,093 + HMPREF1078_RS01405 0.79 -1.2
363,130 + HMPREF1078_RS01405 0.83 -1.1
363,154 + HMPREF1078_RS01405 0.85 +0.5
363,155 - HMPREF1078_RS01405 0.85 -2.6
363,155 - HMPREF1078_RS01405 0.85 -2.2
363,156 + HMPREF1078_RS01405 0.85 +0.2
363,156 + HMPREF1078_RS01405 0.85 -0.4
363,156 + HMPREF1078_RS01405 0.85 +1.3
363,157 - HMPREF1078_RS01405 0.85 -1.3
363,157 - HMPREF1078_RS01405 0.85 -2.9
363,157 - HMPREF1078_RS01405 0.85 -1.2
363,187 - HMPREF1078_RS01405 0.88 -0.2
363,187 - HMPREF1078_RS01405 0.88 -0.3
363,220 + -0.9
363,221 - -0.7
363,222 + -1.1
363,223 - +2.6
363,270 + +1.0
363,270 + +0.6
363,271 - -1.2
363,271 - -1.1
363,279 - +1.0
363,295 + -1.4
363,298 - +0.7
363,309 - -2.8
363,333 - +1.6
363,339 + -0.6
363,339 + +0.8
363,340 - -0.6
363,353 - -0.9
363,381 - -0.1
363,388 - -3.7
363,388 - -1.9
363,420 + -1.9
363,421 - +0.6
363,421 - -2.5
363,523 + HMPREF1078_RS01410 0.10 -0.8
363,524 - HMPREF1078_RS01410 0.10 +0.2
363,524 - HMPREF1078_RS01410 0.10 -0.3
363,524 - HMPREF1078_RS01410 0.10 +1.6
363,548 - HMPREF1078_RS01410 0.12 -0.9
363,713 + HMPREF1078_RS01410 0.26 -2.1
363,750 - HMPREF1078_RS01410 0.29 +1.0
363,801 + HMPREF1078_RS01410 0.33 -1.1
363,801 + HMPREF1078_RS01410 0.33 -0.3
363,842 + HMPREF1078_RS01410 0.36 +0.7
363,842 + HMPREF1078_RS01410 0.36 +0.4
363,843 - HMPREF1078_RS01410 0.36 +1.1
363,891 + HMPREF1078_RS01410 0.40 -3.0
363,892 - HMPREF1078_RS01410 0.40 -0.5
363,984 - HMPREF1078_RS01410 0.48 -1.7
363,985 + HMPREF1078_RS01410 0.48 -0.6
363,985 + HMPREF1078_RS01410 0.48 -1.5
363,985 + HMPREF1078_RS01410 0.48 -2.9
363,985 + HMPREF1078_RS01410 0.48 -0.9
363,985 + HMPREF1078_RS01410 0.48 -4.4
363,985 + HMPREF1078_RS01410 0.48 -2.1
363,986 + HMPREF1078_RS01410 0.48 -0.2
364,015 + HMPREF1078_RS01410 0.50 -1.3
364,037 + HMPREF1078_RS01410 0.52 -0.7
364,044 - HMPREF1078_RS01410 0.53 -0.9
364,174 + HMPREF1078_RS01410 0.63 -2.0
364,251 + HMPREF1078_RS01410 0.70 -1.5
364,252 - HMPREF1078_RS01410 0.70 -2.9
364,341 - HMPREF1078_RS01410 0.77 +0.2
364,418 - HMPREF1078_RS01410 0.83 +0.5
364,592 - -1.1
364,617 - -1.0
364,633 - +0.3
364,634 + -0.7
364,635 - -0.2
364,635 - -1.5
364,635 - +0.6
364,641 + -3.5
364,641 + -0.6
364,642 - -0.9
364,660 - +1.4
364,742 + HMPREF1078_RS01415 0.12 -0.9
364,742 + HMPREF1078_RS01415 0.12 -2.5
364,743 - HMPREF1078_RS01415 0.12 -1.9
364,766 + HMPREF1078_RS01415 0.15 -2.0
