Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01170 and HMPREF1078_RS01175 overlap by 4 nucleotides HMPREF1078_RS01175 and HMPREF1078_RS01180 overlap by 17 nucleotides HMPREF1078_RS01180 and HMPREF1078_RS01185 overlap by 79 nucleotides HMPREF1078_RS01185 and HMPREF1078_RS01190 are separated by 33 nucleotides
HMPREF1078_RS01170: HMPREF1078_RS01170 - carbon-nitrogen hydrolase, at 292,548 to 293,423
_RS01170
HMPREF1078_RS01175: HMPREF1078_RS01175 - aminodeoxychorismate synthase component I, at 293,420 to 294,421
_RS01175
HMPREF1078_RS01180: HMPREF1078_RS01180 - aminotransferase class IV, at 294,405 to 294,995
_RS01180
HMPREF1078_RS01185: HMPREF1078_RS01185 - murein L,D-transpeptidase catalytic domain family protein, at 294,917 to 295,663
_RS01185
HMPREF1078_RS01190: HMPREF1078_RS01190 - L,D-transpeptidase, at 295,697 to 296,713
_RS01190
Position (kb) 294
295 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 293.420 kb on - strand at 293.429 kb on + strand at 293.440 kb on - strand at 293.440 kb on - strand at 293.456 kb on - strand at 293.505 kb on - strand at 293.564 kb on + strand, within HMPREF1078_RS01175 at 293.565 kb on - strand, within HMPREF1078_RS01175 at 293.690 kb on - strand, within HMPREF1078_RS01175 at 293.705 kb on - strand, within HMPREF1078_RS01175 at 293.705 kb on - strand, within HMPREF1078_RS01175 at 293.705 kb on - strand, within HMPREF1078_RS01175 at 293.806 kb on + strand, within HMPREF1078_RS01175 at 293.806 kb on + strand, within HMPREF1078_RS01175 at 293.807 kb on - strand, within HMPREF1078_RS01175 at 293.807 kb on - strand, within HMPREF1078_RS01175 at 293.876 kb on - strand, within HMPREF1078_RS01175 at 293.911 kb on + strand, within HMPREF1078_RS01175 at 293.911 kb on + strand, within HMPREF1078_RS01175 at 293.971 kb on + strand, within HMPREF1078_RS01175 at 294.004 kb on + strand, within HMPREF1078_RS01175 at 294.041 kb on + strand, within HMPREF1078_RS01175 at 294.045 kb on + strand, within HMPREF1078_RS01175 at 294.046 kb on - strand, within HMPREF1078_RS01175 at 294.046 kb on - strand, within HMPREF1078_RS01175 at 294.239 kb on + strand, within HMPREF1078_RS01175 at 294.239 kb on + strand, within HMPREF1078_RS01175 at 294.257 kb on + strand, within HMPREF1078_RS01175 at 294.271 kb on + strand, within HMPREF1078_RS01175 at 294.380 kb on + strand at 294.383 kb on - strand at 294.402 kb on + strand at 294.402 kb on + strand at 294.403 kb on - strand at 294.404 kb on + strand at 294.404 kb on + strand at 294.405 kb on - strand at 294.412 kb on + strand at 294.413 kb on - strand at 294.457 kb on + strand at 294.458 kb on - strand at 294.458 kb on - strand at 294.458 kb on - strand at 294.458 kb on - strand at 294.459 kb on - strand at 294.462 kb on + strand at 294.502 kb on + strand, within HMPREF1078_RS01180 at 294.502 kb on + strand, within HMPREF1078_RS01180 at 294.502 kb on + strand, within HMPREF1078_RS01180 at 294.503 kb on - strand, within HMPREF1078_RS01180 at 294.535 kb on - strand, within HMPREF1078_RS01180 at 294.680 kb on + strand, within HMPREF1078_RS01180 at 294.779 kb on + strand, within HMPREF1078_RS01180 at 294.980 kb on + strand at 295.002 kb on + strand, within HMPREF1078_RS01185 at 295.002 kb on + strand, within HMPREF1078_RS01185 at 295.003 kb on - strand, within HMPREF1078_RS01185 at 295.020 kb on + strand, within HMPREF1078_RS01185 at 295.020 kb on + strand, within HMPREF1078_RS01185 at 