Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS09450

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS09445 and HMPREF1078_RS09450 are separated by 158 nucleotidesHMPREF1078_RS09450 and HMPREF1078_RS09455 are separated by 48 nucleotides HMPREF1078_RS09445: HMPREF1078_RS09445 - peptide-methionine (R)-S-oxide reductase MsrB, at 472,103 to 473,083 _RS09445 HMPREF1078_RS09450: HMPREF1078_RS09450 - pyridoxamine kinase, at 473,242 to 474,102 _RS09450 HMPREF1078_RS09455: HMPREF1078_RS09455 - 2-dehydropantoate 2-reductase, at 474,151 to 475,089 _RS09455 Position (kb) 473 474 475Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 472.269 kb on - strand, within HMPREF1078_RS09445at 472.269 kb on - strand, within HMPREF1078_RS09445at 472.372 kb on + strand, within HMPREF1078_RS09445at 472.372 kb on + strand, within HMPREF1078_RS09445at 472.378 kb on + strand, within HMPREF1078_RS09445at 472.382 kb on + strand, within HMPREF1078_RS09445at 472.406 kb on - strand, within HMPREF1078_RS09445at 472.409 kb on - strand, within HMPREF1078_RS09445at 472.409 kb on - strand, within HMPREF1078_RS09445at 472.416 kb on + strand, within HMPREF1078_RS09445at 472.417 kb on - strand, within HMPREF1078_RS09445at 472.429 kb on + strand, within HMPREF1078_RS09445at 472.429 kb on + strand, within HMPREF1078_RS09445at 472.430 kb on - strand, within HMPREF1078_RS09445at 472.444 kb on - strand, within HMPREF1078_RS09445at 472.444 kb on - strand, within HMPREF1078_RS09445at 472.491 kb on + strand, within HMPREF1078_RS09445at 472.492 kb on - strand, within HMPREF1078_RS09445at 472.492 kb on - strand, within HMPREF1078_RS09445at 472.496 kb on + strand, within HMPREF1078_RS09445at 472.496 kb on + strand, within HMPREF1078_RS09445at 472.496 kb on + strand, within HMPREF1078_RS09445at 472.496 kb on + strand, within HMPREF1078_RS09445at 472.496 kb on + strand, within HMPREF1078_RS09445at 472.496 kb on + strand, within HMPREF1078_RS09445at 472.496 kb on + strand, within HMPREF1078_RS09445at 472.496 kb on + strand, within HMPREF1078_RS09445at 472.496 kb on + strand, within HMPREF1078_RS09445at 472.497 kb on - strand, within HMPREF1078_RS09445at 472.497 kb on - strand, within HMPREF1078_RS09445at 472.497 kb on - strand, within HMPREF1078_RS09445at 472.516 kb on + strand, within HMPREF1078_RS09445at 472.542 kb on + strand, within HMPREF1078_RS09445at 472.592 kb on - strand, within HMPREF1078_RS09445at 472.592 kb on - strand, within HMPREF1078_RS09445at 472.595 kb on - strand, within HMPREF1078_RS09445at 472.595 kb on - strand, within HMPREF1078_RS09445at 472.750 kb on + strand, within HMPREF1078_RS09445at 472.756 kb on + strand, within HMPREF1078_RS09445at 472.758 kb on + strand, within HMPREF1078_RS09445at 472.759 kb on - strand, within HMPREF1078_RS09445at 472.759 kb on - strand, within HMPREF1078_RS09445at 472.761 kb on + strand, within HMPREF1078_RS09445at 472.781 kb on + strand, within HMPREF1078_RS09445at 472.782 kb on - strand, within HMPREF1078_RS09445at 472.782 kb on - strand, within HMPREF1078_RS09445at 472.823 kb on + strand, within HMPREF1078_RS09445at 472.850 kb on + strand, within HMPREF1078_RS09445at 472.850 kb on + strand, within HMPREF1078_RS09445at 