Experiment: pectate 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11910 and HMPREF1078_RS11915 are separated by 14 nucleotides HMPREF1078_RS11915 and HMPREF1078_RS11920 are separated by 141 nucleotides
HMPREF1078_RS11910: HMPREF1078_RS11910 - TonB-dependent receptor, at 335,759 to 338,959
_RS11910
HMPREF1078_RS11915: HMPREF1078_RS11915 - RagB/SusD family nutrient uptake outer membrane protein, at 338,974 to 340,458
_RS11915
HMPREF1078_RS11920: HMPREF1078_RS11920 - GH92 family glycosyl hydrolase, at 340,600 to 342,885
_RS11920
Position (kb) 338
339
340
341 Strain fitness (log2 ratio) -2
-1
0
1 at 338.010 kb on + strand, within HMPREF1078_RS11910 at 338.010 kb on + strand, within HMPREF1078_RS11910 at 338.011 kb on - strand, within HMPREF1078_RS11910 at 338.011 kb on - strand, within HMPREF1078_RS11910 at 338.011 kb on - strand, within HMPREF1078_RS11910 at 338.012 kb on + strand, within HMPREF1078_RS11910 at 338.012 kb on + strand, within HMPREF1078_RS11910 at 338.047 kb on - strand, within HMPREF1078_RS11910 at 338.050 kb on + strand, within HMPREF1078_RS11910 at 338.051 kb on - strand, within HMPREF1078_RS11910 at 338.297 kb on + strand, within HMPREF1078_RS11910 at 338.348 kb on + strand, within HMPREF1078_RS11910 at 338.411 kb on - strand, within HMPREF1078_RS11910 at 338.450 kb on - strand, within HMPREF1078_RS11910 at 338.510 kb on - strand, within HMPREF1078_RS11910 at 338.510 kb on - strand, within HMPREF1078_RS11910 at 338.517 kb on + strand, within HMPREF1078_RS11910 at 338.544 kb on + strand, within HMPREF1078_RS11910 at 338.565 kb on - strand, within HMPREF1078_RS11910 at 338.805 kb on - strand at 338.805 kb on - strand at 338.805 kb on - strand at 338.805 kb on - strand at 338.905 kb on - strand at 338.909 kb on - strand at 338.912 kb on + strand at 338.913 kb on - strand at 338.913 kb on - strand at 339.002 kb on + strand at 339.019 kb on - strand at 339.152 kb on + strand, within HMPREF1078_RS11915 at 339.152 kb on + strand, within HMPREF1078_RS11915 at 339.152 kb on + strand, within HMPREF1078_RS11915 at 339.153 kb on - strand, within HMPREF1078_RS11915 at 339.154 kb on + strand, within HMPREF1078_RS11915 at 339.154 kb on + strand, within HMPREF1078_RS11915 at 339.154 kb on + strand, within HMPREF1078_RS11915 at 339.154 kb on + strand, within HMPREF1078_RS11915 at 339.154 kb on + strand, within HMPREF1078_RS11915 at 339.155 kb on - strand, within HMPREF1078_RS11915 at 339.155 kb on - strand, within HMPREF1078_RS11915 at 339.155 kb on - strand, within HMPREF1078_RS11915 at 339.155 kb on - strand, within HMPREF1078_RS11915 at 339.167 kb on - strand, within HMPREF1078_RS11915 at 339.270 kb on + strand, within HMPREF1078_RS11915 at 339.315 kb on + strand, within HMPREF1078_RS11915 at 339.321 kb on + strand, within HMPREF1078_RS11915 at 339.358 kb on - strand, within HMPREF1078_RS11915 at 339.628 kb on + strand, within HMPREF1078_RS11915 at 339.663 kb on + strand, within HMPREF1078_RS11915 at 339.663 kb on + strand, within HMPREF1078_RS11915 at 339.694 kb on + strand, within HMPREF1078_RS11915 at 339.762 kb on + strand, within HMPREF1078_RS11915 at 339.833 kb on - strand, within HMPREF1078_RS11915 at 339.833 kb on - strand, within HMPREF1078_RS11915 at 339.833 kb on - strand, within HMPREF1078_RS11915 at 339.898 kb on - strand, within HMPREF1078_RS11915 at 339.900 kb on + strand, within HMPREF1078_RS11915 at 339.900 kb on + strand, within HMPREF1078_RS11915 at 339.900 kb on + strand, within HMPREF1078_RS11915 at 339.900 kb on + strand, within HMPREF1078_RS11915 at 339.900 kb on + strand, within HMPREF1078_RS11915 at 339.901 kb on - strand, within HMPREF1078_RS11915 at 339.901 kb on - strand, within HMPREF1078_RS11915 