Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00545

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
122,131	+		HMPREF1078_RS00535	0.56	-0.2
122,131	+		HMPREF1078_RS00535	0.56	-0.6
122,132	-		HMPREF1078_RS00535	0.56	+0.5
122,132	-		HMPREF1078_RS00535	0.56	-1.9
122,132	-		HMPREF1078_RS00535	0.56	-2.0
122,157	+		HMPREF1078_RS00535	0.60	-1.3
122,158	-		HMPREF1078_RS00535	0.60	-0.3
122,174	-		HMPREF1078_RS00535	0.63	-3.3
122,174	-		HMPREF1078_RS00535	0.63	-1.1
122,184	+		HMPREF1078_RS00535	0.64	+1.3
122,184	+		HMPREF1078_RS00535	0.64	+0.2
122,184	+		HMPREF1078_RS00535	0.64	-0.3
122,184	+		HMPREF1078_RS00535	0.64	-0.7
122,185	-		HMPREF1078_RS00535	0.64	-1.4
122,187	-		HMPREF1078_RS00535	0.65	-0.7
122,202	+		HMPREF1078_RS00535	0.67	-0.2
122,202	+		HMPREF1078_RS00535	0.67	+0.4
122,202	+		HMPREF1078_RS00535	0.67	-1.1
122,203	-		HMPREF1078_RS00535	0.67	+0.5
122,203	-		HMPREF1078_RS00535	0.67	-0.4
122,203	-		HMPREF1078_RS00535	0.67	-2.2
122,203	-		HMPREF1078_RS00535	0.67	-0.1
122,204	+		HMPREF1078_RS00535	0.67	-1.5
122,204	+		HMPREF1078_RS00535	0.67	-0.4
122,204	+		HMPREF1078_RS00535	0.67	+0.9
122,204	+		HMPREF1078_RS00535	0.67	-1.0
122,204	+		HMPREF1078_RS00535	0.67	+0.6
122,212	+		HMPREF1078_RS00535	0.69	+1.0
122,213	-		HMPREF1078_RS00535	0.69	-1.0
122,213	-		HMPREF1078_RS00535	0.69	+1.0
122,222	-		HMPREF1078_RS00535	0.70	+0.5
122,223	+		HMPREF1078_RS00535	0.70	+1.0
122,223	+		HMPREF1078_RS00535	0.70	+0.4
122,224	-		HMPREF1078_RS00535	0.71	-2.2
122,231	+		HMPREF1078_RS00535	0.72	-0.2
122,244	+		HMPREF1078_RS00535	0.74	-0.9
122,244	+		HMPREF1078_RS00535	0.74	-1.3
122,245	-		HMPREF1078_RS00535	0.74	-0.2
122,245	-		HMPREF1078_RS00535	0.74	-0.6
122,245	-		HMPREF1078_RS00535	0.74	+0.3
122,245	-		HMPREF1078_RS00535	0.74	-0.2
122,248	+		HMPREF1078_RS00535	0.74	-0.4
122,265	-		HMPREF1078_RS00535	0.77	-0.6
122,270	+		HMPREF1078_RS00535	0.78	-0.2
122,270	+		HMPREF1078_RS00535	0.78	+0.6
122,270	+		HMPREF1078_RS00535	0.78	-0.9
122,270	+		HMPREF1078_RS00535	0.78	-1.2
122,271	-		HMPREF1078_RS00535	0.78	+0.9
122,271	-		HMPREF1078_RS00535	0.78	-0.7
122,271	-		HMPREF1078_RS00535	0.78	+1.0
122,275	-		HMPREF1078_RS00535	0.79	-3.7
122,279	+		HMPREF1078_RS00535	0.79	-2.0
122,280	-		HMPREF1078_RS00535	0.80	-0.4
122,280	-		HMPREF1078_RS00535	0.80	+0.8