472.850 kb on + strand, within HMPREF1078_RS09445at 472.851 kb on - strand, within HMPREF1078_RS09445at 472.851 kb on - strand, within HMPREF1078_RS09445at 472.878 kb on + strand, within HMPREF1078_RS09445at 472.879 kb on - strand, within HMPREF1078_RS09445at 472.889 kb on - strand, within HMPREF1078_RS09445at 472.889 kb on - strand, within HMPREF1078_RS09445at 472.931 kb on - strand, within HMPREF1078_RS09445at 472.932 kb on + strand, within HMPREF1078_RS09445at 472.932 kb on + strand, within HMPREF1078_RS09445at 472.932 kb on + strand, within HMPREF1078_RS09445at 472.933 kb on - strand, within HMPREF1078_RS09445at 472.933 kb on - strand, within HMPREF1078_RS09445at 472.933 kb on - strand, within HMPREF1078_RS09445at 472.933 kb on - strand, within HMPREF1078_RS09445at 473.040 kb on + strandat 473.040 kb on + strandat 473.040 kb on + strandat 473.042 kb on + strandat 473.043 kb on - strandat 473.069 kb on - strandat 473.150 kb on - strandat 473.150 kb on - strandat 473.152 kb on + strandat 473.153 kb on - strandat 473.159 kb on - strandat 473.159 kb on - strandat 473.173 kb on - strandat 473.173 kb on - strandat 473.177 kb on - strandat 473.188 kb on - strandat 473.215 kb on - strandat 473.232 kb on + strandat 473.232 kb on + strandat 473.232 kb on + strandat 473.237 kb on + strandat 473.237 kb on + strandat 473.240 kb on - strandat 473.279 kb on + strandat 473.279 kb on + strandat 473.279 kb on + strandat 473.280 kb on - strandat 473.280 kb on - strandat 473.280 kb on - strandat 473.280 kb on - strandat 473.348 kb on + strand, within HMPREF1078_RS09450at 473.375 kb on + strand, within HMPREF1078_RS09450at 473.376 kb on - strand, within HMPREF1078_RS09450at 473.376 kb on - strand, within HMPREF1078_RS09450at 473.388 kb on + strand, within HMPREF1078_RS09450at 473.388 kb on + strand, within HMPREF1078_RS09450at 473.389 kb on - strand, within HMPREF1078_RS09450at 473.407 kb on + strand, within HMPREF1078_RS09450at 473.408 kb on - strand, within HMPREF1078_RS09450at 473.413 kb on + strand, within HMPREF1078_RS09450at 473.414 kb on - strand, within HMPREF1078_RS09450at 473.472 kb on - strand, within HMPREF1078_RS09450at 473.501 kb on + strand, within HMPREF1078_RS09450at 473.546 kb on + strand, within HMPREF1078_RS09450at 473.547 kb on - strand, within HMPREF1078_RS09450at 473.606 kb on + strand, within HMPREF1078_RS09450at 473.606 kb on + strand, within HMPREF1078_RS09450at 473.606 kb on + strand, within HMPREF1078_RS09450at 473.606 kb on + strand, within HMPREF1078_RS09450at 473.606 kb on + strand, within HMPREF1078_RS09450at 473.607 kb on - strand, within HMPREF1078_RS09450at 473.607 kb on - strand, within HMPREF1078_RS09450at 473.608 kb on + strand, within HMPREF1078_RS09450at 473.615 kb on + strand, within HMPREF1078_RS09450at 473.651 kb on + strand, within HMPREF1078_RS09450at 473.651 kb on + strand, within HMPREF1078_RS09450at 473.652 kb on - strand, within HMPREF1078_RS09450at 473.699 kb on + strand, within HMPREF1078_RS09450at 473.700 kb on - strand, within HMPREF1078_RS09450at 473.716 kb on + strand, within HMPREF1078_RS09450at 473.732 kb on - strand, within HMPREF1078_RS09450at 473.743 kb on + strand, within