at 339.922 kb on + strand, within HMPREF1078_RS11915 at 339.979 kb on + strand, within HMPREF1078_RS11915 at 339.980 kb on - strand, within HMPREF1078_RS11915 at 339.980 kb on - strand, within HMPREF1078_RS11915 at 340.256 kb on + strand, within HMPREF1078_RS11915 at 340.502 kb on + strand at 340.539 kb on + strand at 340.583 kb on - strand at 340.586 kb on + strand at 340.586 kb on + strand at 340.587 kb on - strand at 340.587 kb on - strand at 340.595 kb on - strand at 340.596 kb on + strand at 340.626 kb on + strand at 340.626 kb on + strand at 340.712 kb on + strand at 340.782 kb on + strand at 340.843 kb on + strand, within HMPREF1078_RS11920 at 341.011 kb on + strand, within HMPREF1078_RS11920 at 341.011 kb on + strand, within HMPREF1078_RS11920 at 341.213 kb on - strand, within HMPREF1078_RS11920
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/mL (C) remove 338,010 + HMPREF1078_RS11910 0.70 -1.1 338,010 + HMPREF1078_RS11910 0.70 +0.0 338,011 - HMPREF1078_RS11910 0.70 +0.5 338,011 - HMPREF1078_RS11910 0.70 +0.0 338,011 - HMPREF1078_RS11910 0.70 +0.6 338,012 + HMPREF1078_RS11910 0.70 +0.0 338,012 + HMPREF1078_RS11910 0.70 +1.3 338,047 - HMPREF1078_RS11910 0.71 -0.2 338,050 + HMPREF1078_RS11910 0.72 -0.4 338,051 - HMPREF1078_RS11910 0.72 -0.3 338,297 + HMPREF1078_RS11910 0.79 +1.0 338,348 + HMPREF1078_RS11910 0.81 +0.1 338,411 - HMPREF1078_RS11910 0.83 -1.1 338,450 - HMPREF1078_RS11910 0.84 +0.8 338,510 - HMPREF1078_RS11910 0.86 +1.7 338,510 - HMPREF1078_RS11910 0.86 +1.2 338,517 + HMPREF1078_RS11910 0.86 +0.5 338,544 + HMPREF1078_RS11910 0.87 -0.5 338,565 - HMPREF1078_RS11910 0.88 -0.0 338,805 - -0.3 338,805 - +0.2 338,805 - +0.1 338,805 - -2.2 338,905 - -1.1 338,909 - +0.7 338,912 + +0.8 338,913 - -0.8 338,913 - -0.2 339,002 + -0.2 339,019 - -0.5 339,152 + HMPREF1078_RS11915 0.12 -0.3 339,152 + HMPREF1078_RS11915 0.12 +0.0 339,152 + HMPREF1078_RS11915 0.12 +0.2 339,153 - HMPREF1078_RS11915 0.12 +0.4 339,154 + HMPREF1078_RS11915 0.12 -0.6 339,154 + HMPREF1078_RS11915 0.12 +0.2 339,154 + HMPREF1078_RS11915 0.12 -1.3 339,154 + HMPREF1078_RS11915 0.12 -0.5 339,154 + HMPREF1078_RS11915 0.12 -0.6 339,155 - HMPREF1078_RS11915 0.12 +0.1 339,155 - HMPREF1078_RS11915 0.12 -1.5 339,155 - HMPREF1078_RS11915 0.12 -0.9 339,155 - HMPREF1078_RS11915 0.12 -0.5 339,167 - HMPREF1078_RS11915 0.13 +0.3 339,270 + HMPREF1078_RS11915 0.20 -1.5 339,315 + HMPREF1078_RS11915 0.23 -0.7 339,321 + HMPREF1078_RS11915 0.23 +0.5 339,358 - HMPREF1078_RS11915 0.26 -0.5 339,628 + HMPREF1078_RS11915 0.44 +0.5 339,663 + HMPREF1078_RS11915 0.46 -0.7 339,663 + HMPREF1078_RS11915 0.46 -0.8 339,694 + HMPREF1078_RS11915 0.48 +0.9 339,762 + HMPREF1078_RS11915 0.53 -0.6 339,833 - HMPREF1078_RS11915 0.58 -2.1 339,833 - HMPREF1078_RS11915 0.58 +0.3 339,833 - HMPREF1078_RS11915 0.58 -2.2 339,898 - HMPREF1078_RS11915 0.62 +0.8 339,900 + HMPREF1078_RS11915 0.62 -1.5 339,900 + HMPREF1078_RS11915 0.62 +0.2 339,900 + HMPREF1078_RS11915 0.62 -0.4 339,900 + HMPREF1078_RS11915 0.62 -0.6 339,900 + HMPREF1078_RS11915 0.62 +0.2 339,901 - HMPREF1078_RS11915 0.62 -1.2 339,901 - HMPREF1078_RS11915 0.62 +0.1 339,922 + HMPREF1078_RS11915 0.64 +0.3 339,979 + HMPREF1078_RS11915 0.68 -1.2 339,980 - HMPREF1078_RS11915 0.68 +0.5 339,980 - HMPREF1078_RS11915 0.68 -0.5 340,256 + HMPREF1078_RS11915 0.86 +1.0 340,502 + -0.6 340,539 + -0.7 340,583 - +0.9 340,586 + +1.2 340,586 + +0.6 340,587 - +1.1 340,587 - -1.5 340,595 - +0.8 340,596 + +0.3 340,626 + +0.2 340,626 + +0.9 340,712 + -0.7 340,782 + +0.4 340,843 + HMPREF1078_RS11920 0.11 +0.3 341,011 + HMPREF1078_RS11920 0.18 +1.0 341,011 + HMPREF1078_RS11920 0.18 -1.8 341,213 - HMPREF1078_RS11920 0.27 -0.2
Or see this region's nucleotide sequence