Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10690 and HMPREF1078_RS10695 are separated by 23 nucleotides HMPREF1078_RS10695 and HMPREF1078_RS10700 are separated by 324 nucleotides
HMPREF1078_RS10690: HMPREF1078_RS10690 - lysophospholipid acyltransferase family protein, at 44,331 to 45,239
_RS10690
HMPREF1078_RS10695: HMPREF1078_RS10695 - glycosyltransferase family 2 protein, at 45,263 to 46,327
_RS10695
HMPREF1078_RS10700: HMPREF1078_RS10700 - MarC family protein, at 46,652 to 47,296
_RS10700
Position (kb) 45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 44.291 kb on + strand at 44.291 kb on + strand at 45.200 kb on + strand at 45.262 kb on + strand at 46.323 kb on + strand at 46.324 kb on - strand at 46.360 kb on - strand at 46.360 kb on - strand at 46.382 kb on - strand at 46.383 kb on + strand at 46.414 kb on - strand at 46.476 kb on - strand at 46.492 kb on + strand at 46.542 kb on - strand at 46.548 kb on + strand at 46.556 kb on + strand at 46.557 kb on - strand at 46.560 kb on - strand at 46.653 kb on + strand at 46.783 kb on - strand, within HMPREF1078_RS10700 at 46.819 kb on - strand, within HMPREF1078_RS10700 at 46.971 kb on + strand, within HMPREF1078_RS10700 at 46.971 kb on + strand, within HMPREF1078_RS10700 at 46.971 kb on + strand, within HMPREF1078_RS10700 at 46.971 kb on + strand, within HMPREF1078_RS10700 at 46.972 kb on - strand, within HMPREF1078_RS10700 at 46.972 kb on - strand, within HMPREF1078_RS10700 at 46.972 kb on - strand, within HMPREF1078_RS10700 at 46.972 kb on - strand, within HMPREF1078_RS10700 at 47.050 kb on - strand, within HMPREF1078_RS10700 at 47.051 kb on - strand, within HMPREF1078_RS10700 at 47.148 kb on - strand, within HMPREF1078_RS10700 at 47.249 kb on - strand at 47.260 kb on + strand at 47.299 kb on + strand at 47.299 kb on + strand at 47.300 kb on - strand at 47.300 kb on - strand at 47.300 kb on - strand at 47.303 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C) remove 44,291 + -0.9 44,291 + -0.2 45,200 + -0.3 45,262 + +0.7 46,323 + +0.5 46,324 - +0.4 46,360 - +0.5 46,360 - +0.1 46,382 - -0.8 46,383 + +0.2 46,414 - -0.9 46,476 - +0.7 46,492 + -1.9 46,542 - +0.5 46,548 + -2.9 46,556 + -0.1 46,557 - -1.7 46,560 - +0.7 46,653 + +1.3 46,783 - HMPREF1078_RS10700 0.20 +0.5 46,819 - HMPREF1078_RS10700 0.26 +0.7 46,971 + HMPREF1078_RS10700 0.49 +0.0 46,971 + HMPREF1078_RS10700 0.49 -0.8 46,971 + HMPREF1078_RS10700 0.49 +1.1 46,971 + HMPREF1078_RS10700 0.49 -0.0 46,972 - HMPREF1078_RS10700 0.50 -0.7 46,972 - HMPREF1078_RS10700 0.50 -3.2 46,972 - HMPREF1078_RS10700 0.50 -0.2 46,972 - HMPREF1078_RS10700 0.50 +0.8 47,050 - HMPREF1078_RS10700 0.62 -0.6 47,051 - HMPREF1078_RS10700 0.62 -0.7 47,148 - HMPREF1078_RS10700 0.77 -0.5 47,249 - +1.3 47,260 + +0.7 47,299 + -0.3 47,299 + -0.6 47,300 - +0.0 47,300 - -2.1 47,300 - +0.6 47,303 - -2.3
Or see this region's nucleotide sequence