HMPREF1078_RS09450at 473.744 kb on - strand, within HMPREF1078_RS09450at 473.795 kb on + strand, within HMPREF1078_RS09450at 473.795 kb on + strand, within HMPREF1078_RS09450at 473.795 kb on + strand, within HMPREF1078_RS09450at 473.796 kb on - strand, within HMPREF1078_RS09450at 473.807 kb on + strand, within HMPREF1078_RS09450at 473.808 kb on - strand, within HMPREF1078_RS09450at 473.808 kb on - strand, within HMPREF1078_RS09450at 473.808 kb on - strand, within HMPREF1078_RS09450at 473.808 kb on - strand, within HMPREF1078_RS09450at 473.808 kb on - strand, within HMPREF1078_RS09450at 473.808 kb on - strand, within HMPREF1078_RS09450at 473.809 kb on + strand, within HMPREF1078_RS09450at 473.809 kb on + strand, within HMPREF1078_RS09450at 473.809 kb on + strand, within HMPREF1078_RS09450at 473.842 kb on + strand, within HMPREF1078_RS09450at 473.842 kb on + strand, within HMPREF1078_RS09450at 474.007 kb on - strand, within HMPREF1078_RS09450at 474.008 kb on + strand, within HMPREF1078_RS09450at 474.019 kb on + strandat 474.020 kb on - strandat 474.020 kb on - strandat 474.020 kb on - strandat 474.022 kb on - strandat 474.022 kb on - strandat 474.022 kb on - strandat 474.022 kb on - strandat 474.026 kb on + strandat 474.099 kb on - strandat 474.157 kb on - strandat 474.183 kb on - strandat 474.216 kb on - strandat 474.216 kb on - strandat 474.227 kb on - strandat 474.254 kb on - strand, within HMPREF1078_RS09455at 474.254 kb on - strand, within HMPREF1078_RS09455at 474.254 kb on - strand, within HMPREF1078_RS09455at 474.288 kb on - strand, within HMPREF1078_RS09455at 474.291 kb on + strand, within HMPREF1078_RS09455at 474.292 kb on - strand, within HMPREF1078_RS09455at 474.316 kb on - strand, within HMPREF1078_RS09455at 474.399 kb on + strand, within HMPREF1078_RS09455at 474.426 kb on + strand, within HMPREF1078_RS09455at 474.426 kb on + strand, within HMPREF1078_RS09455at 474.428 kb on + strand, within HMPREF1078_RS09455at 474.429 kb on - strand, within HMPREF1078_RS09455at 474.459 kb on + strand, within HMPREF1078_RS09455at 474.459 kb on + strand, within HMPREF1078_RS09455at 474.459 kb on + strand, within HMPREF1078_RS09455at 474.460 kb on - strand, within HMPREF1078_RS09455at 474.494 kb on + strand, within HMPREF1078_RS09455at 474.506 kb on + strand, within HMPREF1078_RS09455at 474.515 kb on + strand, within HMPREF1078_RS09455at 474.551 kb on - strand, within HMPREF1078_RS09455at 474.657 kb on - strand, within HMPREF1078_RS09455at 474.663 kb on + strand, within HMPREF1078_RS09455at 474.663 kb on + strand, within HMPREF1078_RS09455at 474.665 kb on + strand, within HMPREF1078_RS09455at 474.665 kb on + strand, within HMPREF1078_RS09455at 474.666 kb on - strand, within HMPREF1078_RS09455at 474.767 kb on - strand, within HMPREF1078_RS09455at 474.799 kb on - strand, within HMPREF1078_RS09455at 474.884 kb on + strand, within HMPREF1078_RS09455at 474.919 kb on - strand, within HMPREF1078_RS09455at 475.048 kb on + strandat 475.048 kb on + strandat 475.048 kb on + strandat 475.049 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
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472,269 - HMPREF1078_RS09445 0.17 -1.4
472,269 - HMPREF1078_RS09445 0.17 -0.2
