Strain Fitness in Pseudomonas sp. BP01 around JOY50_RS11660

Experiment: Mixed culture; Pseudomonas DC3000 1:1 with Pseudomonas_SVBP6_ML3 in M9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJOY50_RS11655 and JOY50_RS11660 are separated by 274 nucleotidesJOY50_RS11660 and JOY50_RS11665 are separated by 9 nucleotides JOY50_RS11655: JOY50_RS11655 - MFS transporter, at 158,178 to 159,476 _RS11655 JOY50_RS11660: JOY50_RS11660 - transporter associated domain-containing protein, at 159,751 to 160,956 _RS11660 JOY50_RS11665: JOY50_RS11665 - inner membrane protein YpjD, at 160,966 to 161,775 _RS11665 Position (kb) 159 160 161Strain fitness (log2 ratio) -1 0 1at 158.811 kb on - strand, within JOY50_RS11655at 158.851 kb on - strand, within JOY50_RS11655at 158.854 kb on + strand, within JOY50_RS11655at 158.872 kb on - strand, within JOY50_RS11655at 158.877 kb on - strand, within JOY50_RS11655at 158.885 kb on + strand, within JOY50_RS11655at 158.890 kb on + strand, within JOY50_RS11655at 158.893 kb on - strand, within JOY50_RS11655at 158.945 kb on - strand, within JOY50_RS11655at 158.985 kb on - strand, within JOY50_RS11655at 159.009 kb on - strand, within JOY50_RS11655at 159.074 kb on - strand, within JOY50_RS11655at 159.074 kb on - strand, within JOY50_RS11655at 159.080 kb on - strand, within JOY50_RS11655at 159.080 kb on - strand, within JOY50_RS11655at 159.091 kb on - strand, within JOY50_RS11655at 159.116 kb on + strand, within JOY50_RS11655at 159.122 kb on + strand, within JOY50_RS11655at 159.122 kb on + strand, within JOY50_RS11655at 159.130 kb on - strand, within JOY50_RS11655at 159.140 kb on - strand, within JOY50_RS11655at 159.140 kb on - strand, within JOY50_RS11655at 159.219 kb on + strand, within JOY50_RS11655at 159.503 kb on + strandat 159.520 kb on - strandat 159.592 kb on + strandat 159.643 kb on - strandat 159.661 kb on - strandat 159.728 kb on + strandat 159.728 kb on + strandat 159.728 kb on + strandat 159.733 kb on + strandat 159.733 kb on + strandat 159.751 kb on - strandat 159.880 kb on - strand, within JOY50_RS11660at 159.907 kb on + strand, within JOY50_RS11660at 159.913 kb on + strand, within JOY50_RS11660at 159.926 kb on + strand, within JOY50_RS11660at 160.065 kb on - strand, within JOY50_RS11660at 160.083 kb on - strand, within JOY50_RS11660at 160.088 kb on - strand, within JOY50_RS11660at 160.109 kb on - strand, within JOY50_RS11660at 160.182 kb on - strand, within JOY50_RS11660at 160.220 kb on - strand, within JOY50_RS11660at 160.223 kb on + strand, within JOY50_RS11660at 160.231 kb on - strand, within JOY50_RS11660at 160.256 kb on - strand, within JOY50_RS11660at 160.256 kb on - strand, within JOY50_RS11660at 160.261 kb on - strand, within JOY50_RS11660at 160.265 kb on + strand, within JOY50_RS11660at 160.265 kb on + strand, within JOY50_RS11660at 