Experiment: .-Glucan from yeast 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15710 and HMPREF1078_RS15715 are separated by 39 nucleotides HMPREF1078_RS15715 and HMPREF1078_RS20075 are separated by 45 nucleotides HMPREF1078_RS20075 and HMPREF1078_RS15720 are separated by 241 nucleotides
HMPREF1078_RS15710: HMPREF1078_RS15710 - TolC family protein, at 257,695 to 259,077
_RS15710
HMPREF1078_RS15715: HMPREF1078_RS15715 - TetR/AcrR family transcriptional regulator, at 259,117 to 259,536
_RS15715
HMPREF1078_RS20075: HMPREF1078_RS20075 - helix-turn-helix domain containing protein, at 259,582 to 259,707
_RS20075
HMPREF1078_RS15720: HMPREF1078_RS15720 - helix-turn-helix transcriptional regulator, at 259,949 to 260,857
_RS15720
Position (kb) 259
260 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 258.142 kb on + strand, within HMPREF1078_RS15710 at 258.143 kb on - strand, within HMPREF1078_RS15710 at 258.243 kb on + strand, within HMPREF1078_RS15710 at 258.244 kb on - strand, within HMPREF1078_RS15710 at 258.244 kb on - strand, within HMPREF1078_RS15710 at 258.284 kb on - strand, within HMPREF1078_RS15710 at 258.324 kb on + strand, within HMPREF1078_RS15710 at 258.328 kb on + strand, within HMPREF1078_RS15710 at 258.328 kb on + strand, within HMPREF1078_RS15710 at 258.329 kb on - strand, within HMPREF1078_RS15710 at 258.329 kb on - strand, within HMPREF1078_RS15710 at 258.347 kb on - strand, within HMPREF1078_RS15710 at 258.347 kb on - strand, within HMPREF1078_RS15710 at 258.350 kb on - strand, within HMPREF1078_RS15710 at 258.478 kb on - strand, within HMPREF1078_RS15710 at 258.566 kb on + strand, within HMPREF1078_RS15710 at 258.577 kb on + strand, within HMPREF1078_RS15710 at 258.652 kb on + strand, within HMPREF1078_RS15710 at 258.653 kb on - strand, within HMPREF1078_RS15710 at 258.718 kb on - strand, within HMPREF1078_RS15710 at 258.718 kb on - strand, within HMPREF1078_RS15710 at 258.772 kb on + strand, within HMPREF1078_RS15710 at 258.772 kb on + strand, within HMPREF1078_RS15710 at 258.806 kb on + strand, within HMPREF1078_RS15710 at 258.806 kb on + strand, within HMPREF1078_RS15710 at 258.806 kb on + strand, within HMPREF1078_RS15710 at 258.807 kb on - strand, within HMPREF1078_RS15710 at 258.807 kb on - strand, within HMPREF1078_RS15710 at 258.807 kb on - strand, within HMPREF1078_RS15710 at 258.854 kb on - strand, within HMPREF1078_RS15710 at 258.875 kb on + strand, within HMPREF1078_RS15710 at 258.875 kb on + strand, within HMPREF1078_RS15710 at 258.875 kb on + strand, within HMPREF1078_RS15710 at 258.875 kb on + strand, within HMPREF1078_RS15710 at 258.876 kb on - strand, within HMPREF1078_RS15710 at 258.876 kb on - strand, within HMPREF1078_RS15710 at 258.894 kb on - strand, within HMPREF1078_RS15710 at 259.063 kb on + strand at 259.079 kb on + strand at 259.139 kb on + strand at 259.152 kb on - strand at 259.152 kb on - strand at 259.182 kb on + strand, within HMPREF1078_RS15715 at 259.202 kb on + strand, within HMPREF1078_RS15715 at 259.203 kb on + strand, within HMPREF1078_RS15715 at 259.204 kb on - strand, within HMPREF1078_RS15715 at 259.204 kb on - strand, within HMPREF1078_RS15715 at 259.205 kb on + strand, within HMPREF1078_RS15715 at 259.206 kb on - strand, within HMPREF1078_RS15715 at 259.206 kb on - strand, within HMPREF1078_RS15715 at 259.216 kb on - strand, within HMPREF1078_RS15715 at 259.297 kb on + strand, within HMPREF1078_RS15715 at 259.361 kb on - strand, within HMPREF1078_RS15715 at 259.435 kb on + strand, within HMPREF1078_RS15715 at 259.436 kb on + strand, within HMPREF1078_RS15715 at 259.437 kb on - strand, within HMPREF1078_RS15715 at 259.437 kb on - strand, within HMPREF1078_RS15715 at 259.470 kb on + strand, within HMPREF1078_RS15715 at 259.501 kb on + strand at 259.501 kb on + strand at 259.502 kb on - strand at 259.551 kb on + strand at 259.554 kb on + strand at 259.554 kb on + strand at 259.556 kb on + strand at 259.557 kb on - strand at 259.567 kb on + strand at 259.568 kb on - strand at 259.568 kb on - strand at 259.569 kb on + strand at 259.610 kb on + strand, within HMPREF1078_RS20075 at 259.611 kb on - strand, within HMPREF1078_RS20075 at 259.629 kb on + strand, within HMPREF1078_RS20075 at 259.630 kb on - strand, within HMPREF1078_RS20075 at 259.639 kb on - strand, within HMPREF1078_RS20075 at 259.647 kb on + strand, within HMPREF1078_RS20075 at 259.647 kb on + strand, within HMPREF1078_RS20075 at 259.657 kb on - strand, within HMPREF1078_RS20075 at 259.657 kb on - strand, within HMPREF1078_RS20075 at 259.709 kb on - strand at 259.730 kb on + strand at 259.736 kb on - strand at 259.743 kb on - strand at 259.750 kb on - strand at 259.779 kb on - strand at 259.848 kb on - strand at 259.848 kb on - strand at 259.864 kb on + strand at 259.933 kb on + strand at 259.934 kb on - strand at 259.936 kb on + strand at 259.936 kb on + strand at 259.936 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.945 kb on - strand at 259.965 kb on + strand at 259.966 kb on - strand at 259.969 kb on - strand at 259.988 kb on - strand at 259.988 kb on - strand at 259.993 kb on + strand at 259.997 kb on - strand at 260.050 kb on + strand, within HMPREF1078_RS15720 at 260.100 kb on + strand, within HMPREF1078_RS15720 at 260.156 kb on + strand, within HMPREF1078_RS15720 at 260.165 kb on + strand, within HMPREF1078_RS15720 at 260.224 kb on + strand, within HMPREF1078_RS15720 at 260.225 kb on - strand, within HMPREF1078_RS15720 at 260.287 kb on + strand, within HMPREF1078_RS15720 at 260.288 kb on - strand, within HMPREF1078_RS15720 at 260.317 kb on + strand, within HMPREF1078_RS15720 at 260.320 kb on - strand, within HMPREF1078_RS15720 at 260.328 kb on - strand, within HMPREF1078_RS15720 at 260.329 kb on + strand, within HMPREF1078_RS15720 at 260.354 kb on - strand, within HMPREF1078_RS15720 at 260.405 kb on - strand, within HMPREF1078_RS15720 at 260.406 kb on + strand, within HMPREF1078_RS15720 at 260.406 kb on + strand, within HMPREF1078_RS15720 at 260.452 kb on - strand, within HMPREF1078_RS15720 at 260.494 kb on + strand, within HMPREF1078_RS15720 at 260.494 kb on + strand, within HMPREF1078_RS15720 at 260.497 kb on - strand, within HMPREF1078_RS15720 at 260.503 kb on - strand, within HMPREF1078_RS15720
Per-strain Table
Position Strand Gene LocusTag Fraction .-Glucan from yeast 2.5 mg/mL (C) remove 258,142 + HMPREF1078_RS15710 0.32 +2.2 258,143 - HMPREF1078_RS15710 0.32 -1.7 258,243 + HMPREF1078_RS15710 0.40 -1.0 258,244 - HMPREF1078_RS15710 0.40 +2.1 258,244 - HMPREF1078_RS15710 0.40 -0.8 258,284 - HMPREF1078_RS15710 0.43 +0.7 258,324 + HMPREF1078_RS15710 0.45 +0.6 258,328 + HMPREF1078_RS15710 0.46 -1.7 258,328 + HMPREF1078_RS15710 0.46 +0.3 258,329 - HMPREF1078_RS15710 0.46 +0.3 258,329 - HMPREF1078_RS15710 0.46 -1.3 258,347 - HMPREF1078_RS15710 0.47 -0.8 258,347 - HMPREF1078_RS15710 0.47 -0.7 258,350 - HMPREF1078_RS15710 0.47 +1.2 258,478 - HMPREF1078_RS15710 0.57 -1.3 258,566 + HMPREF1078_RS15710 0.63 -0.2 258,577 + HMPREF1078_RS15710 0.64 -0.2 258,652 + HMPREF1078_RS15710 0.69 -4.5 258,653 - HMPREF1078_RS15710 0.69 -0.5 258,718 - HMPREF1078_RS15710 0.74 -0.5 258,718 - HMPREF1078_RS15710 0.74 -1.9 258,772 + HMPREF1078_RS15710 0.78 -1.2 258,772 + HMPREF1078_RS15710 0.78 -1.1 258,806 + HMPREF1078_RS15710 0.80 -0.1 258,806 + HMPREF1078_RS15710 0.80 -1.8 258,806 + HMPREF1078_RS15710 0.80 +0.1 258,807 - HMPREF1078_RS15710 0.80 -1.0 258,807 - HMPREF1078_RS15710 0.80 -0.2 258,807 - HMPREF1078_RS15710 0.80 -0.9 258,854 - HMPREF1078_RS15710 0.84 +0.0 258,875 + HMPREF1078_RS15710 0.85 -2.7 258,875 + HMPREF1078_RS15710 0.85 -2.6 258,875 + HMPREF1078_RS15710 0.85 +1.8 258,875 + HMPREF1078_RS15710 0.85 +0.4 258,876 - HMPREF1078_RS15710 0.85 +2.1 258,876 - HMPREF1078_RS15710 0.85 -1.2 258,894 - HMPREF1078_RS15710 0.87 +0.2 259,063 + -0.7 259,079 + +1.8 259,139 + +0.2 259,152 - -0.3 259,152 - -0.5 259,182 + HMPREF1078_RS15715 0.15 +0.7 259,202 + HMPREF1078_RS15715 0.20 +0.1 259,203 + HMPREF1078_RS15715 0.20 +0.7 259,204 - HMPREF1078_RS15715 0.21 -2.1 259,204 - HMPREF1078_RS15715 0.21 -0.8 259,205 + HMPREF1078_RS15715 0.21 -0.1 259,206 - HMPREF1078_RS15715 0.21 -2.2 259,206 - HMPREF1078_RS15715 0.21 -1.7 259,216 - HMPREF1078_RS15715 0.24 +0.2 259,297 + HMPREF1078_RS15715 0.43 -3.1 259,361 - HMPREF1078_RS15715 0.58 -2.0 259,435 + HMPREF1078_RS15715 0.76 -0.8 259,436 + HMPREF1078_RS15715 0.76 +0.9 259,437 - HMPREF1078_RS15715 0.76 -0.1 259,437 - HMPREF1078_RS15715 0.76 -0.6 259,470 + HMPREF1078_RS15715 0.84 -0.6 259,501 + +0.5 259,501 + -1.8 259,502 - +0.6 259,551 + +0.6 259,554 + +0.2 259,554 + -1.2 259,556 + -2.0 259,557 - -2.6 259,567 + -1.3 259,568 - +1.4 259,568 - -1.7 259,569 + +0.9 259,610 + HMPREF1078_RS20075 0.22 +0.9 259,611 - HMPREF1078_RS20075 0.23 +0.2 259,629 + HMPREF1078_RS20075 0.37 -0.5 259,630 - HMPREF1078_RS20075 0.38 -0.9 259,639 - HMPREF1078_RS20075 0.45 -1.4 259,647 + HMPREF1078_RS20075 0.52 -2.1 259,647 + HMPREF1078_RS20075 0.52 -2.1 259,657 - HMPREF1078_RS20075 0.60 -0.0 259,657 - HMPREF1078_RS20075 0.60 -1.4 259,709 - -1.3 259,730 + +1.8 259,736 - +0.3 259,743 - -0.8 259,750 - -0.7 259,779 - -1.4 259,848 - -2.6 259,848 - +0.6 259,864 + +1.9 259,933 + -0.9 259,934 - +2.2 259,936 + -1.2 259,936 + -0.1 259,936 + +2.3 259,944 + -1.7 259,944 + -1.3 259,944 + +0.1 259,944 + +0.4 259,944 + +0.5 259,944 + -0.9 259,944 + -0.3 259,944 + +2.0 259,944 + +1.7 259,944 + -1.2 259,945 - +0.8 259,965 + +1.3 259,966 - -0.2 259,969 - -0.9 259,988 - -3.2 259,988 - +0.8 259,993 + -0.8 259,997 - -0.1 260,050 + HMPREF1078_RS15720 0.11 -2.4 260,100 + HMPREF1078_RS15720 0.17 +0.4 260,156 + HMPREF1078_RS15720 0.23 -0.6 260,165 + HMPREF1078_RS15720 0.24 -1.7 260,224 + HMPREF1078_RS15720 0.30 +0.8 260,225 - HMPREF1078_RS15720 0.30 -2.1 260,287 + HMPREF1078_RS15720 0.37 +0.9 260,288 - HMPREF1078_RS15720 0.37 -0.1 260,317 + HMPREF1078_RS15720 0.40 +0.1 260,320 - HMPREF1078_RS15720 0.41 -1.4 260,328 - HMPREF1078_RS15720 0.42 -0.2 260,329 + HMPREF1078_RS15720 0.42 +0.4 260,354 - HMPREF1078_RS15720 0.45 -1.6 260,405 - HMPREF1078_RS15720 0.50 +0.7 260,406 + HMPREF1078_RS15720 0.50 +0.8 260,406 + HMPREF1078_RS15720 0.50 +0.2 260,452 - HMPREF1078_RS15720 0.55 +0.9 260,494 + HMPREF1078_RS15720 0.60 -2.5 260,494 + HMPREF1078_RS15720 0.60 +1.2 260,497 - HMPREF1078_RS15720 0.60 -1.7 260,503 - HMPREF1078_RS15720 0.61 -0.1
Or see this region's nucleotide sequence