Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00500

Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Laminarin from Laminaria digitata 2.5 mg/mL (C)
113,396	-		HMPREF1078_RS00490	0.86	-0.2
113,498	-				+1.9
113,529	+				-0.2
113,600	+				-1.1
113,654	-				-1.0
113,655	+				-1.7
113,655	+				+1.6
113,655	+				+1.3
113,656	-				+1.4
113,656	-				-2.1
113,657	+				+0.0
113,657	+				-0.8
113,657	+				-2.2
113,657	+				-1.8
113,658	-				-0.0
113,658	-				-0.7
113,658	-				+0.9
113,658	-				-0.5
113,658	-				+0.5
113,659	+				-2.6
113,659	+				-1.8
113,659	+				+0.6
113,659	+				+2.1
113,660	-				-0.2
113,660	-				-2.1
113,660	-				-0.3
113,680	+				+0.3
113,724	-				-1.8
113,724	-				-0.7
113,725	+				-0.5
113,732	+		HMPREF1078_RS00495	0.10	+1.0
113,774	+		HMPREF1078_RS00495	0.22	-2.8
113,777	+		HMPREF1078_RS00495	0.23	-0.7
113,777	+		HMPREF1078_RS00495	0.23	-3.1
113,777	+		HMPREF1078_RS00495	0.23	-0.4
113,778	-		HMPREF1078_RS00495	0.23	-1.2
113,870	+		HMPREF1078_RS00495	0.49	-2.5
113,870	+		HMPREF1078_RS00495	0.49	+0.9
113,870	+		HMPREF1078_RS00495	0.49	-2.7
113,871	-		HMPREF1078_RS00495	0.49	-0.6
113,884	-		HMPREF1078_RS00495	0.53	-0.4
113,947	+		HMPREF1078_RS00495	0.70	-2.1
113,948	-		HMPREF1078_RS00495	0.71	+1.6
113,948	-		HMPREF1078_RS00495	0.71	-1.4
113,950	-		HMPREF1078_RS00495	0.71	-2.0
113,950	-		HMPREF1078_RS00495	0.71	+1.6
113,960	+		HMPREF1078_RS00495	0.74	+0.6
113,960	+		HMPREF1078_RS00495	0.74	+1.0
113,961	-		HMPREF1078_RS00495	0.74	-0.2
113,961	-		HMPREF1078_RS00495	0.74	-0.5
113,961	-		HMPREF1078_RS00495	0.74	+0.4
113,962	+		HMPREF1078_RS00495	0.75	+0.5
113,962	+		HMPREF1078_RS00495	0.75	-0.5
114,001	+		HMPREF1078_RS00495	0.85	-0.9
114,002	-		HMPREF1078_RS00495	0.86	-1.8
114,002	-		HMPREF1078_RS00495	0.86	+0.9
114,007	-		HMPREF1078_RS00495	0.87	+0.5
114,026	+				-2.9
114,027	-				-2.3
114,027	-				-3.6
114,027	-				-1.2
114,027	-				-0.2
114,044	-				-1.0
114,056	+				-0.8
114,069	+				+0.4
114,073	-				-1.9
114,074	+				-2.1
114,074	+				-1.7
114,075	-				+1.3
114,110	-				+2.1
114,211	+				+0.5
114,301	-				-0.4
114,302	+				+0.1
114,327	-				+0.2
114,404	-				-1.4
114,435	+				+1.0
114,529	+				+1.0
114,529	+				-0.1
114,530	-				-0.7
114,546	+				-0.7
114,547	-				-1.8
114,566	+				-0.4
114,615	+		HMPREF1078_RS00500	0.12	+1.3
114,615	+		HMPREF1078_RS00500	0.12	-0.2
114,616	-		HMPREF1078_RS00500	0.12	+1.2
114,616	-		HMPREF1078_RS00500	0.12	+1.6
114,710	-		HMPREF1078_RS00500	0.15	-0.9
114,749	-		HMPREF1078_RS00500	0.17	+0.3
114,774	+		HMPREF1078_RS00500	0.18	+1.2
114,774	+		HMPREF1078_RS00500	0.18	-1.0
114,774	+		HMPREF1078_RS00500	0.18	+0.3
114,774	+		HMPREF1078_RS00500	0.18	-0.7
114,774	+		HMPREF1078_RS00500	0.18	-1.6