160.265 kb on + strand, within JOY50_RS11660at 160.273 kb on - strand, within JOY50_RS11660at 160.394 kb on - strand, within JOY50_RS11660at 160.438 kb on - strand, within JOY50_RS11660at 160.440 kb on + strand, within JOY50_RS11660at 160.494 kb on - strand, within JOY50_RS11660at 160.511 kb on + strand, within JOY50_RS11660at 160.519 kb on - strand, within JOY50_RS11660at 160.571 kb on - strand, within JOY50_RS11660at 160.577 kb on + strand, within JOY50_RS11660at 160.600 kb on - strand, within JOY50_RS11660at 160.620 kb on + strand, within JOY50_RS11660at 160.686 kb on - strand, within JOY50_RS11660at 160.694 kb on - strand, within JOY50_RS11660at 160.721 kb on - strand, within JOY50_RS11660at 160.762 kb on + strand, within JOY50_RS11660at 160.768 kb on + strand, within JOY50_RS11660at 160.785 kb on + strand, within JOY50_RS11660at 160.788 kb on - strand, within JOY50_RS11660at 160.793 kb on - strand, within JOY50_RS11660at 160.807 kb on - strand, within JOY50_RS11660at 160.841 kb on - strandat 160.861 kb on - strandat 160.901 kb on - strandat 160.906 kb on - strandat 160.927 kb on + strandat 160.930 kb on - strandat 160.935 kb on - strandat 160.957 kb on - strandat 160.957 kb on - strandat 160.957 kb on - strandat 161.033 kb on - strandat 161.117 kb on - strand, within JOY50_RS11665at 161.117 kb on - strand, within JOY50_RS11665at 161.120 kb on + strand, within JOY50_RS11665at 161.128 kb on - strand, within JOY50_RS11665at 161.128 kb on - strand, within JOY50_RS11665at 161.143 kb on - strand, within JOY50_RS11665at 161.176 kb on - strand, within JOY50_RS11665at 161.288 kb on - strand, within JOY50_RS11665at 161.343 kb on - strand, within JOY50_RS11665at 161.385 kb on - strand, within JOY50_RS11665at 161.403 kb on - strand, within JOY50_RS11665at 161.434 kb on - strand, within JOY50_RS11665at 161.526 kb on - strand, within JOY50_RS11665at 161.534 kb on - strand, within JOY50_RS11665at 161.577 kb on - strand, within JOY50_RS11665at 161.650 kb on - strand, within JOY50_RS11665at 161.691 kb on - strand, within JOY50_RS11665at 161.691 kb on - strand, within JOY50_RS11665at 161.753 kb on - strandat 161.765 kb on - strandat 161.800 kb on - strandat 161.800 kb on - strandat 161.835 kb on - strandat 161.835 kb on - strandat 161.890 kb on + strandat 161.898 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Pseudomonas DC3000 1:1 with Pseudomonas_SVBP6_ML3 in M9
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158,811 - JOY50_RS11655 0.49 -0.0
158,851 - JOY50_RS11655 0.52 +0.1
158,854 + JOY50_RS11655 0.52 -0.3
158,872 - JOY50_RS11655 0.53 -1.0
158,877 - JOY50_RS11655 0.54 -0.2
158,885 + JOY50_RS11655 0.54 +0.5
158,890 + JOY50_RS11655 0.55 +1.1
158,893 - JOY50_RS11655 0.55 -0.9
158,945 - JOY50_RS11655 0.59 -1.7
158,985 - JOY50_RS11655 0.62 -0.6
159,009 - JOY50_RS11655 0.64 -0.4
