Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15130 and HMPREF1078_RS15135 are separated by 452 nucleotides HMPREF1078_RS15135 and HMPREF1078_RS15140 overlap by 4 nucleotides
HMPREF1078_RS15130: HMPREF1078_RS15130 - DUF3298 and DUF4163 domain-containing protein, at 92,568 to 93,419
_RS15130
HMPREF1078_RS15135: HMPREF1078_RS15135 - FAD:protein FMN transferase, at 93,872 to 94,678
_RS15135
HMPREF1078_RS15140: HMPREF1078_RS15140 - Gfo/Idh/MocA family oxidoreductase, at 94,675 to 95,997
_RS15140
Position (kb) 93
94
95 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 92.912 kb on - strand, within HMPREF1078_RS15130 at 92.942 kb on - strand, within HMPREF1078_RS15130 at 92.942 kb on - strand, within HMPREF1078_RS15130 at 92.942 kb on - strand, within HMPREF1078_RS15130 at 92.956 kb on - strand, within HMPREF1078_RS15130 at 92.960 kb on + strand, within HMPREF1078_RS15130 at 92.960 kb on + strand, within HMPREF1078_RS15130 at 92.962 kb on + strand, within HMPREF1078_RS15130 at 92.962 kb on + strand, within HMPREF1078_RS15130 at 92.963 kb on - strand, within HMPREF1078_RS15130 at 92.963 kb on - strand, within HMPREF1078_RS15130 at 92.963 kb on - strand, within HMPREF1078_RS15130 at 92.963 kb on - strand, within HMPREF1078_RS15130 at 92.963 kb on - strand, within HMPREF1078_RS15130 at 93.090 kb on - strand, within HMPREF1078_RS15130 at 93.092 kb on - strand, within HMPREF1078_RS15130 at 93.115 kb on + strand, within HMPREF1078_RS15130 at 93.151 kb on + strand, within HMPREF1078_RS15130 at 93.152 kb on - strand, within HMPREF1078_RS15130 at 93.189 kb on + strand, within HMPREF1078_RS15130 at 93.190 kb on - strand, within HMPREF1078_RS15130 at 93.190 kb on - strand, within HMPREF1078_RS15130 at 93.273 kb on - strand, within HMPREF1078_RS15130 at 93.286 kb on + strand, within HMPREF1078_RS15130 at 93.286 kb on + strand, within HMPREF1078_RS15130 at 93.286 kb on + strand, within HMPREF1078_RS15130 at 93.286 kb on + strand, within HMPREF1078_RS15130 at 93.287 kb on - strand, within HMPREF1078_RS15130 at 93.287 kb on - strand, within HMPREF1078_RS15130 at 93.287 kb on - strand, within HMPREF1078_RS15130 at 93.287 kb on - strand, within HMPREF1078_RS15130 at 93.287 kb on - strand, within HMPREF1078_RS15130 at 93.287 kb on - strand, within HMPREF1078_RS15130 at 93.293 kb on + strand, within HMPREF1078_RS15130 at 93.294 kb on - strand, within HMPREF1078_RS15130 at 93.306 kb on - strand, within HMPREF1078_RS15130 at 93.317 kb on + strand, within HMPREF1078_RS15130 at 93.318 kb on - strand, within HMPREF1078_RS15130 at 93.320 kb on + strand, within HMPREF1078_RS15130 at 93.347 kb on + strand at 93.348 kb on - strand at 93.348 kb on - strand at 93.350 kb on + strand at 93.350 kb on + strand at 93.351 kb on - strand at 93.402 kb on - strand at 93.414 kb on - strand at 93.465 kb on + strand at 93.465 kb on + strand at 93.475 kb on + strand at 