Experiment: Mixed culture; Pseudomonas DC3000 2:1 with Pseudomonas_SVBP6_ML3 in M9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JOY50_RS17170 and motA are separated by 130 nucleotides motA and motB are separated by 3 nucleotides
JOY50_RS17170: JOY50_RS17170 - HDOD domain-containing protein, at 16,439 to 17,974
_RS17170
JOY50_RS17175: motA - flagellar motor stator protein MotA, at 18,105 to 18,956
motA
JOY50_RS17180: motB - flagellar motor protein MotB, at 18,960 to 19,994
motB
Position (kb) 18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.114 kb on - strand, within JOY50_RS17170 at 17.114 kb on - strand, within JOY50_RS17170 at 17.118 kb on + strand, within JOY50_RS17170 at 17.119 kb on - strand, within JOY50_RS17170 at 17.162 kb on + strand, within JOY50_RS17170 at 17.176 kb on + strand, within JOY50_RS17170 at 17.176 kb on + strand, within JOY50_RS17170 at 17.184 kb on - strand, within JOY50_RS17170 at 17.197 kb on + strand, within JOY50_RS17170 at 17.202 kb on + strand, within JOY50_RS17170 at 17.202 kb on + strand, within JOY50_RS17170 at 17.205 kb on - strand, within JOY50_RS17170 at 17.210 kb on - strand, within JOY50_RS17170 at 17.210 kb on - strand, within JOY50_RS17170 at 17.210 kb on - strand, within JOY50_RS17170 at 17.210 kb on - strand, within JOY50_RS17170 at 17.215 kb on + strand, within JOY50_RS17170 at 17.257 kb on + strand, within JOY50_RS17170 at 17.272 kb on + strand, within JOY50_RS17170 at 17.291 kb on + strand, within JOY50_RS17170 at 17.297 kb on - strand, within JOY50_RS17170 at 17.311 kb on - strand, within JOY50_RS17170 at 17.332 kb on + strand, within JOY50_RS17170 at 17.334 kb on + strand, within JOY50_RS17170 at 17.340 kb on - strand, within JOY50_RS17170 at 17.342 kb on - strand, within JOY50_RS17170 at 17.344 kb on + strand, within JOY50_RS17170 at 17.344 kb on + strand, within JOY50_RS17170 at 17.352 kb on - strand, within JOY50_RS17170 at 17.352 kb on - strand, within JOY50_RS17170 at 17.352 kb on - strand, within JOY50_RS17170 at 17.372 kb on - strand, within JOY50_RS17170 at 17.372 kb on - strand, within JOY50_RS17170 at 17.372 kb on - strand, within JOY50_RS17170 at 17.374 kb on - strand, within JOY50_RS17170 at 17.382 kb on + strand, within JOY50_RS17170 at 17.382 kb on - strand, within JOY50_RS17170 at 17.394 kb on + strand, within JOY50_RS17170 at 17.421 kb on + strand, within JOY50_RS17170 at 17.421 kb on + strand, within JOY50_RS17170 at 17.429 kb on - strand, within JOY50_RS17170 at 17.429 kb on - strand, within JOY50_RS17170 at 17.429 kb on - strand, within JOY50_RS17170 at 17.445 kb on + strand, within JOY50_RS17170 at 17.453 kb on - strand, within JOY50_RS17170 at 17.455 kb on - strand, within JOY50_RS17170 at 17.472 kb on - strand, within JOY50_RS17170 at 17.472 kb on - strand, within JOY50_RS17170 at 17.482 kb on + strand, within JOY50_RS17170 at 17.482 kb on + strand, within JOY50_RS17170 at 17.482 kb on + strand, within JOY50_RS17170 at 17.482 kb on + strand, within JOY50_RS17170 at 17.482 kb on + strand, within JOY50_RS17170 at 17.482 kb on + strand, within JOY50_RS17170 at 17.487 kb on + strand, within JOY50_RS17170 at 17.487 kb on + strand, within JOY50_RS17170 at 17.487 kb on + strand, within JOY50_RS17170 at 17.487 kb on + strand, within JOY50_RS17170 at 17.487 kb on + strand, within JOY50_RS17170 at 17.490 kb on - strand, within JOY50_RS17170 at 17.490 kb on - strand, within JOY50_RS17170 at 17.490 kb on - strand, within JOY50_RS17170 at 17.490 kb on - strand, within JOY50_RS17170 at 17.495 kb on - strand, within JOY50_RS17170 at 17.517 kb on + strand, within JOY50_RS17170 at 17.522 kb on + strand, within JOY50_RS17170 at 17.525 kb on - strand, within JOY50_RS17170 at 17.596 kb on - strand, within JOY50_RS17170 at 17.608 kb on + strand, within JOY50_RS17170 at 17.670 kb on + strand, within JOY50_RS17170 at 17.670 kb on + strand, within JOY50_RS17170 at 17.678 kb on - strand, within JOY50_RS17170 at 17.688 kb on - strand, within JOY50_RS17170 at 17.698 kb on + strand, within JOY50_RS17170 at 17.751 kb on + strand, within JOY50_RS17170 at 17.754 kb on - strand, within JOY50_RS17170 at 17.799 kb on + strand, within JOY50_RS17170 at 17.802 kb on - strand, within JOY50_RS17170 at 17.869 kb on + strand at 17.879 kb on - strand at 17.914 kb on + strand at 17.919 kb on + strand at 17.927 kb on - strand at 18.188 kb on + strand at 18.245 kb on + strand, within motA at 18.245 kb on + strand, within motA at 18.258 kb on - strand, within motA at 18.265 kb on + strand, within motA at 18.318 kb on - strand, within motA at 18.325 kb on + strand, within motA at 18.325 kb on + strand, within motA at 18.333 kb on + strand, within motA at 18.344 kb on + strand, within motA at 18.345 kb on + strand, within motA at 18.424 kb on - strand, within motA at 18.447 kb on + strand, within motA at 18.464 kb on + strand, within motA at 18.528 kb on + strand, within motA at 18.528 kb on + strand, within motA at 18.557 kb on - strand, within motA at 18.642 kb on + strand, within motA at 18.642 kb on + strand, within motA at 18.642 kb on + strand, within motA at 18.642 kb on + strand, within motA at 18.642 kb on + strand, within motA at 18.642 kb on + strand, within motA at 18.650 kb on - strand, within motA at 18.712 kb on + strand, within motA at 18.712 kb on + strand, within motA at 18.717 kb on + strand, within motA at 18.720 kb on - strand, within motA at 18.722 kb on + strand, within motA at 18.781 kb on - strand, within motA at 18.824 kb on + strand, within motA at 18.824 kb on + strand, within motA at 18.824 kb on + strand, within motA at 18.832 kb on - strand, within motA at 18.865 kb on - strand, within motA at 18.894 kb on + strand at 18.901 kb on + strand at 18.901 kb on + strand at 18.901 kb on + strand at 18.901 kb on + strand at 18.901 kb on + strand at 18.909 kb on - strand at 18.974 kb on + strand at 18.981 kb on + strand at 18.982 kb on - strand at 19.072 kb on + strand, within motB at 19.235 kb on + strand, within motB at 19.240 kb on + strand, within motB at 19.259 kb on + strand, within motB at 19.276 kb on + strand, within motB at 19.281 kb on + strand, within motB at 19.286 kb on + strand, within motB at 19.286 kb on + strand, within motB at 19.286 kb on + strand, within motB at 19.286 kb on + strand, within motB at 19.286 kb on + strand, within motB at 19.294 kb on - strand, within motB at 19.354 kb on + strand, within motB at 19.356 kb on + strand, within motB at 19.390 kb on + strand, within motB at 19.397 kb on - strand, within motB at 19.410 kb on + strand, within motB at 19.443 kb on + strand, within motB at 19.517 kb on + strand, within motB at 19.525 kb on + strand, within motB at 19.534 kb on - strand, within motB at 19.628 kb on + strand, within motB at 19.668 kb on - strand, within motB at 19.679 kb on - strand, within motB at 19.695 kb on + strand, within motB at 19.702 kb on - strand, within motB at 19.721 kb on - strand, within motB at 19.793 kb on + strand, within motB at 19.803 kb on + strand, within motB at 19.808 kb on - strand, within motB at 19.866 kb on - strand, within motB at 19.871 kb on + strand, within motB at 19.889 kb on - strand, within motB at 19.889 kb on - strand, within motB at 19.889 kb on - strand, within motB at 19.896 kb on - strand at 19.908 kb on + strand at 19.921 kb on + strand at 19.948 kb on + strand at 19.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Pseudomonas DC3000 2:1 with Pseudomonas_SVBP6_ML3 in M9 remove 17,114 - JOY50_RS17170 0.44 -0.7 17,114 - JOY50_RS17170 0.44 +0.2 17,118 + JOY50_RS17170 0.44 -0.1 17,119 - JOY50_RS17170 0.44 -0.3 17,162 + JOY50_RS17170 0.47 -1.2 17,176 + JOY50_RS17170 0.48 -0.2 17,176 + JOY50_RS17170 0.48 +0.4 17,184 - JOY50_RS17170 0.49 +0.4 17,197 + JOY50_RS17170 0.49 +0.4 17,202 + JOY50_RS17170 0.50 -0.6 17,202 + JOY50_RS17170 0.50 -0.8 17,205 - JOY50_RS17170 0.50 -0.2 17,210 - JOY50_RS17170 0.50 +0.7 17,210 - JOY50_RS17170 0.50 -0.2 17,210 - JOY50_RS17170 0.50 +0.5 17,210 - JOY50_RS17170 0.50 -0.0 17,215 + JOY50_RS17170 0.51 -0.7 17,257 + JOY50_RS17170 0.53 +0.3 17,272 + JOY50_RS17170 0.54 -0.5 17,291 + JOY50_RS17170 0.55 -0.1 17,297 - JOY50_RS17170 0.56 -0.1 17,311 - JOY50_RS17170 0.57 -0.1 17,332 + JOY50_RS17170 0.58 +0.2 17,334 + JOY50_RS17170 0.58 -0.1 17,340 - JOY50_RS17170 0.59 -0.6 17,342 - JOY50_RS17170 0.59 -0.6 17,344 + JOY50_RS17170 0.59 -0.8 17,344 + JOY50_RS17170 0.59 -0.3 17,352 - JOY50_RS17170 0.59 -0.0 17,352 - JOY50_RS17170 0.59 +0.7 17,352 - JOY50_RS17170 0.59 +0.1 17,372 - JOY50_RS17170 0.61 -0.2 17,372 - JOY50_RS17170 0.61 -0.4 17,372 - JOY50_RS17170 0.61 -0.3 17,374 - JOY50_RS17170 0.61 -0.9 17,382 + JOY50_RS17170 0.61 -0.2 17,382 - JOY50_RS17170 0.61 +0.5 17,394 + JOY50_RS17170 0.62 -1.0 17,421 + JOY50_RS17170 0.64 +0.1 17,421 + JOY50_RS17170 0.64 +0.1 17,429 - JOY50_RS17170 0.64 -1.6 17,429 - JOY50_RS17170 0.64 +0.4 17,429 - JOY50_RS17170 0.64 -0.2 17,445 + JOY50_RS17170 0.65 -2.4 17,453 - JOY50_RS17170 0.66 -0.3 17,455 - JOY50_RS17170 0.66 +1.2 17,472 - JOY50_RS17170 0.67 -0.3 17,472 - JOY50_RS17170 0.67 +0.7 17,482 + JOY50_RS17170 0.68 -2.8 17,482 + JOY50_RS17170 0.68 +0.6 17,482 + JOY50_RS17170 0.68 -1.5 17,482 + JOY50_RS17170 0.68 +0.1 17,482 + JOY50_RS17170 0.68 -0.5 17,482 + JOY50_RS17170 0.68 -0.8 17,487 + JOY50_RS17170 0.68 -1.0 17,487 + JOY50_RS17170 0.68 -0.2 17,487 + JOY50_RS17170 0.68 -0.6 17,487 + JOY50_RS17170 0.68 -0.0 17,487 + JOY50_RS17170 0.68 -0.9 17,490 - JOY50_RS17170 0.68 -0.4 17,490 - JOY50_RS17170 0.68 -0.5 17,490 - JOY50_RS17170 0.68 -1.2 17,490 - JOY50_RS17170 0.68 -1.2 17,495 - JOY50_RS17170 0.69 -0.2 17,517 + JOY50_RS17170 0.70 -1.6 17,522 + JOY50_RS17170 0.71 -1.3 17,525 - JOY50_RS17170 0.71 -1.0 17,596 - JOY50_RS17170 0.75 -0.5 17,608 + JOY50_RS17170 0.76 -0.2 17,670 + JOY50_RS17170 0.80 -0.5 17,670 + JOY50_RS17170 0.80 +0.8 17,678 - JOY50_RS17170 0.81 -0.6 17,688 - JOY50_RS17170 0.81 +0.1 17,698 + JOY50_RS17170 0.82 -0.3 17,751 + JOY50_RS17170 0.85 -2.1 17,754 - JOY50_RS17170 0.86 -1.1 17,799 + JOY50_RS17170 0.89 +0.3 17,802 - JOY50_RS17170 0.89 +0.9 17,869 + -1.0 17,879 - -0.3 17,914 + -0.6 17,919 + +0.9 17,927 - +0.3 18,188 + -0.3 18,245 + motA JOY50_RS17175 0.16 -1.6 18,245 + motA JOY50_RS17175 0.16 +0.1 18,258 - motA JOY50_RS17175 0.18 -1.2 18,265 + motA JOY50_RS17175 0.19 +0.5 18,318 - motA JOY50_RS17175 0.25 +0.5 18,325 + motA JOY50_RS17175 0.26 -0.3 18,325 + motA JOY50_RS17175 0.26 +0.2 18,333 + motA JOY50_RS17175 0.27 -0.0 18,344 + motA JOY50_RS17175 0.28 +0.1 18,345 + motA JOY50_RS17175 0.28 -1.0 18,424 - motA JOY50_RS17175 0.37 +0.4 18,447 + motA JOY50_RS17175 0.40 -0.4 18,464 + motA JOY50_RS17175 0.42 +0.8 18,528 + motA JOY50_RS17175 0.50 +0.1 18,528 + motA JOY50_RS17175 0.50 -0.0 18,557 - motA JOY50_RS17175 0.53 -0.7 18,642 + motA JOY50_RS17175 0.63 +1.1 18,642 + motA JOY50_RS17175 0.63 -0.7 18,642 + motA JOY50_RS17175 0.63 +0.2 18,642 + motA JOY50_RS17175 0.63 +1.1 18,642 + motA JOY50_RS17175 0.63 +0.7 18,642 + motA JOY50_RS17175 0.63 -1.1 18,650 - motA JOY50_RS17175 0.64 -0.6 18,712 + motA JOY50_RS17175 0.71 +1.5 18,712 + motA JOY50_RS17175 0.71 +0.1 18,717 + motA JOY50_RS17175 0.72 +1.1 18,720 - motA JOY50_RS17175 0.72 +1.4 18,722 + motA JOY50_RS17175 0.72 -0.0 18,781 - motA JOY50_RS17175 0.79 -0.7 18,824 + motA JOY50_RS17175 0.84 -0.9 18,824 + motA JOY50_RS17175 0.84 -1.0 18,824 + motA JOY50_RS17175 0.84 +0.7 18,832 - motA JOY50_RS17175 0.85 -0.3 18,865 - motA JOY50_RS17175 0.89 -1.3 18,894 + +0.3 18,901 + +0.2 18,901 + -0.2 18,901 + +0.1 18,901 + -0.1 18,901 + +0.0 18,909 - +0.3 18,974 + +0.5 18,981 + +0.2 18,982 - -0.3 19,072 + motB JOY50_RS17180 0.11 +0.9 19,235 + motB JOY50_RS17180 0.27 +0.2 19,240 + motB JOY50_RS17180 0.27 +0.2 19,259 + motB JOY50_RS17180 0.29 -0.2 19,276 + motB JOY50_RS17180 0.31 +0.4 19,281 + motB JOY50_RS17180 0.31 +0.4 19,286 + motB JOY50_RS17180 0.31 +1.8 19,286 + motB JOY50_RS17180 0.31 +0.2 19,286 + motB JOY50_RS17180 0.31 -0.1 19,286 + motB JOY50_RS17180 0.31 -0.5 19,286 + motB JOY50_RS17180 0.31 +0.5 19,294 - motB JOY50_RS17180 0.32 +1.1 19,354 + motB JOY50_RS17180 0.38 +0.9 19,356 + motB JOY50_RS17180 0.38 -0.2 19,390 + motB JOY50_RS17180 0.42 +1.8 19,397 - motB JOY50_RS17180 0.42 -0.1 19,410 + motB JOY50_RS17180 0.43 -0.1 19,443 + motB JOY50_RS17180 0.47 +0.2 19,517 + motB JOY50_RS17180 0.54 -0.6 19,525 + motB JOY50_RS17180 0.55 +0.2 19,534 - motB JOY50_RS17180 0.55 -1.2 19,628 + motB JOY50_RS17180 0.65 +0.2 19,668 - motB JOY50_RS17180 0.68 -0.6 19,679 - motB JOY50_RS17180 0.69 +0.1 19,695 + motB JOY50_RS17180 0.71 -2.8 19,702 - motB JOY50_RS17180 0.72 +0.8 19,721 - motB JOY50_RS17180 0.74 +0.2 19,793 + motB JOY50_RS17180 0.80 +0.2 19,803 + motB JOY50_RS17180 0.81 -0.0 19,808 - motB JOY50_RS17180 0.82 -0.0 19,866 - motB JOY50_RS17180 0.88 -1.8 19,871 + motB JOY50_RS17180 0.88 +0.4 19,889 - motB JOY50_RS17180 0.90 -0.2 19,889 - motB JOY50_RS17180 0.90 -0.1 19,889 - motB JOY50_RS17180 0.90 +0.0 19,896 - -0.6 19,908 + -0.4 19,921 + -0.3 19,948 + -0.3 19,956 - +0.2
Or see this region's nucleotide sequence