364,774 + HMPREF1078_RS01415 0.16 -3.3
364,774 + HMPREF1078_RS01415 0.16 -2.3
364,775 - HMPREF1078_RS01415 0.16 -2.5
364,778 + HMPREF1078_RS01415 0.16 +0.6
364,808 + HMPREF1078_RS01415 0.19 +1.8
364,808 + HMPREF1078_RS01415 0.19 -1.4
364,809 - HMPREF1078_RS01415 0.19 +0.9
364,823 + HMPREF1078_RS01415 0.20 +1.3
364,931 - HMPREF1078_RS01415 0.31 -1.0
364,931 - HMPREF1078_RS01415 0.31 +0.6
364,939 + HMPREF1078_RS01415 0.32 -1.1
364,940 - HMPREF1078_RS01415 0.32 -1.6
364,995 + HMPREF1078_RS01415 0.38 +0.6
364,996 - HMPREF1078_RS01415 0.38 +0.4
364,996 - HMPREF1078_RS01415 0.38 -0.3
365,039 + HMPREF1078_RS01415 0.42 +2.0
365,039 + HMPREF1078_RS01415 0.42 -0.8
365,039 + HMPREF1078_RS01415 0.42 +1.1
365,039 + HMPREF1078_RS01415 0.42 -1.7
365,039 + HMPREF1078_RS01415 0.42 +0.2
365,040 - HMPREF1078_RS01415 0.42 -0.0
365,041 + HMPREF1078_RS01415 0.42 -1.9
365,041 + HMPREF1078_RS01415 0.42 -0.6
365,135 + HMPREF1078_RS01415 0.52 +0.6
365,136 - HMPREF1078_RS01415 0.52 +0.0
365,137 + HMPREF1078_RS01415 0.52 +0.0
365,138 - HMPREF1078_RS01415 0.52 -1.1
365,138 - HMPREF1078_RS01415 0.52 -0.0
365,141 + HMPREF1078_RS01415 0.52 -3.0
365,141 + HMPREF1078_RS01415 0.52 -2.6
365,141 + HMPREF1078_RS01415 0.52 -2.5
365,141 + HMPREF1078_RS01415 0.52 +1.1
365,142 - HMPREF1078_RS01415 0.52 +1.6
365,142 - HMPREF1078_RS01415 0.52 -1.7
365,165 - HMPREF1078_RS01415 0.55 +0.3
365,165 - HMPREF1078_RS01415 0.55 -1.0
365,249 + HMPREF1078_RS01415 0.63 -0.7
365,249 + HMPREF1078_RS01415 0.63 +1.6
365,250 - HMPREF1078_RS01415 0.63 +0.8
365,250 - HMPREF1078_RS01415 0.63 +0.9
365,250 - HMPREF1078_RS01415 0.63 -0.6
365,284 + HMPREF1078_RS01415 0.67 -0.6
365,285 - HMPREF1078_RS01415 0.67 +1.0
365,291 + HMPREF1078_RS01415 0.67 +0.8
365,296 + HMPREF1078_RS01415 0.68 -1.0
365,296 + HMPREF1078_RS01415 0.68 -0.7
365,330 + HMPREF1078_RS01415 0.71 +1.3
365,338 - HMPREF1078_RS01415 0.72 -1.4
365,465 + HMPREF1078_RS01415 0.85 -3.9
365,466 - HMPREF1078_RS01415 0.85 -1.1
365,469 - HMPREF1078_RS01415 0.85 -1.8
365,477 + HMPREF1078_RS01415 0.86 -0.6
365,478 - HMPREF1078_RS01415 0.86 +0.4
365,503 + HMPREF1078_RS01415 0.88 -0.6
365,504 - HMPREF1078_RS01415 0.89 -0.4
365,527 + +0.3
365,562 + +0.1
365,563 - -1.3
365,603 - +0.4
365,607 + +0.6
365,607 + -1.3
365,611 + -0.0
365,611 + -2.1
365,612 - -1.4
365,612 - -1.0
365,615 + -0.1

Or see this region's nucleotide sequence