Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08535 and HMPREF1078_RS08540 are separated by 135 nucleotides HMPREF1078_RS08540 and HMPREF1078_RS08545 are separated by 22 nucleotides HMPREF1078_RS08545 and HMPREF1078_RS08550 are separated by 67 nucleotides HMPREF1078_RS08550 and HMPREF1078_RS08555 are separated by 170 nucleotides
HMPREF1078_RS08535: HMPREF1078_RS08535 - sodium:proton antiporter NhaD, at 285,975 to 287,384
_RS08535
HMPREF1078_RS08540: HMPREF1078_RS08540 - deoxyribonuclease IV, at 287,520 to 288,356
_RS08540
HMPREF1078_RS08545: HMPREF1078_RS08545 - PaaI family thioesterase, at 288,379 to 288,852
_RS08545
HMPREF1078_RS08550: HMPREF1078_RS08550 - DUF456 domain-containing protein, at 288,920 to 289,396
_RS08550
HMPREF1078_RS08555: HMPREF1078_RS08555 - DUF3795 domain-containing protein, at 289,567 to 289,905
_RS08555
Position (kb) 288
289 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 287.384 kb on + strand at 287.384 kb on + strand at 287.385 kb on - strand at 287.385 kb on - strand at 287.387 kb on + strand at 287.387 kb on + strand at 287.387 kb on + strand at 287.387 kb on + strand at 287.388 kb on - strand at 287.388 kb on - strand at 287.388 kb on - strand at 287.451 kb on + strand at 287.452 kb on - strand at 287.466 kb on + strand at 287.490 kb on - strand at 287.490 kb on - strand at 287.490 kb on - strand at 287.518 kb on + strand at 287.521 kb on + strand at 287.522 kb on - strand at 287.522 kb on - strand at 287.522 kb on - strand at 287.523 kb on + strand at 287.523 kb on + strand at 287.523 kb on + strand at 287.524 kb on - strand at 287.524 kb on - strand at 287.524 kb on - strand at 287.525 kb on + strand at 287.525 kb on + strand at 287.526 kb on - strand at 287.526 kb on - strand at 287.530 kb on + strand at 287.536 kb on + strand at 287.536 kb on + strand at 287.536 kb on + strand at 287.536 kb on + strand at 287.542 kb on - strand at 287.558 kb on + strand at 287.584 kb on - strand at 287.584 kb on - strand at 287.624 kb on + strand, within HMPREF1078_RS08540 at 287.625 kb on - strand, within HMPREF1078_RS08540 at 287.625 kb on - strand, within HMPREF1078_RS08540 at 287.631 kb on - strand, within HMPREF1078_RS08540 at 287.631 kb on - strand, within HMPREF1078_RS08540 at 287.658 kb on - strand, within HMPREF1078_RS08540 at 287.660 kb on + strand, within HMPREF1078_RS08540 at 287.660 kb on + strand, within HMPREF1078_RS08540 at 287.660 kb on + strand, within HMPREF1078_RS08540 at 287.661 kb on - strand, within HMPREF1078_RS08540 at 287.661 kb on - strand, within HMPREF1078_RS08540 at 287.707 kb on - strand, within HMPREF1078_RS08540 at 287.708 kb on + strand, within HMPREF1078_RS08540 at 287.708 kb on + strand, within HMPREF1078_RS08540 at 287.709 kb on - strand, within HMPREF1078_RS08540 at 287.736 kb on + strand, within HMPREF1078_RS08540 at 287.739 kb on + strand, within