122,317	-		HMPREF1078_RS00535	0.85	-1.0
122,320	-		HMPREF1078_RS00535	0.86	+0.8
122,320	-		HMPREF1078_RS00535	0.86	+0.3
122,321	+		HMPREF1078_RS00535	0.86	-0.6
122,321	+		HMPREF1078_RS00535	0.86	+2.1
122,321	+		HMPREF1078_RS00535	0.86	-0.2
122,321	+		HMPREF1078_RS00535	0.86	+0.0
122,321	+		HMPREF1078_RS00535	0.86	-0.0
122,322	-		HMPREF1078_RS00535	0.86	-0.0
122,322	-		HMPREF1078_RS00535	0.86	-0.7
122,322	-		HMPREF1078_RS00535	0.86	+0.9
122,322	-		HMPREF1078_RS00535	0.86	+0.5
122,325	+		HMPREF1078_RS00535	0.87	-1.4
122,326	-		HMPREF1078_RS00535	0.87	-0.7
122,355	+				-2.1
122,355	+				-3.5
122,375	+				+0.6
122,376	-				-0.4
122,425	+				-0.3
122,425	+				+1.2
122,426	-				+1.6
122,434	+				-0.5
122,435	-				-2.4
122,435	-				+0.8
122,438	+				-0.5
122,465	+				-0.9
122,530	-				+1.4
122,547	+				+0.2
122,574	+		HMPREF1078_RS00540	0.14	-0.9
122,574	+		HMPREF1078_RS00540	0.14	+0.2
122,576	+		HMPREF1078_RS00540	0.14	-0.0
122,576	+		HMPREF1078_RS00540	0.14	-1.2
122,576	+		HMPREF1078_RS00540	0.14	-0.7
122,599	-		HMPREF1078_RS00540	0.18	-1.2
122,618	-		HMPREF1078_RS00540	0.21	-0.6
122,618	-		HMPREF1078_RS00540	0.21	-0.6
122,701	-		HMPREF1078_RS00540	0.34	+0.5
122,703	+		HMPREF1078_RS00540	0.35	-0.2
122,758	+		HMPREF1078_RS00540	0.44	+0.4
122,759	-		HMPREF1078_RS00540	0.44	-2.7
122,764	+		HMPREF1078_RS00540	0.44	+0.9
122,795	+		HMPREF1078_RS00540	0.50	-1.2
122,795	+		HMPREF1078_RS00540	0.50	-0.6
122,795	+		HMPREF1078_RS00540	0.50	+1.4
122,795	+		HMPREF1078_RS00540	0.50	-2.4
122,795	+		HMPREF1078_RS00540	0.50	+0.1
122,796	-		HMPREF1078_RS00540	0.50	-0.3
122,796	-		HMPREF1078_RS00540	0.50	-1.5
122,815	-		HMPREF1078_RS00540	0.53	-1.0
122,845	+		HMPREF1078_RS00540	0.58	-0.5
122,845	+		HMPREF1078_RS00540	0.58	+0.3
122,846	-		HMPREF1078_RS00540	0.58	-1.7
122,846	-		HMPREF1078_RS00540	0.58	-1.1
122,885	+		HMPREF1078_RS00540	0.64	-0.7
122,886	-		HMPREF1078_RS00540	0.64	+0.0
122,895	+		HMPREF1078_RS00540	0.66	-3.2
122,895	+		HMPREF1078_RS00540	0.66	+1.3
122,896	-		HMPREF1078_RS00540	0.66	-2.3
122,896	-		HMPREF1078_RS00540	0.66	+0.5
122,896	-		HMPREF1078_RS00540	0.66	-1.3
122,897	+		HMPREF1078_RS00540	0.66	-1.3
122,897	+		HMPREF1078_RS00540	0.66	+0.5
122,897	+		HMPREF1078_RS00540	0.66	+1.4
122,897	+		HMPREF1078_RS00540	0.66	-0.2
122,897	+		HMPREF1078_RS00540	0.66	-2.7