295.021 kb on - strand, within HMPREF1078_RS01185 at 295.021 kb on - strand, within HMPREF1078_RS01185 at 295.026 kb on + strand, within HMPREF1078_RS01185 at 295.027 kb on - strand, within HMPREF1078_RS01185 at 295.027 kb on - strand, within HMPREF1078_RS01185 at 295.055 kb on - strand, within HMPREF1078_RS01185 at 295.110 kb on - strand, within HMPREF1078_RS01185 at 295.164 kb on - strand, within HMPREF1078_RS01185 at 295.221 kb on - strand, within HMPREF1078_RS01185 at 295.221 kb on - strand, within HMPREF1078_RS01185 at 295.245 kb on + strand, within HMPREF1078_RS01185 at 295.245 kb on + strand, within HMPREF1078_RS01185 at 295.318 kb on - strand, within HMPREF1078_RS01185 at 295.372 kb on + strand, within HMPREF1078_RS01185 at 295.392 kb on + strand, within HMPREF1078_RS01185 at 295.393 kb on - strand, within HMPREF1078_RS01185 at 295.435 kb on + strand, within HMPREF1078_RS01185 at 295.441 kb on + strand, within HMPREF1078_RS01185 at 295.498 kb on + strand, within HMPREF1078_RS01185 at 295.499 kb on - strand, within HMPREF1078_RS01185 at 295.500 kb on + strand, within HMPREF1078_RS01185 at 295.501 kb on - strand, within HMPREF1078_RS01185 at 295.510 kb on + strand, within HMPREF1078_RS01185 at 295.510 kb on + strand, within HMPREF1078_RS01185 at 295.510 kb on + strand, within HMPREF1078_RS01185 at 295.510 kb on + strand, within HMPREF1078_RS01185 at 295.510 kb on + strand, within HMPREF1078_RS01185 at 295.511 kb on - strand, within HMPREF1078_RS01185 at 295.511 kb on - strand, within HMPREF1078_RS01185 at 295.511 kb on - strand, within HMPREF1078_RS01185 at 295.511 kb on - strand, within HMPREF1078_RS01185 at 295.513 kb on + strand, within HMPREF1078_RS01185 at 295.525 kb on + strand, within HMPREF1078_RS01185 at 295.533 kb on + strand, within HMPREF1078_RS01185 at 295.534 kb on - strand, within HMPREF1078_RS01185 at 295.547 kb on + strand, within HMPREF1078_RS01185 at 295.642 kb on - strand at 295.652 kb on - strand at 295.663 kb on + strand at 295.664 kb on - strand at 295.664 kb on - strand at 295.664 kb on - strand at 295.664 kb on - strand at 295.717 kb on + strand at 295.717 kb on + strand at 295.718 kb on - strand at 295.727 kb on + strand at 295.783 kb on + strand at 295.783 kb on + strand at 295.784 kb on - strand at 295.784 kb on - strand at 295.784 kb on - strand at 295.864 kb on + strand, within HMPREF1078_RS01190 at 295.865 kb on - strand, within HMPREF1078_RS01190 at 295.867 kb on - strand, within HMPREF1078_RS01190 at 295.867 kb on - strand, within HMPREF1078_RS01190 at 295.867 kb on - strand, within HMPREF1078_RS01190 at 295.893 kb on + strand, within HMPREF1078_RS01190 at 295.970 kb on + strand, within HMPREF1078_RS01190 at 295.970 kb on + strand, within HMPREF1078_RS01190 at 295.970 kb on + strand, within HMPREF1078_RS01190 at 295.971 kb on - strand, within HMPREF1078_RS01190 at 295.971 kb on - strand, within HMPREF1078_RS01190
Per-strain Table
Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C) remove 293,420 - +1.0 293,429 + +0.2 293,440 - -0.1 293,440 - +0.2 293,456 - -1.9 293,505 - -3.1 293,564 + HMPREF1078_RS01175 0.14 -1.4 293,565 - HMPREF1078_RS01175 0.14 -0.9 293,690 - HMPREF1078_RS01175 0.27 +1.3 293,705 - HMPREF1078_RS01175 0.28 +1.2 293,705 - HMPREF1078_RS01175 0.28 -1.0 293,705 - HMPREF1078_RS01175 0.28 -0.1 293,806 + HMPREF1078_RS01175 0.39 +1.9 293,806 + HMPREF1078_RS01175 0.39 -2.1 293,807 - HMPREF1078_RS01175 0.39 -0.5 293,807 - HMPREF1078_RS01175 0.39 -0.7 293,876 - HMPREF1078_RS01175 0.46 +0.4 293,911 + HMPREF1078_RS01175 0.49 -1.9 293,911 + HMPREF1078_RS01175 0.49 +0.2 293,971 + HMPREF1078_RS01175 0.55 -2.9 294,004 + HMPREF1078_RS01175 0.58 +0.4 294,041 + HMPREF1078_RS01175 0.62 -0.8 294,045 + HMPREF1078_RS01175 0.62 -1.5 294,046 - HMPREF1078_RS01175 0.62 -1.4 294,046 - HMPREF1078_RS01175 0.62 -0.9 294,239 + HMPREF1078_RS01175 0.82 +1.1 294,239 + HMPREF1078_RS01175 0.82 -0.9 294,257 + HMPREF1078_RS01175 0.84 +1.1 294,271 + HMPREF1078_RS01175 0.85 -0.2 294,380 + +2.3 294,383 - -1.1 294,402 + +0.9 294,402 + +0.7 294,403 - -2.1 294,404 + -0.9 294,404 + -0.7 294,405 - +1.7 294,412 + -0.2 294,413 - -0.1 294,457 + +1.4 294,458 - -2.2 294,458 - +1.0 294,458 - +0.4 294,458 - +1.1 294,459 - +0.3 294,462 + -1.1 294,502 + HMPREF1078_RS01180 0.16 -1.4 294,502 + HMPREF1078_RS01180 0.16 +0.1 294,502 + HMPREF1078_RS01180 0.16 -1.2 294,503 - HMPREF1078_RS01180 0.17 -1.2 294,535 - HMPREF1078_RS01180 0.22 -0.0 294,680 + HMPREF1078_RS01180 0.47 +0.0 294,779 + HMPREF1078_RS01180 0.63 +0.4 294,980 + +0.6 295,002 + HMPREF1078_RS01185 0.11 +0.1 295,002 + HMPREF1078_RS01185 0.11 -0.5 295,003 - HMPREF1078_RS01185 0.12 +1.3 295,020 + HMPREF1078_RS01185 0.14 -0.6 295,020 + HMPREF1078_RS01185 0.14 -1.8 295,021 - HMPREF1078_RS01185 0.14 +0.2 295,021 - HMPREF1078_RS01185 0.14 +0.2 295,026 + HMPREF1078_RS01185 0.15 -0.9 295,027 - HMPREF1078_RS01185 0.15 -1.0 295,027 - HMPREF1078_RS01185 0.15 +0.3 295,055 - HMPREF1078_RS01185 0.18 -1.9 295,110 - HMPREF1078_RS01185 0.26 +1.0 295,164 - HMPREF1078_RS01185 0.33 -2.6 295,221 - HMPREF1078_RS01185 0.41 -1.1 295,221 - HMPREF1078_RS01185 0.41 +1.4 295,245 + HMPREF1078_RS01185 0.44 -0.1 295,245 + HMPREF1078_RS01185 0.44 -0.5 295,318 - HMPREF1078_RS01185 0.54 +2.1 295,372 + HMPREF1078_RS01185 0.61 +0.2 295,392 + HMPREF1078_RS01185 0.64 -1.2 295,393 - HMPREF1078_RS01185 0.64 -0.8 295,435 + HMPREF1078_RS01185 0.69 +0.7 295,441 + HMPREF1078_RS01185 0.70 -1.7 295,498 + HMPREF1078_RS01185 0.78 +0.6 295,499 - HMPREF1078_RS01185 0.78 -0.0 295,500 + HMPREF1078_RS01185 0.78 -0.9 295,501 - HMPREF1078_RS01185 0.78 +0.1 295,510 + HMPREF1078_RS01185 0.79 +0.1 295,510 + HMPREF1078_RS01185 0.79 -1.1 295,510 + HMPREF1078_RS01185 0.79 +0.7 295,510 + HMPREF1078_RS01185 0.79 +2.4 295,510 + HMPREF1078_RS01185 0.79 +0.3 295,511 - HMPREF1078_RS01185 0.80 -1.9 295,511 - HMPREF1078_RS01185 0.80 -0.0 295,511 - HMPREF1078_RS01185 0.80 +0.3 295,511 - HMPREF1078_RS01185 0.80 -0.1 295,513 + HMPREF1078_RS01185 0.80 -0.4 295,525 + HMPREF1078_RS01185 0.81 -0.9 295,533 + HMPREF1078_RS01185 0.82 -2.0 295,534 - HMPREF1078_RS01185 0.83 -0.6 295,547 + HMPREF1078_RS01185 0.84 -0.1 295,642 - -3.5 295,652 - -1.0 295,663 + +1.4 295,664 - -0.7 295,664 - -0.5 295,664 - -2.0 295,664 - +1.9 295,717 + +1.5 295,717 + +0.3 295,718 - -1.7 295,727 + +0.7 295,783 + +0.0 295,783 + -0.8 295,784 - -2.2 295,784 - -2.8 295,784 - +0.8 295,864 + HMPREF1078_RS01190 0.16 -1.0 295,865 - HMPREF1078_RS01190 0.17 +1.3 295,867 - HMPREF1078_RS01190 0.17 -1.0 295,867 - HMPREF1078_RS01190 0.17 -0.2 295,867 - HMPREF1078_RS01190 0.17 +1.0 295,893 + HMPREF1078_RS01190 0.19 -0.4 295,970 + HMPREF1078_RS01190 0.27 -0.4 295,970 + HMPREF1078_RS01190 0.27 +0.5 295,970 + HMPREF1078_RS01190 0.27 +1.6 295,971 - HMPREF1078_RS01190 0.27 +0.8 295,971 - HMPREF1078_RS01190 0.27 +0.6
Or see this region's nucleotide sequence