HMPREF1078_RS08540 at 287.740 kb on - strand, within HMPREF1078_RS08540 at 287.789 kb on + strand, within HMPREF1078_RS08540 at 287.789 kb on + strand, within HMPREF1078_RS08540 at 287.795 kb on - strand, within HMPREF1078_RS08540 at 287.810 kb on + strand, within HMPREF1078_RS08540 at 287.811 kb on - strand, within HMPREF1078_RS08540 at 287.811 kb on - strand, within HMPREF1078_RS08540 at 287.819 kb on + strand, within HMPREF1078_RS08540 at 287.819 kb on + strand, within HMPREF1078_RS08540 at 287.820 kb on - strand, within HMPREF1078_RS08540 at 287.820 kb on - strand, within HMPREF1078_RS08540 at 287.820 kb on - strand, within HMPREF1078_RS08540 at 287.823 kb on + strand, within HMPREF1078_RS08540 at 287.823 kb on + strand, within HMPREF1078_RS08540 at 287.824 kb on - strand, within HMPREF1078_RS08540 at 287.824 kb on - strand, within HMPREF1078_RS08540 at 287.825 kb on + strand, within HMPREF1078_RS08540 at 287.825 kb on + strand, within HMPREF1078_RS08540 at 287.826 kb on - strand, within HMPREF1078_RS08540 at 287.826 kb on - strand, within HMPREF1078_RS08540 at 287.826 kb on - strand, within HMPREF1078_RS08540 at 287.858 kb on + strand, within HMPREF1078_RS08540 at 287.864 kb on + strand, within HMPREF1078_RS08540 at 287.869 kb on + strand, within HMPREF1078_RS08540 at 287.869 kb on + strand, within HMPREF1078_RS08540 at 287.870 kb on - strand, within HMPREF1078_RS08540 at 287.889 kb on - strand, within HMPREF1078_RS08540 at 287.889 kb on - strand, within HMPREF1078_RS08540 at 287.918 kb on + strand, within HMPREF1078_RS08540 at 287.918 kb on + strand, within HMPREF1078_RS08540 at 287.925 kb on + strand, within HMPREF1078_RS08540 at 287.937 kb on + strand, within HMPREF1078_RS08540 at 287.937 kb on + strand, within HMPREF1078_RS08540 at 287.937 kb on + strand, within HMPREF1078_RS08540 at 287.938 kb on - strand, within HMPREF1078_RS08540 at 287.938 kb on - strand, within HMPREF1078_RS08540 at 287.938 kb on - strand, within HMPREF1078_RS08540 at 287.971 kb on + strand, within HMPREF1078_RS08540 at 287.975 kb on + strand, within HMPREF1078_RS08540 at 287.976 kb on - strand, within HMPREF1078_RS08540 at 287.976 kb on - strand, within HMPREF1078_RS08540 at 287.979 kb on + strand, within HMPREF1078_RS08540 at 287.979 kb on + strand, within HMPREF1078_RS08540 at 287.979 kb on + strand, within HMPREF1078_RS08540 at 287.980 kb on - strand, within HMPREF1078_RS08540 at 287.980 kb on - strand, within HMPREF1078_RS08540 at 287.980 kb on - strand, within HMPREF1078_RS08540 at 287.980 kb on - strand, within HMPREF1078_RS08540 at 287.980 kb on - strand, within HMPREF1078_RS08540 at 288.142 kb on + strand, within HMPREF1078_RS08540 at 288.143 kb on - strand, within HMPREF1078_RS08540 at 288.143 kb on - strand, within HMPREF1078_RS08540 at 288.161 kb on + strand, within HMPREF1078_RS08540 at 288.162 kb on - strand, within