93.476 kb on - strand at 93.534 kb on + strand at 93.535 kb on - strand at 93.535 kb on - strand at 93.561 kb on - strand at 93.561 kb on - strand at 93.564 kb on + strand at 93.565 kb on - strand at 93.582 kb on + strand at 93.582 kb on + strand at 93.591 kb on - strand at 93.617 kb on + strand at 93.679 kb on + strand at 93.679 kb on + strand at 93.755 kb on - strand at 93.783 kb on - strand at 93.783 kb on - strand at 93.814 kb on + strand at 93.814 kb on + strand at 93.860 kb on - strand at 93.866 kb on + strand at 93.878 kb on + strand at 93.878 kb on + strand at 93.883 kb on + strand at 93.883 kb on + strand at 93.890 kb on + strand at 93.891 kb on - strand at 93.910 kb on - strand at 93.919 kb on + strand at 93.919 kb on + strand at 93.919 kb on + strand at 93.919 kb on + strand at 93.985 kb on + strand, within HMPREF1078_RS15135 at 94.028 kb on - strand, within HMPREF1078_RS15135 at 94.068 kb on - strand, within HMPREF1078_RS15135 at 94.123 kb on + strand, within HMPREF1078_RS15135 at 94.124 kb on - strand, within HMPREF1078_RS15135 at 94.126 kb on - strand, within HMPREF1078_RS15135 at 94.146 kb on - strand, within HMPREF1078_RS15135 at 94.166 kb on + strand, within HMPREF1078_RS15135 at 94.201 kb on - strand, within HMPREF1078_RS15135 at 94.201 kb on - strand, within HMPREF1078_RS15135 at 94.249 kb on - strand, within HMPREF1078_RS15135 at 94.281 kb on - strand, within HMPREF1078_RS15135 at 94.292 kb on - strand, within HMPREF1078_RS15135 at 94.327 kb on + strand, within HMPREF1078_RS15135 at 94.456 kb on + strand, within HMPREF1078_RS15135 at 94.480 kb on + strand, within HMPREF1078_RS15135 at 94.480 kb on + strand, within HMPREF1078_RS15135 at 94.481 kb on - strand, within HMPREF1078_RS15135 at 94.481 kb on - strand, within HMPREF1078_RS15135 at 94.665 kb on + strand at 94.665 kb on + strand at 94.665 kb on + strand at 94.666 kb on - strand at 94.667 kb on + strand at 94.667 kb on + strand at 94.668 kb on - strand at 94.668 kb on - strand at 94.668 kb on - strand at 94.669 kb on + strand at 94.669 kb on + strand at 94.670 kb on - strand at 94.670 kb on - strand at 94.670 kb on - strand at 94.670 kb on - strand at 94.674 kb on + strand at 94.875 kb on + strand, within HMPREF1078_RS15140 at 94.895 kb on - strand, within HMPREF1078_RS15140 at 94.921 kb on - strand, within HMPREF1078_RS15140 at 94.924 kb on + strand, within HMPREF1078_RS15140 at 94.925 kb on - strand, within HMPREF1078_RS15140 at 94.975 kb on + strand, within HMPREF1078_RS15140 at 94.975 kb on + strand, within HMPREF1078_RS15140 at 94.975 kb on + strand, within HMPREF1078_RS15140 at 94.975 kb on + strand, within HMPREF1078_RS15140 at 94.976 kb on - strand, within HMPREF1078_RS15140 at 94.976 kb on - strand, within HMPREF1078_RS15140 at 94.976 kb on - strand, within HMPREF1078_RS15140 at 95.012 kb on + strand, within HMPREF1078_RS15140 at 95.013 kb on - strand, within