122,898	-		HMPREF1078_RS00540	0.66	-0.5
122,898	-		HMPREF1078_RS00540	0.66	-1.1
122,898	-		HMPREF1078_RS00540	0.66	+1.3
122,898	-		HMPREF1078_RS00540	0.66	+2.0
122,898	-		HMPREF1078_RS00540	0.66	+0.4
122,917	+		HMPREF1078_RS00540	0.69	+0.9
122,917	+		HMPREF1078_RS00540	0.69	-0.1
122,917	+		HMPREF1078_RS00540	0.69	-1.1
122,976	-		HMPREF1078_RS00540	0.79	+0.7
122,976	-		HMPREF1078_RS00540	0.79	+0.8
123,014	+		HMPREF1078_RS00540	0.85	+0.5
123,014	+		HMPREF1078_RS00540	0.85	-1.3
123,015	-		HMPREF1078_RS00540	0.85	+0.2
123,015	-		HMPREF1078_RS00540	0.85	+0.9
123,016	+		HMPREF1078_RS00540	0.85	-0.9
123,017	-		HMPREF1078_RS00540	0.85	+0.3
123,037	+		HMPREF1078_RS00540	0.89	-1.0
123,039	+		HMPREF1078_RS00540	0.89	+0.8
123,122	+				+0.5
123,155	+				+0.3
123,159	+				-0.8
123,160	-				+0.1
123,160	-				+2.4
123,162	+				-0.0
123,163	-				-1.2
123,163	-				+0.4
123,167	-				-2.9
123,167	-				+0.6
123,170	+				-1.3
123,171	-				-2.4
123,183	-				-3.1
123,188	+				+0.5
123,189	-				-1.3
123,189	-				+0.5
123,199	+		HMPREF1078_RS00545	0.11	+0.6
123,234	+		HMPREF1078_RS00545	0.15	+1.6
123,245	+		HMPREF1078_RS00545	0.17	-1.5
123,287	+		HMPREF1078_RS00545	0.22	-1.0
123,287	+		HMPREF1078_RS00545	0.22	+0.9
123,288	-		HMPREF1078_RS00545	0.22	+0.2
123,288	-		HMPREF1078_RS00545	0.22	+0.9
123,288	-		HMPREF1078_RS00545	0.22	-1.7
123,288	-		HMPREF1078_RS00545	0.22	-2.0
123,289	+		HMPREF1078_RS00545	0.22	-0.3
123,289	+		HMPREF1078_RS00545	0.22	+1.4
123,290	-		HMPREF1078_RS00545	0.22	-0.4
123,291	+		HMPREF1078_RS00545	0.22	-0.4
123,291	+		HMPREF1078_RS00545	0.22	-0.4
123,292	-		HMPREF1078_RS00545	0.22	+2.3
123,300	+		HMPREF1078_RS00545	0.23	+1.0
123,300	+		HMPREF1078_RS00545	0.23	+0.0
123,309	+		HMPREF1078_RS00545	0.25	+0.6
123,309	+		HMPREF1078_RS00545	0.25	+0.8
123,309	+		HMPREF1078_RS00545	0.25	-1.0
123,381	-		HMPREF1078_RS00545	0.33	+0.2
123,455	+		HMPREF1078_RS00545	0.43	-0.4
123,456	-		HMPREF1078_RS00545	0.43	+0.5
123,489	-		HMPREF1078_RS00545	0.47	-2.5
123,574	+		HMPREF1078_RS00545	0.57	-0.0
123,599	+		HMPREF1078_RS00545	0.60	+1.7
123,599	+		HMPREF1078_RS00545	0.60	-0.0
123,616	+		HMPREF1078_RS00545	0.63	-1.7
123,616	+		HMPREF1078_RS00545	0.63	+0.4
123,617	-		HMPREF1078_RS00545	0.63	-0.1
123,644	-		HMPREF1078_RS00545	0.66	-0.1
123,644	-		HMPREF1078_RS00545	0.66	+1.1
123,657	+		HMPREF1078_RS00545	0.68	-1.1