114,774	+		HMPREF1078_RS00500	0.18	-2.2
114,774	+		HMPREF1078_RS00500	0.18	-0.8
114,774	+		HMPREF1078_RS00500	0.18	+0.5
114,774	+		HMPREF1078_RS00500	0.18	+0.3
114,774	+		HMPREF1078_RS00500	0.18	+1.2
114,774	+		HMPREF1078_RS00500	0.18	-0.5
114,775	-		HMPREF1078_RS00500	0.18	-2.9
114,775	-		HMPREF1078_RS00500	0.18	+0.2
114,775	-		HMPREF1078_RS00500	0.18	-1.8
114,775	-		HMPREF1078_RS00500	0.18	+1.1
114,775	-		HMPREF1078_RS00500	0.18	+0.7
114,776	-		HMPREF1078_RS00500	0.18	-0.4
114,792	+		HMPREF1078_RS00500	0.19	+0.6
114,792	+		HMPREF1078_RS00500	0.19	+0.1
114,793	-		HMPREF1078_RS00500	0.19	+0.3
114,893	+		HMPREF1078_RS00500	0.23	-0.0
114,968	+		HMPREF1078_RS00500	0.25	-0.5
114,969	-		HMPREF1078_RS00500	0.25	-1.9
115,056	-		HMPREF1078_RS00500	0.29	-0.3
115,145	+		HMPREF1078_RS00500	0.32	-3.3
115,145	+		HMPREF1078_RS00500	0.32	-2.9
115,257	+		HMPREF1078_RS00500	0.37	-1.5
115,257	+		HMPREF1078_RS00500	0.37	+0.4
115,258	-		HMPREF1078_RS00500	0.37	+0.3
115,267	-		HMPREF1078_RS00500	0.37	-1.3
115,278	+		HMPREF1078_RS00500	0.37	+1.4
115,280	+		HMPREF1078_RS00500	0.38	-3.7
115,311	-		HMPREF1078_RS00500	0.39	-1.9
115,440	+		HMPREF1078_RS00500	0.44	-1.1
115,703	+		HMPREF1078_RS00500	0.54	-2.9
115,703	+		HMPREF1078_RS00500	0.54	-1.1
115,703	+		HMPREF1078_RS00500	0.54	-0.3
115,921	+		HMPREF1078_RS00500	0.62	-0.6
115,922	-		HMPREF1078_RS00500	0.62	-2.3
115,922	-		HMPREF1078_RS00500	0.62	-0.7
116,039	+		HMPREF1078_RS00500	0.67	-1.4
116,039	+		HMPREF1078_RS00500	0.67	-3.0
116,040	-		HMPREF1078_RS00500	0.67	-1.4
116,105	+		HMPREF1078_RS00500	0.69	-0.3
116,118	-		HMPREF1078_RS00500	0.70	-3.0
116,184	-		HMPREF1078_RS00500	0.72	+0.3
116,202	-		HMPREF1078_RS00500	0.73	+0.7
116,260	-		HMPREF1078_RS00500	0.75	-2.4
116,359	+		HMPREF1078_RS00500	0.79	-1.8
116,359	+		HMPREF1078_RS00500	0.79	-1.5
116,360	-		HMPREF1078_RS00500	0.79	-0.5
116,360	-		HMPREF1078_RS00500	0.79	-0.5
116,360	-		HMPREF1078_RS00500	0.79	-0.5
116,409	-		HMPREF1078_RS00500	0.81	+0.7
116,435	+		HMPREF1078_RS00500	0.82	+0.3
116,444	+		HMPREF1078_RS00500	0.82	+0.3
116,447	+		HMPREF1078_RS00500	0.83	+0.1
116,447	+		HMPREF1078_RS00500	0.83	+0.6
116,496	-		HMPREF1078_RS00500	0.84	-3.0
116,709	-				-0.8
116,709	-				-2.5
116,793	+				-0.0
116,794	-				+0.6
116,917	+				-0.5
116,917	+				+1.0
116,917	+				-0.4
116,918	-				+0.9
116,919	+				-0.3
116,919	+				-0.3
116,926	-				-2.1
116,926	-				-1.9
116,983	+				-0.4
116,983	+				-2.1
117,005	+				-1.2
117,006	-				+0.6
117,325	-		HMPREF1078_RS00505	0.19	+1.6
117,326	+		HMPREF1078_RS00505	0.19	+0.6
117,434	+		HMPREF1078_RS00505	0.25	-0.2
117,596	-		HMPREF1078_RS00505	0.35	+0.1
117,674	+		HMPREF1078_RS00505	0.39	-0.5
117,680	-		HMPREF1078_RS00505	0.39	+0.3
117,708	+		HMPREF1078_RS00505	0.41	-1.2