HMPREF1078_RS15140 at 95.013 kb on - strand, within HMPREF1078_RS15140 at 95.136 kb on + strand, within HMPREF1078_RS15140 at 95.137 kb on - strand, within HMPREF1078_RS15140 at 95.137 kb on - strand, within HMPREF1078_RS15140 at 95.140 kb on + strand, within HMPREF1078_RS15140 at 95.140 kb on + strand, within HMPREF1078_RS15140 at 95.140 kb on + strand, within HMPREF1078_RS15140 at 95.140 kb on + strand, within HMPREF1078_RS15140 at 95.141 kb on - strand, within HMPREF1078_RS15140 at 95.141 kb on - strand, within HMPREF1078_RS15140 at 95.194 kb on + strand, within HMPREF1078_RS15140 at 95.195 kb on - strand, within HMPREF1078_RS15140 at 95.207 kb on - strand, within HMPREF1078_RS15140 at 95.207 kb on - strand, within HMPREF1078_RS15140 at 95.207 kb on - strand, within HMPREF1078_RS15140 at 95.210 kb on + strand, within HMPREF1078_RS15140 at 95.325 kb on + strand, within HMPREF1078_RS15140 at 95.342 kb on + strand, within HMPREF1078_RS15140 at 95.345 kb on - strand, within HMPREF1078_RS15140 at 95.353 kb on + strand, within HMPREF1078_RS15140 at 95.451 kb on + strand, within HMPREF1078_RS15140 at 95.452 kb on - strand, within HMPREF1078_RS15140 at 95.483 kb on - strand, within HMPREF1078_RS15140
Per-strain Table
Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C) remove 92,912 - HMPREF1078_RS15130 0.40 -0.5 92,942 - HMPREF1078_RS15130 0.44 -2.1 92,942 - HMPREF1078_RS15130 0.44 -0.6 92,942 - HMPREF1078_RS15130 0.44 -1.6 92,956 - HMPREF1078_RS15130 0.46 -1.4 92,960 + HMPREF1078_RS15130 0.46 -0.6 92,960 + HMPREF1078_RS15130 0.46 +3.1 92,962 + HMPREF1078_RS15130 0.46 +1.7 92,962 + HMPREF1078_RS15130 0.46 +2.8 92,963 - HMPREF1078_RS15130 0.46 +2.3 92,963 - HMPREF1078_RS15130 0.46 -1.9 92,963 - HMPREF1078_RS15130 0.46 -0.5 92,963 - HMPREF1078_RS15130 0.46 -2.1 92,963 - HMPREF1078_RS15130 0.46 -1.2 93,090 - HMPREF1078_RS15130 0.61 -1.7 93,092 - HMPREF1078_RS15130 0.62 +0.2 93,115 + HMPREF1078_RS15130 0.64 +0.7 93,151 + HMPREF1078_RS15130 0.68 -1.7 93,152 - HMPREF1078_RS15130 0.69 -2.8 93,189 + HMPREF1078_RS15130 0.73 +1.6 93,190 - HMPREF1078_RS15130 0.73 -1.4 93,190 - HMPREF1078_RS15130 0.73 +2.5 93,273 - HMPREF1078_RS15130 0.83 +1.0 93,286 + HMPREF1078_RS15130 0.84 +0.3 93,286 + HMPREF1078_RS15130 0.84 -0.7 93,286 + HMPREF1078_RS15130 0.84 -0.1 93,286 + HMPREF1078_RS15130 0.84 +1.7 93,287 - HMPREF1078_RS15130 0.84 +3.1 93,287 - HMPREF1078_RS15130 0.84 -2.8 93,287 - HMPREF1078_RS15130 0.84 +0.1 93,287 - HMPREF1078_RS15130 0.84 +0.6 93,287 - HMPREF1078_RS15130 0.84 -1.3 93,287 - HMPREF1078_RS15130 0.84 -2.8 93,293 + HMPREF1078_RS15130 0.85 -0.5 93,294 - HMPREF1078_RS15130 0.85 -1.4 93,306 - HMPREF1078_RS15130 0.87 +0.2 93,317 + HMPREF1078_RS15130 0.88 +1.3 93,318 - HMPREF1078_RS15130 0.88 +1.3 93,320 + HMPREF1078_RS15130 0.88 +0.9 93,347 + +0.5 93,348 - -0.2 93,348 - -0.2 93,350 + +1.2 93,350 + +0.7 93,351 - -1.9 93,402 - -1.7 93,414 - +0.3 93,465 + +0.5 93,465 + +0.7 93,475 + +2.4 93,476 - -0.7 93,534 + -0.2 93,535 - -0.1 93,535 - -1.7 93,561 - -0.9 93,561 - -1.8 93,564 + +1.9 93,565 - -1.1 93,582 + -1.0 93,582 + +0.1 93,591 - -0.5 93,617 + -0.1 93,679 + +0.5 93,679 + -1.4 93,755 - +0.3 93,783 - -2.0 93,783 - -1.8 93,814 + -0.1 93,814 + -0.1 93,860 - -2.9 93,866 + -2.0 93,878 + +1.0 93,878 + -1.2 93,883 + +1.6 93,883 + -0.7 93,890 + -2.8 93,891 - -1.7 93,910 - +0.6 93,919 + +0.8 93,919 + -0.2 93,919 + +0.3 93,919 + -2.6 93,985 + HMPREF1078_RS15135 0.14 -0.1 94,028 - HMPREF1078_RS15135 0.19 -0.9 94,068 - HMPREF1078_RS15135 0.24 -0.4 94,123 + HMPREF1078_RS15135 0.31 +2.3 94,124 - HMPREF1078_RS15135 0.31 -1.7 94,126 - HMPREF1078_RS15135 0.31 +1.1 94,146 - HMPREF1078_RS15135 0.34 +1.3 94,166 + HMPREF1078_RS15135 0.36 -0.8 94,201 - HMPREF1078_RS15135 0.41 +0.1 94,201 - HMPREF1078_RS15135 0.41 -2.9 94,249 - HMPREF1078_RS15135 0.47 +0.7 94,281 - HMPREF1078_RS15135 0.51 +0.9 94,292 - HMPREF1078_RS15135 0.52 -2.8 94,327 + HMPREF1078_RS15135 0.56 -0.7 94,456 + HMPREF1078_RS15135 0.72 +1.7 94,480 + HMPREF1078_RS15135 0.75 +0.8 94,480 + HMPREF1078_RS15135 0.75 +2.7 94,481 - HMPREF1078_RS15135 0.75 -0.3 94,481 - HMPREF1078_RS15135 0.75 -0.2 94,665 + -0.2 94,665 + -0.4 94,665 + -0.4 94,666 - -1.2 94,667 + -0.9 94,667 + +0.5 94,668 - +0.1 94,668 - +1.3 94,668 - +0.6 94,669 + -0.3 94,669 + -0.6 94,670 - +0.5 94,670 - +0.5 94,670 - +1.9 94,670 - -1.1 94,674 + +0.5 94,875 + HMPREF1078_RS15140 0.15 +1.9 94,895 - HMPREF1078_RS15140 0.17 -2.2 94,921 - HMPREF1078_RS15140 0.19 -0.5 94,924 + HMPREF1078_RS15140 0.19 -0.0 94,925 - HMPREF1078_RS15140 0.19 +0.0 94,975 + HMPREF1078_RS15140 0.23 +0.7 94,975 + HMPREF1078_RS15140 0.23 -2.9 94,975 + HMPREF1078_RS15140 0.23 -1.7 94,975 + HMPREF1078_RS15140 0.23 -0.2 94,976 - HMPREF1078_RS15140 0.23 -1.3 94,976 - HMPREF1078_RS15140 0.23 -1.8 94,976 - HMPREF1078_RS15140 0.23 +0.8 95,012 + HMPREF1078_RS15140 0.25 -2.2 95,013 - HMPREF1078_RS15140 0.26 -0.5 95,013 - HMPREF1078_RS15140 0.26 -3.3 95,136 + HMPREF1078_RS15140 0.35 -0.7 95,137 - HMPREF1078_RS15140 0.35 +0.7 95,137 - HMPREF1078_RS15140 0.35 -1.3 95,140 + HMPREF1078_RS15140 0.35 -1.1 95,140 + HMPREF1078_RS15140 0.35 +1.7 95,140 + HMPREF1078_RS15140 0.35 +1.4 95,140 + HMPREF1078_RS15140 0.35 -0.1 95,141 - HMPREF1078_RS15140 0.35 +0.6 95,141 - HMPREF1078_RS15140 0.35 -2.4 95,194 + HMPREF1078_RS15140 0.39 -1.1 95,195 - HMPREF1078_RS15140 0.39 -2.3 95,207 - HMPREF1078_RS15140 0.40 +1.0 95,207 - HMPREF1078_RS15140 0.40 +0.7 95,207 - HMPREF1078_RS15140 0.40 -1.3 95,210 + HMPREF1078_RS15140 0.40 +0.1 95,325 + HMPREF1078_RS15140 0.49 +0.5 95,342 + HMPREF1078_RS15140 0.50 +0.6 95,345 - HMPREF1078_RS15140 0.51 -0.8 95,353 + HMPREF1078_RS15140 0.51 -0.2 95,451 + HMPREF1078_RS15140 0.59 +0.3 95,452 - HMPREF1078_RS15140 0.59 +2.2 95,483 - HMPREF1078_RS15140 0.61 +0.6
Or see this region's nucleotide sequence