472,372 + HMPREF1078_RS09445 0.27 +1.2
472,372 + HMPREF1078_RS09445 0.27 -2.5
472,378 + HMPREF1078_RS09445 0.28 -2.7
472,382 + HMPREF1078_RS09445 0.28 +0.8
472,406 - HMPREF1078_RS09445 0.31 -1.0
472,409 - HMPREF1078_RS09445 0.31 -0.4
472,409 - HMPREF1078_RS09445 0.31 -0.6
472,416 + HMPREF1078_RS09445 0.32 -1.4
472,417 - HMPREF1078_RS09445 0.32 -1.9
472,429 + HMPREF1078_RS09445 0.33 +0.2
472,429 + HMPREF1078_RS09445 0.33 +0.8
472,430 - HMPREF1078_RS09445 0.33 -1.4
472,444 - HMPREF1078_RS09445 0.35 -0.6
472,444 - HMPREF1078_RS09445 0.35 +0.5
472,491 + HMPREF1078_RS09445 0.40 +0.4
472,492 - HMPREF1078_RS09445 0.40 -0.9
472,492 - HMPREF1078_RS09445 0.40 -0.2
472,496 + HMPREF1078_RS09445 0.40 +1.0
472,496 + HMPREF1078_RS09445 0.40 +2.4
472,496 + HMPREF1078_RS09445 0.40 -0.3
472,496 + HMPREF1078_RS09445 0.40 +0.4
472,496 + HMPREF1078_RS09445 0.40 +0.8
472,496 + HMPREF1078_RS09445 0.40 -0.6
472,496 + HMPREF1078_RS09445 0.40 -1.4
472,496 + HMPREF1078_RS09445 0.40 +0.5
472,496 + HMPREF1078_RS09445 0.40 +2.9
472,497 - HMPREF1078_RS09445 0.40 -0.6
472,497 - HMPREF1078_RS09445 0.40 +0.7
472,497 - HMPREF1078_RS09445 0.40 -0.1
472,516 + HMPREF1078_RS09445 0.42 +1.2
472,542 + HMPREF1078_RS09445 0.45 -1.2
472,592 - HMPREF1078_RS09445 0.50 +0.8
472,592 - HMPREF1078_RS09445 0.50 +0.4
472,595 - HMPREF1078_RS09445 0.50 -1.1
472,595 - HMPREF1078_RS09445 0.50 -2.8
472,750 + HMPREF1078_RS09445 0.66 -1.5
472,756 + HMPREF1078_RS09445 0.67 -0.5
472,758 + HMPREF1078_RS09445 0.67 +0.4
472,759 - HMPREF1078_RS09445 0.67 -0.4
472,759 - HMPREF1078_RS09445 0.67 -0.2
472,761 + HMPREF1078_RS09445 0.67 -0.8
472,781 + HMPREF1078_RS09445 0.69 +0.6
472,782 - HMPREF1078_RS09445 0.69 -2.3
472,782 - HMPREF1078_RS09445 0.69 +2.3
472,823 + HMPREF1078_RS09445 0.73 +0.2
472,850 + HMPREF1078_RS09445 0.76 +0.8
472,850 + HMPREF1078_RS09445 0.76 +0.9
472,850 + HMPREF1078_RS09445 0.76 -0.2
472,851 - HMPREF1078_RS09445 0.76 +0.2
472,851 - HMPREF1078_RS09445 0.76 -1.7
472,878 + HMPREF1078_RS09445 0.79 +0.2
472,879 - HMPREF1078_RS09445 0.79 +0.4
472,889 - HMPREF1078_RS09445 0.80 -3.1
472,889 - HMPREF1078_RS09445 0.80 +0.9
472,931 - HMPREF1078_RS09445 0.84 -3.1
472,932 + HMPREF1078_RS09445 0.85 +1.5
472,932 + HMPREF1078_RS09445 0.85 +0.3
472,932 + HMPREF1078_RS09445 0.85 -1.0
472,933 - HMPREF1078_RS09445 0.85 -0.7
472,933 - HMPREF1078_RS09445 0.85 +1.3
472,933 - HMPREF1078_RS09445 0.85 -2.8
472,933 - HMPREF1078_RS09445 0.85 -0.2
473,040 + +0.4
473,040 + +1.1
473,040 + -2.1
473,042 + +0.2
473,043 - -1.0
473,069 - +0.2
473,150 - -1.5
473,150 - -2.6
473,152 + -1.8
473,153 - -0.3
473,159 - +1.2
473,159 - -0.4
473,173 - -1.8
473,173 - -1.6
473,177 - -0.1
473,188 - +2.0
473,215 - -1.2
473,232 + -1.6
473,232 + -2.2
473,232 + -0.9
473,237 + -1.6
473,237 + -1.2
473,240 - -0.1
473,279 + +0.7
473,279 + -0.7
473,279 + -0.7
473,280 - -2.6
473,280 - -2.1
473,280 - -2.0
473,280 - +0.0
473,348 + HMPREF1078_RS09450 0.12 -1.1
473,375 + HMPREF1078_RS09450 0.15 -0.8
473,376 - HMPREF1078_RS09450 0.16 +0.8
473,376 - HMPREF1078_RS09450 0.16 +2.4
473,388 + HMPREF1078_RS09450 0.17 -2.6
473,388 + HMPREF1078_RS09450 0.17 +0.1
473,389 - HMPREF1078_RS09450 0.17 +0.9
473,407 + HMPREF1078_RS09450 0.19 -1.6
