Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01075 and HMPREF1078_RS01080 are separated by 12 nucleotides HMPREF1078_RS01080 and HMPREF1078_RS01085 are separated by 73 nucleotides
HMPREF1078_RS01075: HMPREF1078_RS01075 - LptF/LptG family permease, at 270,706 to 271,791
_RS01075
HMPREF1078_RS01080: HMPREF1078_RS01080 - tRNA guanosine(34) transglycosylase Tgt, at 271,804 to 272,934
_RS01080
HMPREF1078_RS01085: HMPREF1078_RS01085 - 4Fe-4S dicluster domain-containing protein, at 273,008 to 274,597
_RS01085
Position (kb) 271
272
273 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 271.867 kb on - strand at 271.902 kb on - strand at 271.970 kb on - strand, within HMPREF1078_RS01080 at 271.974 kb on - strand, within HMPREF1078_RS01080 at 271.974 kb on - strand, within HMPREF1078_RS01080 at 272.053 kb on - strand, within HMPREF1078_RS01080 at 272.059 kb on - strand, within HMPREF1078_RS01080 at 272.059 kb on - strand, within HMPREF1078_RS01080 at 272.084 kb on - strand, within HMPREF1078_RS01080 at 272.131 kb on - strand, within HMPREF1078_RS01080 at 272.156 kb on - strand, within HMPREF1078_RS01080 at 272.186 kb on - strand, within HMPREF1078_RS01080 at 272.186 kb on - strand, within HMPREF1078_RS01080 at 272.225 kb on - strand, within HMPREF1078_RS01080 at 272.241 kb on - strand, within HMPREF1078_RS01080 at 272.357 kb on - strand, within HMPREF1078_RS01080 at 272.357 kb on - strand, within HMPREF1078_RS01080 at 272.401 kb on - strand, within HMPREF1078_RS01080 at 272.584 kb on - strand, within HMPREF1078_RS01080 at 272.973 kb on - strand at 272.973 kb on - strand at 272.973 kb on - strand at 272.983 kb on - strand at 272.985 kb on + strand at 272.986 kb on - strand at 272.986 kb on - strand at 272.986 kb on - strand at 272.986 kb on - strand at 272.996 kb on - strand at 272.997 kb on + strand at 272.997 kb on + strand at 272.997 kb on + strand at 272.998 kb on - strand at 272.999 kb on + strand at 273.036 kb on + strand at 273.210 kb on - strand, within HMPREF1078_RS01085 at 273.263 kb on - strand, within HMPREF1078_RS01085 at 273.266 kb on - strand, within HMPREF1078_RS01085 at 273.328 kb on + strand, within HMPREF1078_RS01085 at 273.359 kb on + strand, within HMPREF1078_RS01085 at 273.360 kb on - strand, within HMPREF1078_RS01085 at 273.360 kb on - strand, within HMPREF1078_RS01085 at 273.385 kb on - strand, within HMPREF1078_RS01085 at 273.385 kb on - strand, within HMPREF1078_RS01085 at 273.394 kb on - strand, within HMPREF1078_RS01085 at 273.404 kb on - strand, within HMPREF1078_RS01085 at 273.427 kb on + strand, within HMPREF1078_RS01085 at 273.428 kb on - strand, within HMPREF1078_RS01085 at 273.430 kb on - strand, within HMPREF1078_RS01085 at 273.430 kb on - strand, within HMPREF1078_RS01085 at 273.491 kb on + strand, within HMPREF1078_RS01085 at 273.492 kb on - strand, within HMPREF1078_RS01085 at 273.492 kb on - strand, within HMPREF1078_RS01085 at 273.492 kb on - strand, within HMPREF1078_RS01085 at 273.492 kb on - strand, within HMPREF1078_RS01085 at 