123,658	-		HMPREF1078_RS00545	0.68	+0.5
123,658	-		HMPREF1078_RS00545	0.68	-1.8
123,658	-		HMPREF1078_RS00545	0.68	+1.7
123,684	-		HMPREF1078_RS00545	0.71	+0.3
123,687	-		HMPREF1078_RS00545	0.71	-0.3
123,692	+		HMPREF1078_RS00545	0.72	-3.1
123,693	-		HMPREF1078_RS00545	0.72	+0.2
123,693	-		HMPREF1078_RS00545	0.72	+1.1
123,721	+		HMPREF1078_RS00545	0.76	-1.6
123,725	+		HMPREF1078_RS00545	0.76	-0.6
123,725	+		HMPREF1078_RS00545	0.76	+0.1
123,725	+		HMPREF1078_RS00545	0.76	-1.9
123,725	+		HMPREF1078_RS00545	0.76	+2.2
123,844	+				+0.1
123,845	-				-0.5
123,845	-				+0.3
123,882	+				+0.8
123,882	+				+0.8
123,888	+				-2.8
123,888	+				-1.9
123,888	+				-0.5
123,889	-				-1.5
123,889	-				-0.9
123,889	-				-0.1
123,894	+				+0.1
123,894	+				+0.7
123,900	+				-0.1
123,900	+				+0.6
123,900	+				+1.0
123,900	+				+0.3
123,911	+				-0.6
123,911	+				+1.2
123,913	+				+1.1
123,913	+				-0.9
123,913	+				-0.4
123,914	-				-0.7
123,914	-				-0.2
123,925	+				+1.1
123,926	-				-2.5
123,932	+				-2.7
123,933	-				+0.0
123,933	-				+0.1
123,961	-				+0.8
123,961	-				+0.2
123,989	+				+0.6
123,990	-				-0.7
124,037	-				+1.5
124,040	+				-0.2
124,040	+				+0.6
124,040	+				-0.3
124,040	+				-1.9
124,042	+				+1.5
124,042	+				+1.0
124,043	-				-3.4
124,043	-				+1.2
124,043	-				-2.9
124,143	+		HMPREF1078_RS00550	0.12	+0.4
124,144	-		HMPREF1078_RS00550	0.13	+0.9
124,145	+		HMPREF1078_RS00550	0.13	-0.2
124,145	+		HMPREF1078_RS00550	0.13	+0.4
124,145	+		HMPREF1078_RS00550	0.13	-0.0
124,146	-		HMPREF1078_RS00550	0.13	-0.4
124,146	-		HMPREF1078_RS00550	0.13	+0.9
124,148	+		HMPREF1078_RS00550	0.13	-0.4
124,149	-		HMPREF1078_RS00550	0.13	+0.2
124,149	-		HMPREF1078_RS00550	0.13	+0.8
124,149	-		HMPREF1078_RS00550	0.13	-0.1
124,149	-		HMPREF1078_RS00550	0.13	-0.8
124,150	+		HMPREF1078_RS00550	0.13	+1.1
124,150	+		HMPREF1078_RS00550	0.13	+0.2
124,150	+		HMPREF1078_RS00550	0.13	+1.1
124,151	-		HMPREF1078_RS00550	0.13	+1.8
124,151	-		HMPREF1078_RS00550	0.13	-0.1
124,166	-		HMPREF1078_RS00550	0.15	-1.3
124,250	-		HMPREF1078_RS00550	0.24	-0.7
124,251	+		HMPREF1078_RS00550	0.24	+0.7
124,252	-		HMPREF1078_RS00550	0.24	-1.6
124,252	-		HMPREF1078_RS00550	0.24	-0.0
124,265	+		HMPREF1078_RS00550	0.26	+1.5
124,266	-		HMPREF1078_RS00550	0.26	-1.1
124,266	-		HMPREF1078_RS00550	0.26	-1.9