473,408 - HMPREF1078_RS09450 0.19 -0.8
473,413 + HMPREF1078_RS09450 0.20 -1.0
473,414 - HMPREF1078_RS09450 0.20 +0.8
473,472 - HMPREF1078_RS09450 0.27 -2.4
473,501 + HMPREF1078_RS09450 0.30 -0.5
473,546 + HMPREF1078_RS09450 0.35 -0.4
473,547 - HMPREF1078_RS09450 0.35 -2.2
473,606 + HMPREF1078_RS09450 0.42 +0.9
473,606 + HMPREF1078_RS09450 0.42 -3.2
473,606 + HMPREF1078_RS09450 0.42 +0.3
473,606 + HMPREF1078_RS09450 0.42 -0.1
473,606 + HMPREF1078_RS09450 0.42 -0.4
473,607 - HMPREF1078_RS09450 0.42 -3.3
473,607 - HMPREF1078_RS09450 0.42 -1.1
473,608 + HMPREF1078_RS09450 0.43 -1.9
473,615 + HMPREF1078_RS09450 0.43 -2.9
473,651 + HMPREF1078_RS09450 0.48 -1.1
473,651 + HMPREF1078_RS09450 0.48 -1.0
473,652 - HMPREF1078_RS09450 0.48 +1.8
473,699 + HMPREF1078_RS09450 0.53 -0.0
473,700 - HMPREF1078_RS09450 0.53 +0.5
473,716 + HMPREF1078_RS09450 0.55 -0.9
473,732 - HMPREF1078_RS09450 0.57 -0.5
473,743 + HMPREF1078_RS09450 0.58 -2.1
473,744 - HMPREF1078_RS09450 0.58 -1.6
473,795 + HMPREF1078_RS09450 0.64 -0.1
473,795 + HMPREF1078_RS09450 0.64 +0.7
473,795 + HMPREF1078_RS09450 0.64 -1.2
473,796 - HMPREF1078_RS09450 0.64 +0.4
473,807 + HMPREF1078_RS09450 0.66 +0.5
473,808 - HMPREF1078_RS09450 0.66 -1.3
473,808 - HMPREF1078_RS09450 0.66 -1.8
473,808 - HMPREF1078_RS09450 0.66 -1.8
473,808 - HMPREF1078_RS09450 0.66 -0.9
473,808 - HMPREF1078_RS09450 0.66 +0.7
473,808 - HMPREF1078_RS09450 0.66 +0.6
473,809 + HMPREF1078_RS09450 0.66 -1.7
473,809 + HMPREF1078_RS09450 0.66 -0.0
473,809 + HMPREF1078_RS09450 0.66 +0.4
473,842 + HMPREF1078_RS09450 0.70 -0.4
473,842 + HMPREF1078_RS09450 0.70 +0.8
474,007 - HMPREF1078_RS09450 0.89 -2.1
474,008 + HMPREF1078_RS09450 0.89 -2.2
474,019 + -1.5
474,020 - +0.8
474,020 - -0.8
474,020 - -1.0
474,022 - +1.6
474,022 - -0.7
474,022 - -0.2
474,022 - -1.0
474,026 + -0.9
474,099 - -0.9
474,157 - +0.8
474,183 - +0.8
474,216 - -1.7
474,216 - +0.9
474,227 - +1.2
474,254 - HMPREF1078_RS09455 0.11 +0.8
474,254 - HMPREF1078_RS09455 0.11 +0.2
474,254 - HMPREF1078_RS09455 0.11 -0.4
474,288 - HMPREF1078_RS09455 0.15 +2.0
474,291 + HMPREF1078_RS09455 0.15 +1.2
474,292 - HMPREF1078_RS09455 0.15 -0.4
474,316 - HMPREF1078_RS09455 0.18 -0.7
474,399 + HMPREF1078_RS09455 0.26 -2.2
474,426 + HMPREF1078_RS09455 0.29 +2.2
474,426 + HMPREF1078_RS09455 0.29 -0.7
474,428 + HMPREF1078_RS09455 0.29 +0.4
474,429 - HMPREF1078_RS09455 0.30 -1.1
474,459 + HMPREF1078_RS09455 0.33 -1.5
474,459 + HMPREF1078_RS09455 0.33 +2.3
474,459 + HMPREF1078_RS09455 0.33 -0.7
474,460 - HMPREF1078_RS09455 0.33 -1.6
474,494 + HMPREF1078_RS09455 0.37 +1.5
474,506 + HMPREF1078_RS09455 0.38 -0.2
474,515 + HMPREF1078_RS09455 0.39 +1.2
474,551 - HMPREF1078_RS09455 0.43 +0.4
474,657 - HMPREF1078_RS09455 0.54 -0.2
474,663 + HMPREF1078_RS09455 0.55 +0.4
474,663 + HMPREF1078_RS09455 0.55 -2.0
474,665 + HMPREF1078_RS09455 0.55 -1.1
474,665 + HMPREF1078_RS09455 0.55 +0.2
474,666 - HMPREF1078_RS09455 0.55 -0.0
474,767 - HMPREF1078_RS09455 0.66 +0.4
474,799 - HMPREF1078_RS09455 0.69 +0.8
474,884 + HMPREF1078_RS09455 0.78 -0.2
474,919 - HMPREF1078_RS09455 0.82 +1.1
475,048 + -0.2
475,048 + -1.1
475,048 + +1.8
475,049 - +0.8

Or see this region's nucleotide sequence