273.506 kb on - strand, within HMPREF1078_RS01085 at 273.535 kb on + strand, within HMPREF1078_RS01085 at 273.699 kb on + strand, within HMPREF1078_RS01085 at 273.701 kb on + strand, within HMPREF1078_RS01085 at 273.702 kb on - strand, within HMPREF1078_RS01085 at 273.711 kb on - strand, within HMPREF1078_RS01085 at 273.812 kb on + strand, within HMPREF1078_RS01085 at 273.812 kb on + strand, within HMPREF1078_RS01085 at 273.812 kb on + strand, within HMPREF1078_RS01085 at 273.827 kb on - strand, within HMPREF1078_RS01085 at 273.872 kb on - strand, within HMPREF1078_RS01085 at 273.920 kb on - strand, within HMPREF1078_RS01085 at 273.920 kb on - strand, within HMPREF1078_RS01085
Per-strain Table
Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C) remove 271,867 - -3.5 271,902 - +0.0 271,970 - HMPREF1078_RS01080 0.15 -0.5 271,974 - HMPREF1078_RS01080 0.15 -1.3 271,974 - HMPREF1078_RS01080 0.15 -3.3 272,053 - HMPREF1078_RS01080 0.22 -3.6 272,059 - HMPREF1078_RS01080 0.23 -1.2 272,059 - HMPREF1078_RS01080 0.23 -1.6 272,084 - HMPREF1078_RS01080 0.25 +1.4 272,131 - HMPREF1078_RS01080 0.29 +1.5 272,156 - HMPREF1078_RS01080 0.31 +0.4 272,186 - HMPREF1078_RS01080 0.34 +1.6 272,186 - HMPREF1078_RS01080 0.34 +0.7 272,225 - HMPREF1078_RS01080 0.37 -1.6 272,241 - HMPREF1078_RS01080 0.39 -1.2 272,357 - HMPREF1078_RS01080 0.49 -1.1 272,357 - HMPREF1078_RS01080 0.49 -3.3 272,401 - HMPREF1078_RS01080 0.53 +0.6 272,584 - HMPREF1078_RS01080 0.69 -0.4 272,973 - -0.7 272,973 - -0.0 272,973 - +0.6 272,983 - +0.9 272,985 + +0.1 272,986 - -2.0 272,986 - +0.6 272,986 - +1.4 272,986 - +1.6 272,996 - +0.1 272,997 + +1.7 272,997 + -2.6 272,997 + -0.7 272,998 - +1.1 272,999 + +2.3 273,036 + +1.0 273,210 - HMPREF1078_RS01085 0.13 +0.0 273,263 - HMPREF1078_RS01085 0.16 +0.4 273,266 - HMPREF1078_RS01085 0.16 +0.5 273,328 + HMPREF1078_RS01085 0.20 +1.3 273,359 + HMPREF1078_RS01085 0.22 +0.7 273,360 - HMPREF1078_RS01085 0.22 -0.2 273,360 - HMPREF1078_RS01085 0.22 -0.5 273,385 - HMPREF1078_RS01085 0.24 +1.1 273,385 - HMPREF1078_RS01085 0.24 -2.1 273,394 - HMPREF1078_RS01085 0.24 -1.4 273,404 - HMPREF1078_RS01085 0.25 -3.1 273,427 + HMPREF1078_RS01085 0.26 -0.3 273,428 - HMPREF1078_RS01085 0.26 +0.1 273,430 - HMPREF1078_RS01085 0.27 +0.8 273,430 - HMPREF1078_RS01085 0.27 +0.8 273,491 + HMPREF1078_RS01085 0.30 -2.6 273,492 - HMPREF1078_RS01085 0.30 +0.9 273,492 - HMPREF1078_RS01085 0.30 -1.2 273,492 - HMPREF1078_RS01085 0.30 +1.8 273,492 - HMPREF1078_RS01085 0.30 +0.5 273,506 - HMPREF1078_RS01085 0.31 -0.8 273,535 + HMPREF1078_RS01085 0.33 +0.2 273,699 + HMPREF1078_RS01085 0.43 -0.2 273,701 + HMPREF1078_RS01085 0.44 -1.4 273,702 - HMPREF1078_RS01085 0.44 -1.7 273,711 - HMPREF1078_RS01085 0.44 +0.1 273,812 + HMPREF1078_RS01085 0.51 -0.7 273,812 + HMPREF1078_RS01085 0.51 -1.2 273,812 + HMPREF1078_RS01085 0.51 +1.8 273,827 - HMPREF1078_RS01085 0.52 -1.6 273,872 - HMPREF1078_RS01085 0.54 +0.5 273,920 - HMPREF1078_RS01085 0.57 +0.2 273,920 - HMPREF1078_RS01085 0.57 -2.4
Or see this region's nucleotide sequence