Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04075 and HMPREF1078_RS04080 are separated by 180 nucleotides HMPREF1078_RS04080 and HMPREF1078_RS04085 are separated by 296 nucleotides
HMPREF1078_RS04075: HMPREF1078_RS04075 - DUF4974 domain-containing protein, at 27,992 to 29,050
_RS04075
HMPREF1078_RS04080: HMPREF1078_RS04080 - RNA polymerase sigma-70 factor, at 29,231 to 29,785
_RS04080
HMPREF1078_RS04085: HMPREF1078_RS04085 - TonB-dependent receptor, at 30,082 to 32,850
_RS04085
Position (kb) 29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 28.235 kb on - strand, within HMPREF1078_RS04075 at 28.235 kb on - strand, within HMPREF1078_RS04075 at 28.238 kb on + strand, within HMPREF1078_RS04075 at 28.260 kb on - strand, within HMPREF1078_RS04075 at 28.287 kb on - strand, within HMPREF1078_RS04075 at 28.287 kb on - strand, within HMPREF1078_RS04075 at 28.288 kb on + strand, within HMPREF1078_RS04075 at 28.304 kb on - strand, within HMPREF1078_RS04075 at 28.318 kb on - strand, within HMPREF1078_RS04075 at 28.338 kb on + strand, within HMPREF1078_RS04075 at 28.360 kb on + strand, within HMPREF1078_RS04075 at 28.361 kb on - strand, within HMPREF1078_RS04075 at 28.367 kb on - strand, within HMPREF1078_RS04075 at 28.367 kb on - strand, within HMPREF1078_RS04075 at 28.379 kb on + strand, within HMPREF1078_RS04075 at 28.379 kb on + strand, within HMPREF1078_RS04075 at 28.382 kb on + strand, within HMPREF1078_RS04075 at 28.382 kb on + strand, within HMPREF1078_RS04075 at 28.383 kb on - strand, within HMPREF1078_RS04075 at 28.383 kb on - strand, within HMPREF1078_RS04075 at 28.384 kb on + strand, within HMPREF1078_RS04075 at 28.389 kb on - strand, within HMPREF1078_RS04075 at 28.415 kb on + strand, within HMPREF1078_RS04075 at 28.490 kb on + strand, within HMPREF1078_RS04075 at 28.490 kb on + strand, within HMPREF1078_RS04075 at 28.491 kb on - strand, within HMPREF1078_RS04075 at 28.491 kb on - strand, within HMPREF1078_RS04075 at 28.536 kb on + strand, within HMPREF1078_RS04075 at 28.537 kb on - strand, within HMPREF1078_RS04075 at 28.537 kb on - strand, within HMPREF1078_RS04075 at 28.578 kb on + strand, within HMPREF1078_RS04075 at 28.579 kb on - strand, within HMPREF1078_RS04075 at 28.579 kb on - strand, within HMPREF1078_RS04075 at 28.600 kb on + strand, within HMPREF1078_RS04075 at 28.680 kb on - strand, within HMPREF1078_RS04075 at 28.726 kb on + strand, within HMPREF1078_RS04075 at 28.727 kb on - strand, within HMPREF1078_RS04075 at 28.727 kb on - strand, within HMPREF1078_RS04075 at 28.746 kb on - strand, within HMPREF1078_RS04075 at 28.790 kb on + strand, within HMPREF1078_RS04075 at 28.791 kb on - strand, within HMPREF1078_RS04075 at 28.834 kb on - strand, within HMPREF1078_RS04075 at 28.844 kb on - strand, within HMPREF1078_RS04075 at 28.882 kb on + strand, within HMPREF1078_RS04075 at 28.989 kb on + strand at 29.018 kb on + strand at 29.019 kb on - strand at 29.019 kb on - strand at 29.029 kb on + strand at 29.029 kb on + strand at 29.029 kb on + strand at 29.029 kb on + strand at 29.030 kb on - strand at 29.030 kb on - strand at 29.030 kb on - strand at 29.030 kb on - strand at 29.030 kb on - strand at 29.030 kb on - strand at 29.030 kb on - strand at 29.056 kb on - strand at 29.057 kb on + strand at 29.057 kb on + strand at 29.070 kb on + strand at 29.077 kb on + strand at 29.077 kb on + strand at 29.078 kb on - strand at 29.078 kb on - strand at 29.078 kb on - strand at 29.080 kb on - strand at 29.080 kb on - strand at 29.109 kb on + strand at 29.157 kb on + strand at 29.175 kb on - strand at 29.180 kb on + strand at 29.190 kb on + strand at 29.209 kb on - strand at 29.223 kb on + strand at 29.224 kb on - strand at 29.240 kb on - strand at 29.243 kb on - strand at 29.247 kb on + strand at 29.247 kb on + strand at 29.251 kb on - strand at 29.251 kb on - strand at 29.256 kb on + strand at 29.257 kb on - strand at 29.257 kb on - strand at 29.257 kb on - strand at 29.304 kb on - strand, within HMPREF1078_RS04080 at 29.307 kb on - strand, within HMPREF1078_RS04080 at 29.307 kb on - strand, within HMPREF1078_RS04080 at 29.338 kb on + strand, within HMPREF1078_RS04080 at 29.339 kb on - strand, within HMPREF1078_RS04080 at 29.377 kb on - strand, within HMPREF1078_RS04080 at 29.413 kb on - strand, within HMPREF1078_RS04080 at 29.443 kb on + strand, within HMPREF1078_RS04080 at 29.489 kb on + strand, within HMPREF1078_RS04080 at 29.507 kb on - strand, within HMPREF1078_RS04080 at 29.514 kb on + strand, within HMPREF1078_RS04080 at 29.514 kb on + strand, within HMPREF1078_RS04080 at 29.515 kb on - strand, within HMPREF1078_RS04080 at 29.515 kb on - strand, within HMPREF1078_RS04080 at 29.515 kb on - strand, within HMPREF1078_RS04080 at 29.515 kb on - strand, within HMPREF1078_RS04080 at 29.515 kb on - strand, within HMPREF1078_RS04080 at 29.516 kb on + strand, within HMPREF1078_RS04080 at 29.517 kb on - strand, within HMPREF1078_RS04080 at 29.517 kb on - strand, within HMPREF1078_RS04080 at 29.517 kb on - strand, within HMPREF1078_RS04080 at 29.556 kb on - strand, within HMPREF1078_RS04080 at 29.556 kb on - strand, within HMPREF1078_RS04080 at 29.583 kb on + strand, within HMPREF1078_RS04080 at 29.584 kb on - strand, within HMPREF1078_RS04080 at 29.584 kb on - strand, within HMPREF1078_RS04080 at 29.584 kb on - strand, within HMPREF1078_RS04080 at 29.584 kb on - strand, within HMPREF1078_RS04080 at 29.605 kb on - strand, within HMPREF1078_RS04080 at 29.616 kb on - strand, within HMPREF1078_RS04080 at 29.705 kb on + strand, within HMPREF1078_RS04080 at 29.725 kb on + strand, within HMPREF1078_RS04080 at 29.725 kb on + strand, within HMPREF1078_RS04080 at 29.726 kb on - strand, within HMPREF1078_RS04080 at 29.726 kb on - strand, within HMPREF1078_RS04080 at 29.731 kb on - strand at 29.773 kb on + strand at 29.778 kb on + strand at 29.791 kb on + strand at 29.813 kb on + strand at 29.819 kb on + strand at 29.819 kb on + strand at 29.819 kb on + strand at 29.819 kb on + strand at 29.820 kb on - strand at 29.820 kb on - strand at 29.833 kb on - strand at 29.833 kb on - strand at 29.839 kb on - strand at 29.842 kb on + strand at 29.842 kb on + strand at 29.857 kb on + strand at 29.857 kb on + strand at 29.858 kb on - strand at 29.858 kb on - strand at 29.883 