HMPREF1078_RS08540 at 288.163 kb on + strand, within HMPREF1078_RS08540 at 288.164 kb on - strand, within HMPREF1078_RS08540 at 288.164 kb on - strand, within HMPREF1078_RS08540 at 288.164 kb on - strand, within HMPREF1078_RS08540 at 288.164 kb on - strand, within HMPREF1078_RS08540 at 288.176 kb on - strand, within HMPREF1078_RS08540 at 288.213 kb on - strand, within HMPREF1078_RS08540 at 288.213 kb on - strand, within HMPREF1078_RS08540 at 288.348 kb on - strand at 288.349 kb on + strand at 288.350 kb on - strand at 288.350 kb on - strand at 288.357 kb on + strand at 288.357 kb on + strand at 288.357 kb on + strand at 288.358 kb on - strand at 288.358 kb on - strand at 288.362 kb on + strand at 288.363 kb on - strand at 288.438 kb on + strand, within HMPREF1078_RS08545 at 288.438 kb on + strand, within HMPREF1078_RS08545 at 288.439 kb on - strand, within HMPREF1078_RS08545 at 288.450 kb on - strand, within HMPREF1078_RS08545 at 288.468 kb on + strand, within HMPREF1078_RS08545 at 288.468 kb on + strand, within HMPREF1078_RS08545 at 288.468 kb on + strand, within HMPREF1078_RS08545 at 288.469 kb on - strand, within HMPREF1078_RS08545 at 288.472 kb on + strand, within HMPREF1078_RS08545 at 288.473 kb on - strand, within HMPREF1078_RS08545 at 288.492 kb on - strand, within HMPREF1078_RS08545 at 288.537 kb on + strand, within HMPREF1078_RS08545 at 288.570 kb on + strand, within HMPREF1078_RS08545 at 288.571 kb on - strand, within HMPREF1078_RS08545 at 288.633 kb on + strand, within HMPREF1078_RS08545 at 288.693 kb on + strand, within HMPREF1078_RS08545 at 288.694 kb on - strand, within HMPREF1078_RS08545 at 288.694 kb on - strand, within HMPREF1078_RS08545 at 288.694 kb on - strand, within HMPREF1078_RS08545 at 288.731 kb on + strand, within HMPREF1078_RS08545 at 288.737 kb on - strand, within HMPREF1078_RS08545 at 288.737 kb on - strand, within HMPREF1078_RS08545 at 288.737 kb on - strand, within HMPREF1078_RS08545 at 288.768 kb on + strand, within HMPREF1078_RS08545 at 288.810 kb on + strand at 288.810 kb on + strand at 288.810 kb on + strand at 288.810 kb on + strand at 288.811 kb on - strand at 288.811 kb on - strand at 288.811 kb on - strand at 288.811 kb on - strand at 288.811 kb on - strand at 288.812 kb on + strand at 288.812 kb on + strand at 288.812 kb on + strand at 288.813 kb on - strand at 288.813 kb on - strand at 288.813 kb on - strand at 288.853 kb on - strand at 288.927 kb on - strand at 288.950 kb on - strand at 289.065 kb on - strand, within HMPREF1078_RS08550 at 289.138 kb on + strand, within HMPREF1078_RS08550 at 289.138 kb on + strand, within HMPREF1078_RS08550 at 289.138 kb on + strand, within HMPREF1078_RS08550 at 289.139 kb on - strand, within HMPREF1078_RS08550 at 289.139 kb on - strand, within HMPREF1078_RS08550 at 289.139 kb on - strand, within HMPREF1078_RS08550 at 289.139 kb