159,074 - JOY50_RS11655 0.69 -0.9
159,074 - JOY50_RS11655 0.69 -1.5
159,080 - JOY50_RS11655 0.69 -1.3
159,080 - JOY50_RS11655 0.69 -1.2
159,091 - JOY50_RS11655 0.70 +0.1
159,116 + JOY50_RS11655 0.72 -0.3
159,122 + JOY50_RS11655 0.73 +0.2
159,122 + JOY50_RS11655 0.73 -1.3
159,130 - JOY50_RS11655 0.73 +0.7
159,140 - JOY50_RS11655 0.74 -0.6
159,140 - JOY50_RS11655 0.74 -1.7
159,219 + JOY50_RS11655 0.80 -0.3
159,503 + -1.7
159,520 - +0.5
159,592 + +0.1
159,643 - -0.1
159,661 - -0.4
159,728 + -0.5
159,728 + +0.7
159,728 + +0.3
159,733 + +0.1
159,733 + +0.1
159,751 - +1.2
159,880 - JOY50_RS11660 0.11 -0.4
159,907 + JOY50_RS11660 0.13 +0.9
159,913 + JOY50_RS11660 0.13 -0.7
159,926 + JOY50_RS11660 0.15 +0.8
160,065 - JOY50_RS11660 0.26 -1.0
160,083 - JOY50_RS11660 0.28 -0.3
160,088 - JOY50_RS11660 0.28 +0.2
160,109 - JOY50_RS11660 0.30 -1.2
160,182 - JOY50_RS11660 0.36 -0.5
160,220 - JOY50_RS11660 0.39 -0.5
160,223 + JOY50_RS11660 0.39 +0.3
160,231 - JOY50_RS11660 0.40 -0.0
160,256 - JOY50_RS11660 0.42 +0.3
160,256 - JOY50_RS11660 0.42 +0.1
160,261 - JOY50_RS11660 0.42 +1.0
160,265 + JOY50_RS11660 0.43 +0.1
160,265 + JOY50_RS11660 0.43 -0.9
160,265 + JOY50_RS11660 0.43 +0.2
160,273 - JOY50_RS11660 0.43 +0.3
160,394 - JOY50_RS11660 0.53 +0.6
160,438 - JOY50_RS11660 0.57 +0.9
160,440 + JOY50_RS11660 0.57 +0.4
160,494 - JOY50_RS11660 0.62 +0.1
160,511 + JOY50_RS11660 0.63 -1.2
160,519 - JOY50_RS11660 0.64 -0.3
160,571 - JOY50_RS11660 0.68 -0.4
160,577 + JOY50_RS11660 0.68 +1.7
160,600 - JOY50_RS11660 0.70 +0.4
160,620 + JOY50_RS11660 0.72 +0.1
160,686 - JOY50_RS11660 0.78 +0.2
160,694 - JOY50_RS11660 0.78 -0.3
160,721 - JOY50_RS11660 0.80 +0.1
160,762 + JOY50_RS11660 0.84 +0.4
160,768 + JOY50_RS11660 0.84 -0.8
160,785 + JOY50_RS11660 0.86 +0.7
160,788 - JOY50_RS11660 0.86 -1.0
160,793 - JOY50_RS11660 0.86 -0.0
160,807 - JOY50_RS11660 0.88 +0.3
160,841 - +0.4
160,861 - -0.6
160,901 - -0.2
160,906 - +0.3
160,927 + +0.5
160,930 - -1.2
160,935 - -0.0
160,957 - -0.6
160,957 - -0.4
160,957 - +0.2
161,033 - -0.2
161,117 - JOY50_RS11665 0.19 -0.5
161,117 - JOY50_RS11665 0.19 -0.4
161,120 + JOY50_RS11665 0.19 +0.2
161,128 - JOY50_RS11665 0.20 -1.6
161,128 - JOY50_RS11665 0.20 +0.5
161,143 - JOY50_RS11665 0.22 -0.9
161,176 - JOY50_RS11665 0.26 +0.3
161,288 - JOY50_RS11665 0.40 -0.1
161,343 - JOY50_RS11665 0.47 -0.8
161,385 - JOY50_RS11665 0.52 -0.4
161,403 - JOY50_RS11665 0.54 -0.6
161,434 - JOY50_RS11665 0.58 -1.2
161,526 - JOY50_RS11665 0.69 -0.2
161,534 - JOY50_RS11665 0.70 -0.3
161,577 - JOY50_RS11665 0.75 -0.2
161,650 - JOY50_RS11665 0.84 -0.2
161,691 - JOY50_RS11665 0.90 -0.2
161,691 - JOY50_RS11665 0.90 -1.2
161,753 - -0.6
161,765 - -1.0
161,800 - -0.3
161,800 - -0.7
161,835 - +0.3
161,835 - +1.2
161,890 + +0.1
161,898 - -0.5

Or see this region's nucleotide sequence