kb on + strand at 29.884 kb on - strand at 29.884 kb on - strand at 29.910 kb on - strand at 29.913 kb on - strand at 29.913 kb on - strand at 29.942 kb on - strand at 29.965 kb on - strand at 29.965 kb on - strand at 29.968 kb on - strand at 30.002 kb on + strand at 30.002 kb on + strand at 30.003 kb on - strand at 30.006 kb on + strand at 30.006 kb on + strand at 30.006 kb on + strand at 30.007 kb on - strand at 30.007 kb on - strand at 30.016 kb on + strand at 30.017 kb on - strand at 30.021 kb on + strand at 30.021 kb on + strand at 30.021 kb on + strand at 30.057 kb on + strand at 30.074 kb on + strand at 30.075 kb on - strand at 30.082 kb on - strand at 30.082 kb on - strand at 30.092 kb on - strand at 30.092 kb on - strand at 30.107 kb on + strand at 30.107 kb on + strand at 30.108 kb on - strand at 30.176 kb on + strand at 30.176 kb on + strand at 30.177 kb on - strand at 30.177 kb on - strand at 30.263 kb on - strand at 30.263 kb on - strand at 30.263 kb on - strand at 30.422 kb on + strand, within HMPREF1078_RS04085 at 30.422 kb on + strand, within HMPREF1078_RS04085 at 30.423 kb on - strand, within HMPREF1078_RS04085 at 30.432 kb on + strand, within HMPREF1078_RS04085 at 30.442 kb on + strand, within HMPREF1078_RS04085 at 30.523 kb on - strand, within HMPREF1078_RS04085 at 30.647 kb on + strand, within HMPREF1078_RS04085 at 30.647 kb on + strand, within HMPREF1078_RS04085
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C) remove 28,235 - HMPREF1078_RS04075 0.23 +1.3 28,235 - HMPREF1078_RS04075 0.23 +0.7 28,238 + HMPREF1078_RS04075 0.23 -1.5 28,260 - HMPREF1078_RS04075 0.25 -0.9 28,287 - HMPREF1078_RS04075 0.28 +1.5 28,287 - HMPREF1078_RS04075 0.28 -0.2 28,288 + HMPREF1078_RS04075 0.28 +1.0 28,304 - HMPREF1078_RS04075 0.29 +1.5 28,318 - HMPREF1078_RS04075 0.31 -1.0 28,338 + HMPREF1078_RS04075 0.33 +0.4 28,360 + HMPREF1078_RS04075 0.35 -0.7 28,361 - HMPREF1078_RS04075 0.35 -1.0 28,367 - HMPREF1078_RS04075 0.35 +0.6 28,367 - HMPREF1078_RS04075 0.35 -1.0 28,379 + HMPREF1078_RS04075 0.37 -1.3 28,379 + HMPREF1078_RS04075 0.37 +1.1 28,382 + HMPREF1078_RS04075 0.37 -1.0 28,382 + HMPREF1078_RS04075 0.37 -1.4 28,383 - HMPREF1078_RS04075 0.37 +0.8 28,383 - HMPREF1078_RS04075 0.37 +1.2 28,384 + HMPREF1078_RS04075 0.37 +1.0 28,389 - HMPREF1078_RS04075 0.37 +0.7 28,415 + HMPREF1078_RS04075 0.40 -0.0 28,490 + HMPREF1078_RS04075 0.47 +1.1 28,490 + HMPREF1078_RS04075 0.47 +0.2 28,491 - HMPREF1078_RS04075 0.47 -0.2 28,491 - HMPREF1078_RS04075 0.47 -1.8 28,536 + HMPREF1078_RS04075 0.51 -0.6 28,537 - HMPREF1078_RS04075 0.51 +0.0 28,537 - HMPREF1078_RS04075 0.51 -0.5 28,578 + HMPREF1078_RS04075 0.55 +0.7 28,579 - HMPREF1078_RS04075 0.55 -2.8 28,579 - HMPREF1078_RS04075 0.55 +0.5 28,600 + HMPREF1078_RS04075 0.57 -0.5 28,680 - HMPREF1078_RS04075 0.65 +0.6 28,726 + HMPREF1078_RS04075 0.69 -0.9 28,727 - HMPREF1078_RS04075 0.69 -0.6 28,727 - HMPREF1078_RS04075 0.69 -0.9 28,746 - HMPREF1078_RS04075 0.71 -0.8 28,790 + HMPREF1078_RS04075 0.75 -1.4 28,791 - HMPREF1078_RS04075 0.75 -1.5 28,834 - HMPREF1078_RS04075 0.80 -0.5 28,844 - HMPREF1078_RS04075 0.80 +0.9 28,882 + HMPREF1078_RS04075 0.84 +1.1 28,989 + +0.4 29,018 + -1.7 29,019 - -0.7 29,019 - -0.1 29,029 + -1.0 29,029 + +1.3 29,029 + +0.2 29,029 + +0.1 29,030 - -0.6 29,030 - -0.7 29,030 - +0.9 29,030 - -0.2 29,030 - -0.6 29,030 - -1.9 29,030 - -2.1 29,056 - +0.8 29,057 + -0.5 29,057 + -2.4 29,070 + -0.2 29,077 + -2.1 29,077 + +0.7 29,078 - -1.1 29,078 - -0.7 29,078 - -1.4 29,080 - +1.3 29,080 - +1.6 29,109 + +1.0 29,157 + -1.5 29,175 - -0.3 29,180 + -0.6 29,190 + +0.1 29,209 - +0.0 29,223 + +0.5 29,224 - -0.0 29,240 - +0.1 29,243 - -0.7 29,247 + +0.5 29,247 + +1.2 29,251 - -1.6 29,251 - +1.0 29,256 + +1.8 29,257 - -0.2 29,257 - +0.2 29,257 - -0.8 29,304 - HMPREF1078_RS04080 0.13 -0.6 29,307 - HMPREF1078_RS04080 0.14 -0.8 29,307 - HMPREF1078_RS04080 0.14 +1.1 29,338 + HMPREF1078_RS04080 0.19 +0.5 29,339 - HMPREF1078_RS04080 0.19 +1.0 29,377 - HMPREF1078_RS04080 0.26 -0.6 29,413 - HMPREF1078_RS04080 0.33 +0.4 29,443 + HMPREF1078_RS04080 0.38 +0.5 29,489 + HMPREF1078_RS04080 0.46 +0.7 29,507 - HMPREF1078_RS04080 0.50 -1.9 29,514 + HMPREF1078_RS04080 0.51 -2.3 29,514 + HMPREF1078_RS04080 0.51 -3.0 29,515 - HMPREF1078_RS04080 0.51 -0.3 29,515 - HMPREF1078_RS04080 0.51 +0.2 29,515 - HMPREF1078_RS04080 0.51 -1.2 29,515 - HMPREF1078_RS04080 0.51 -0.8 29,515 - HMPREF1078_RS04080 0.51 +1.2 29,516 + HMPREF1078_RS04080 0.51 -0.2 29,517 - HMPREF1078_RS04080 0.52 -2.3 29,517 - HMPREF1078_RS04080 0.52 -0.3 29,517 - HMPREF1078_RS04080 0.52 +2.3 29,556 - HMPREF1078_RS04080 0.59 +0.6 29,556 - HMPREF1078_RS04080 0.59 -0.9 29,583 + HMPREF1078_RS04080 0.63 +0.1 29,584 - HMPREF1078_RS04080 0.64 +1.7 29,584 - HMPREF1078_RS04080 0.64 -1.2 29,584 - HMPREF1078_RS04080 0.64 +1.2 29,584 - HMPREF1078_RS04080 0.64 -2.3 29,605 - HMPREF1078_RS04080 0.67 +0.8 29,616 - HMPREF1078_RS04080 0.69 +0.3 29,705 + HMPREF1078_RS04080 0.85 -0.3 29,725 + HMPREF1078_RS04080 0.89 -0.2 29,725 + HMPREF1078_RS04080 0.89 -1.0 29,726 - HMPREF1078_RS04080 0.89 +0.6 29,726 - HMPREF1078_RS04080 0.89 -1.6 29,731 - -0.2 29,773 + +0.2 29,778 + +1.1 29,791 + -0.0 29,813 + -2.6 29,819 + -1.6 29,819 + +1.1 29,819 + -2.5 29,819 + -0.5 29,820 - +0.5 29,820 - -0.8 29,833 - -0.1 29,833 - +0.1 29,839 - -1.6 29,842 + +1.7 29,842 + +0.5 29,857 + -2.1 29,857 + -0.2 29,858 - +0.1 29,858 - +1.4 29,883 + +1.9 29,884 - +0.8 29,884 - -0.6 29,910 - -0.1 29,913 - -0.6 29,913 - +0.9 29,942 - -1.4 29,965 - -0.2 29,965 - -2.3 29,968 - -0.3 30,002 + +0.7 30,002 + -3.4 30,003 - -0.4 30,006 + -3.2 30,006 + -3.3 30,006 + -2.0 30,007 - +0.1 30,007 - -1.6 30,016 + -0.1 30,017 - +1.0 30,021 + -1.8 30,021 + +0.4 30,021 + -3.0 30,057 + -0.2 30,074 + +2.8 30,075 - -1.1 30,082 - +0.3 30,082 - +0.7 30,092 - -3.1 30,092 - -1.5 30,107 + -0.4 30,107 + -1.4 30,108 - -0.3 30,176 + +0.8 30,176 + -0.3 30,177 - +0.1 30,177 - +0.9 30,263 - +0.5 30,263 - +0.9 30,263 - +1.0 30,422 + HMPREF1078_RS04085 0.12 -0.8 30,422 + HMPREF1078_RS04085 0.12 -1.7 30,423 - HMPREF1078_RS04085 0.12 +0.4 30,432 + HMPREF1078_RS04085 0.13 -1.7 30,442 + HMPREF1078_RS04085 0.13 -0.8 30,523 - HMPREF1078_RS04085 0.16 +0.8 30,647 + HMPREF1078_RS04085 0.20 -0.4 30,647 + HMPREF1078_RS04085 0.20 +0.8
Or see this region's nucleotide sequence