on - strand, within HMPREF1078_RS08550 at 289.139 kb on - strand, within HMPREF1078_RS08550 at 289.173 kb on + strand, within HMPREF1078_RS08550 at 289.173 kb on + strand, within HMPREF1078_RS08550 at 289.173 kb on + strand, within HMPREF1078_RS08550 at 289.201 kb on - strand, within HMPREF1078_RS08550 at 289.219 kb on + strand, within HMPREF1078_RS08550 at 289.253 kb on - strand, within HMPREF1078_RS08550 at 289.302 kb on + strand, within HMPREF1078_RS08550 at 289.322 kb on + strand, within HMPREF1078_RS08550 at 289.326 kb on - strand, within HMPREF1078_RS08550 at 289.368 kb on - strand at 289.391 kb on - strand at 289.392 kb on + strand at 289.396 kb on + strand at 289.396 kb on + strand at 289.397 kb on - strand at 289.397 kb on - strand at 289.397 kb on - strand at 289.398 kb on + strand at 289.398 kb on + strand at 289.398 kb on + strand at 289.398 kb on + strand at 289.398 kb on + strand at 289.398 kb on + strand at 289.399 kb on - strand at 289.399 kb on - strand at 289.399 kb on - strand at 289.404 kb on + strand at 289.417 kb on + strand at 289.417 kb on + strand at 289.417 kb on + strand at 289.421 kb on + strand at 289.421 kb on + strand at 289.422 kb on - strand at 289.422 kb on - strand at 289.427 kb on + strand at 289.437 kb on + strand at 289.463 kb on + strand at 289.508 kb on - strand at 289.564 kb on + strand at 289.565 kb on - strand at 289.569 kb on - strand at 289.635 kb on + strand, within HMPREF1078_RS08555 at 289.636 kb on - strand, within HMPREF1078_RS08555 at 289.636 kb on - strand, within HMPREF1078_RS08555 at 289.636 kb on - strand, within HMPREF1078_RS08555 at 289.690 kb on - strand, within HMPREF1078_RS08555 at 289.710 kb on + strand, within HMPREF1078_RS08555 at 289.710 kb on + strand, within HMPREF1078_RS08555 at 289.711 kb on - strand, within HMPREF1078_RS08555 at 289.749 kb on + strand, within HMPREF1078_RS08555
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C) remove 287,384 + -1.5 287,384 + -0.5 287,385 - +2.8 287,385 - -0.8 287,387 + +0.9 287,387 + -1.1 287,387 + +1.6 287,387 + -0.8 287,388 - -0.9 287,388 - +0.6 287,388 - +0.8 287,451 + +0.4 287,452 - -2.2 287,466 + +0.2 287,490 - -0.8 287,490 - -1.5 287,490 - +0.3 287,518 + +0.2 287,521 + -3.0 287,522 - +0.3 287,522 - -0.2 287,522 - -0.2 287,523 + -1.2 287,523 + -0.2 287,523 + -0.3 287,524 - -0.6 287,524 - -2.0 287,524 - -0.3 287,525 + -0.6 287,525 + -2.0 287,526 - +1.4 287,526 - -2.6 287,530 + -3.2 287,536 + +0.5 287,536 + +0.6 287,536 + -2.6 287,536 + +1.1 287,542 - +0.1 287,558 + -0.2 287,584 - +0.3 287,584 - -0.4 287,624 + HMPREF1078_RS08540 0.12 +0.1 287,625 - HMPREF1078_RS08540 0.13 -0.4 287,625 - HMPREF1078_RS08540 0.13 -1.0 287,631 - HMPREF1078_RS08540 0.13 +2.0 287,631 - HMPREF1078_RS08540 0.13 +0.7 287,658 - HMPREF1078_RS08540 0.16 -0.3 287,660 + HMPREF1078_RS08540 0.17 +0.4 287,660 + HMPREF1078_RS08540 