124,266	-		HMPREF1078_RS00550	0.26	-0.3
124,266	-		HMPREF1078_RS00550	0.26	-0.2
124,266	-		HMPREF1078_RS00550	0.26	-0.0
124,267	+		HMPREF1078_RS00550	0.26	+1.2
124,267	+		HMPREF1078_RS00550	0.26	+1.0
124,267	+		HMPREF1078_RS00550	0.26	+0.1
124,267	+		HMPREF1078_RS00550	0.26	+0.7
124,267	+		HMPREF1078_RS00550	0.26	+0.3
124,267	+		HMPREF1078_RS00550	0.26	+0.3
124,267	+		HMPREF1078_RS00550	0.26	+1.1
124,268	-		HMPREF1078_RS00550	0.26	-1.1
124,268	-		HMPREF1078_RS00550	0.26	-1.1
124,268	-		HMPREF1078_RS00550	0.26	-0.3
124,268	-		HMPREF1078_RS00550	0.26	+2.4
124,268	-		HMPREF1078_RS00550	0.26	-3.0
124,278	+		HMPREF1078_RS00550	0.27	-1.6
124,300	-		HMPREF1078_RS00550	0.29	+0.6
124,319	-		HMPREF1078_RS00550	0.31	-0.0
124,396	-		HMPREF1078_RS00550	0.40	+1.5
124,396	-		HMPREF1078_RS00550	0.40	+0.4
124,423	+		HMPREF1078_RS00550	0.42	+0.9
124,450	+		HMPREF1078_RS00550	0.45	+0.5
124,450	+		HMPREF1078_RS00550	0.45	+0.5
124,450	+		HMPREF1078_RS00550	0.45	+2.3
124,450	+		HMPREF1078_RS00550	0.45	+0.8
124,450	+		HMPREF1078_RS00550	0.45	-1.5
124,454	-		HMPREF1078_RS00550	0.46	+0.9
124,489	-		HMPREF1078_RS00550	0.49	+1.0
124,489	-		HMPREF1078_RS00550	0.49	+0.3
124,489	-		HMPREF1078_RS00550	0.49	+3.8
124,514	+		HMPREF1078_RS00550	0.52	+0.0
124,583	+		HMPREF1078_RS00550	0.60	-0.2
124,584	-		HMPREF1078_RS00550	0.60	+0.6
124,613	+		HMPREF1078_RS00550	0.63	+0.3
124,641	+		HMPREF1078_RS00550	0.66	+2.7
124,641	+		HMPREF1078_RS00550	0.66	-1.7
124,646	+		HMPREF1078_RS00550	0.66	+1.4
124,646	+		HMPREF1078_RS00550	0.66	+1.3
124,647	-		HMPREF1078_RS00550	0.66	+0.6
124,662	+		HMPREF1078_RS00550	0.68	-2.0
124,689	-		HMPREF1078_RS00550	0.71	+1.6
124,689	-		HMPREF1078_RS00550	0.71	+2.3
124,689	-		HMPREF1078_RS00550	0.71	+0.9
124,690	+		HMPREF1078_RS00550	0.71	+0.8
124,693	-		HMPREF1078_RS00550	0.71	+1.7
124,751	-		HMPREF1078_RS00550	0.77	+1.8
124,753	+		HMPREF1078_RS00550	0.78	+1.1
124,780	-		HMPREF1078_RS00550	0.81	+1.7
124,831	+		HMPREF1078_RS00550	0.86	+1.0
124,832	-		HMPREF1078_RS00550	0.86	+0.2
124,863	+		HMPREF1078_RS00550	0.89	-1.6
124,871	+				-1.2
124,872	-				-1.1
124,875	+				-1.2
124,875	+				-0.2
124,875	+				-0.0
124,875	+				-0.4
124,875	+				-1.3
124,876	-				+2.3
124,876	-				-0.1
124,876	-				+1.9
124,876	-				+0.8
124,876	-				-1.2
124,877	-				+0.3