0.17 +1.3 287,660 + HMPREF1078_RS08540 0.17 -1.5 287,661 - HMPREF1078_RS08540 0.17 +0.7 287,661 - HMPREF1078_RS08540 0.17 -0.0 287,707 - HMPREF1078_RS08540 0.22 -2.5 287,708 + HMPREF1078_RS08540 0.22 -0.5 287,708 + HMPREF1078_RS08540 0.22 +1.1 287,709 - HMPREF1078_RS08540 0.23 -2.1 287,736 + HMPREF1078_RS08540 0.26 +0.5 287,739 + HMPREF1078_RS08540 0.26 -1.1 287,740 - HMPREF1078_RS08540 0.26 -1.0 287,789 + HMPREF1078_RS08540 0.32 +1.5 287,789 + HMPREF1078_RS08540 0.32 +0.8 287,795 - HMPREF1078_RS08540 0.33 +0.9 287,810 + HMPREF1078_RS08540 0.35 +0.6 287,811 - HMPREF1078_RS08540 0.35 +0.6 287,811 - HMPREF1078_RS08540 0.35 +1.2 287,819 + HMPREF1078_RS08540 0.36 -1.9 287,819 + HMPREF1078_RS08540 0.36 +1.6 287,820 - HMPREF1078_RS08540 0.36 -1.0 287,820 - HMPREF1078_RS08540 0.36 -1.6 287,820 - HMPREF1078_RS08540 0.36 +0.6 287,823 + HMPREF1078_RS08540 0.36 -0.2 287,823 + HMPREF1078_RS08540 0.36 -1.0 287,824 - HMPREF1078_RS08540 0.36 -1.1 287,824 - HMPREF1078_RS08540 0.36 +1.0 287,825 + HMPREF1078_RS08540 0.36 -1.5 287,825 + HMPREF1078_RS08540 0.36 +0.2 287,826 - HMPREF1078_RS08540 0.37 +0.2 287,826 - HMPREF1078_RS08540 0.37 -1.0 287,826 - HMPREF1078_RS08540 0.37 -2.6 287,858 + HMPREF1078_RS08540 0.40 -0.4 287,864 + HMPREF1078_RS08540 0.41 +0.9 287,869 + HMPREF1078_RS08540 0.42 +0.5 287,869 + HMPREF1078_RS08540 0.42 -0.0 287,870 - HMPREF1078_RS08540 0.42 -0.9 287,889 - HMPREF1078_RS08540 0.44 -1.5 287,889 - HMPREF1078_RS08540 0.44 -0.0 287,918 + HMPREF1078_RS08540 0.48 +1.1 287,918 + HMPREF1078_RS08540 0.48 -0.4 287,925 + HMPREF1078_RS08540 0.48 -2.0 287,937 + HMPREF1078_RS08540 0.50 -1.5 287,937 + HMPREF1078_RS08540 0.50 -0.6 287,937 + HMPREF1078_RS08540 0.50 +0.8 287,938 - HMPREF1078_RS08540 0.50 -2.2 287,938 - HMPREF1078_RS08540 0.50 +1.5 287,938 - HMPREF1078_RS08540 0.50 -1.8 287,971 + HMPREF1078_RS08540 0.54 -0.6 287,975 + HMPREF1078_RS08540 0.54 -1.9 287,976 - HMPREF1078_RS08540 0.54 +0.2 287,976 - HMPREF1078_RS08540 0.54 +0.2 287,979 + HMPREF1078_RS08540 0.55 -1.1 287,979 + HMPREF1078_RS08540 0.55 -1.4 287,979 + HMPREF1078_RS08540 0.55 -3.1 287,980 - HMPREF1078_RS08540 0.55 -2.5 287,980 - HMPREF1078_RS08540 0.55 +0.7 287,980 - HMPREF1078_RS08540 0.55 +0.1 287,980 - HMPREF1078_RS08540 0.55 +0.3 287,980 - HMPREF1078_RS08540 0.55 -1.4 288,142 + HMPREF1078_RS08540 0.74 +1.0 288,143 - HMPREF1078_RS08540 0.74 +0.8 288,143 - HMPREF1078_RS08540 0.74 +0.7 288,161 + HMPREF1078_RS08540 0.77 +0.1 288,162 - HMPREF1078_RS08540 0.77 -0.7 288,163 + HMPREF1078_RS08540 0.77 -0.3 288,164 - HMPREF1078_RS08540 0.77 +0.5 288,164 - HMPREF1078_RS08540 0.77 -2.0 288,164 - HMPREF1078_RS08540 0.77 -0.5 288,164 - HMPREF1078_RS08540 0.77 -0.3 288,176 - HMPREF1078_RS08540 0.78 -0.6 288,213 - HMPREF1078_RS08540 0.83 -1.2 288,213 - HMPREF1078_RS08540 0.83 -1.9 288,348 - +0.2 288,349 + +0.7 288,350 - +0.3 288,350 - -1.6 288,357 + +1.2 288,357 + +0.1 288,357 + +0.6 288,358 - -1.1 288,358 - -0.6 288,362 + -0.7 288,363 - +0.3 288,438 + HMPREF1078_RS08545 0.12 -1.7 288,438 + HMPREF1078_RS08545 0.12 -0.9 288,439 - HMPREF1078_RS08545 0.13 -0.6 288,450 - HMPREF1078_RS08545 0.15 +0.0 288,468 + HMPREF1078_RS08545 0.19 -0.9 288,468 + HMPREF1078_RS08545 0.19 -0.8 288,468 + HMPREF1078_RS08545 0.19 +0.3 288,469 - HMPREF1078_RS08545 0.19 -0.7 288,472 + HMPREF1078_RS08545 0.20 -1.7 288,473 - HMPREF1078_RS08545 0.20 +1.0 288,492 - HMPREF1078_RS08545 0.24 +0.6 288,537 + HMPREF1078_RS08545 0.33 -0.4 288,570 + HMPREF1078_RS08545 0.40 -0.0 288,571 - HMPREF1078_RS08545 0.41 -0.1 288,633 + HMPREF1078_RS08545 0.54 -1.6 288,693 + HMPREF1078_RS08545 0.66 +0.1 288,694 - HMPREF1078_RS08545 0.66 +0.6 288,694 - HMPREF1078_RS08545 0.66 +0.5 288,694 - HMPREF1078_RS08545 0.66 -1.5 288,731 + HMPREF1078_RS08545 0.74 -0.1 288,737 - HMPREF1078_RS08545 0.76 -1.1 288,737 - HMPREF1078_RS08545 0.76 -0.5 288,737 - HMPREF1078_RS08545 0.76 +1.3 288,768 + HMPREF1078_RS08545 0.82 -0.3 288,810 + -0.6 288,810 + -0.3 288,810 + +0.2 288,810 + -1.1 288,811 - +0.2 288,811 - +1.0 288,811 - +0.9 288,811 - +0.3 288,811 - -2.1 288,812 + -0.5 288,812 + -0.3 288,812 + +2.1 288,813 - +1.2 288,813 - -1.5 288,813 - -1.7 288,853 - -2.0 288,927 - +0.5 288,950 - -2.9 289,065 - HMPREF1078_RS08550 0.30 +0.2 289,138 + HMPREF1078_RS08550 0.46 -0.9 289,138 + HMPREF1078_RS08550 0.46 -0.8 289,138 + HMPREF1078_RS08550 0.46 -1.0 289,139 - HMPREF1078_RS08550 0.46 -0.5 289,139 - HMPREF1078_RS08550 0.46 -1.0 289,139 - HMPREF1078_RS08550 0.46 -0.7 289,139 - HMPREF1078_RS08550 0.46 -0.2 289,139 - HMPREF1078_RS08550 0.46 -1.6 289,173 + HMPREF1078_RS08550 0.53 +0.3 289,173 + HMPREF1078_RS08550 0.53 -2.4 289,173 + HMPREF1078_RS08550 0.53 +0.4 289,201 - HMPREF1078_RS08550 0.59 -0.2 289,219 + HMPREF1078_RS08550 0.63 -0.0 289,253 - HMPREF1078_RS08550 0.70 -0.8 289,302 + HMPREF1078_RS08550 0.80 -0.8 289,322 + HMPREF1078_RS08550 0.84 +0.7 289,326 - HMPREF1078_RS08550 0.85 -1.3 289,368 - +1.6 289,391 - +1.3 289,392 + +2.3 289,396 + -0.7 289,396 + +1.7 289,397 - +0.3 289,397 - -1.3 289,397 - -1.2 289,398 + -1.4 289,398 + -2.4 289,398 + +0.2 289,398 + -1.2 289,398 + +0.2 289,398 + -1.9 289,399 - -0.9 289,399 - +0.4 289,399 - -0.4 289,404 + +1.6 289,417 + -0.0 289,417 + -0.3 289,417 + +0.7 289,421 + -1.4 289,421 + +1.6 289,422 - +0.0 289,422 - +1.2 289,427 + -0.7 289,437 + +0.8 289,463 + -1.3 289,508 - -0.4 289,564 + -0.8 289,565 - +1.4 289,569 - +1.6 289,635 + HMPREF1078_RS08555 0.20 +1.4 289,636 - HMPREF1078_RS08555 0.20 +0.9 289,636 - HMPREF1078_RS08555 0.20 -0.4 289,636 - HMPREF1078_RS08555 0.20 +0.4 289,690 - HMPREF1078_RS08555 0.36 -1.6 289,710 + HMPREF1078_RS08555 0.42 -1.1 289,710 + HMPREF1078_RS08555 0.42 +0.4 289,711 - HMPREF1078_RS08555 0.42 +1.8 289,749 + HMPREF1078_RS08555 0.54 -3.0
Or see this region's nucleotide sequence