Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS13200

Experiment: .-Glucan from yeast 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS13195 and HMPREF1078_RS13200 are separated by 6 nucleotidesHMPREF1078_RS13200 and HMPREF1078_RS13205 are separated by 482 nucleotides HMPREF1078_RS13195: HMPREF1078_RS13195 - TlpA disulfide reductase family protein, at 65,555 to 67,006 _RS13195 HMPREF1078_RS13200: HMPREF1078_RS13200 - hypothetical protein, at 67,013 to 69,613 _RS13200 HMPREF1078_RS13205: HMPREF1078_RS13205 - IS3 family transposase, at 70,096 to 71,004 _RS13205 Position (kb) 67 68 69 70Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 66.015 kb on + strand, within HMPREF1078_RS13195at 66.015 kb on + strand, within HMPREF1078_RS13195at 66.015 kb on + strand, within HMPREF1078_RS13195at 66.016 kb on - strand, within HMPREF1078_RS13195at 66.118 kb on - strand, within HMPREF1078_RS13195at 66.118 kb on - strand, within HMPREF1078_RS13195at 66.118 kb on - strand, within HMPREF1078_RS13195at 66.118 kb on - strand, within HMPREF1078_RS13195at 66.253 kb on + strand, within HMPREF1078_RS13195at 66.308 kb on + strand, within HMPREF1078_RS13195at 66.308 kb on + strand, within HMPREF1078_RS13195at 66.309 kb on - strand, within HMPREF1078_RS13195at 66.310 kb on + strand, within HMPREF1078_RS13195at 66.311 kb on - strand, within HMPREF1078_RS13195at 66.311 kb on - strand, within HMPREF1078_RS13195at 66.340 kb on - strand, within HMPREF1078_RS13195at 66.365 kb on + strand, within HMPREF1078_RS13195at 66.492 kb on + strand, within HMPREF1078_RS13195at 66.492 kb on + strand, within HMPREF1078_RS13195at 66.634 kb on + strand, within HMPREF1078_RS13195at 66.722 kb on + strand, within HMPREF1078_RS13195at 66.723 kb on - strand, within HMPREF1078_RS13195at 66.723 kb on - strand, within HMPREF1078_RS13195at 66.829 kb on + strand, within HMPREF1078_RS13195at 66.830 kb on - strand, within HMPREF1078_RS13195at 66.830 kb on - strand, within HMPREF1078_RS13195at 66.868 kb on + strandat 66.868 kb on + strandat 66.893 kb on + strandat 66.893 kb on + strandat 66.895 kb on + strandat 66.933 kb on + strandat 66.934 kb on - strandat 66.934 kb on - strandat 67.020 kb on + strandat 67.024 kb on + strandat 67.024 kb on + strandat 67.102 kb on + strandat 67.102 kb on + strandat 67.137 kb on + strandat 67.174 kb on - strandat 67.174 kb on - strandat 67.175 kb on + strandat 67.175 kb on + strandat 67.176 kb on - strandat 67.176 kb on - strandat 67.192 kb on + strandat 67.193 kb on - strandat 67.193 kb on - strandat 67.233 kb on - strandat 67.233 kb on - strandat 67.283 kb on + strand, within HMPREF1078_RS13200at 67.283 kb on + strand, within HMPREF1078_RS13200at 67.283 kb on + strand, within HMPREF1078_RS13200at 67.284 kb on - strand, within HMPREF1078_RS13200at 67.333 kb on - strand, within HMPREF1078_RS13200at 67.380 kb on + strand, within HMPREF1078_RS13200at 67.388 kb on + strand, within HMPREF1078_RS13200at 67.408 kb on - strand, within HMPREF1078_RS13200at 67.408 kb on - strand, within HMPREF1078_RS13200at 67.418 kb on - strand, within HMPREF1078_RS13200at 67.424 kb on + strand, within HMPREF1078_RS13200at 67.425 kb on - strand, within HMPREF1078_RS13200at 67.425 kb on - strand, within HMPREF1078_RS13200at 67.425 kb on - strand, within HMPREF1078_RS13200at 67.425 kb on - strand, within HMPREF1078_RS13200at 67.427 kb on - strand, within HMPREF1078_RS13200at 67.539 kb on - strand, within HMPREF1078_RS13200at 67.593 kb on - strand, within HMPREF1078_RS13200at 67.757 kb on + strand, within HMPREF1078_RS13200at 67.758 kb on - strand, within HMPREF1078_RS13200at 67.761 kb on + strand, within HMPREF1078_RS13200at 67.762 kb on - strand, within HMPREF1078_RS13200at 67.779 kb on + strand, within HMPREF1078_RS13200at 67.869 kb on + strand, within HMPREF1078_RS13200at 67.869 kb on + strand, within HMPREF1078_RS13200at 67.869 kb on + strand, within HMPREF1078_RS13200at 67.870 kb on - strand, within HMPREF1078_RS13200at 67.894 kb on + strand, within HMPREF1078_RS13200at 67.962 kb on + strand, within HMPREF1078_RS13200at 67.964 kb on + strand, within HMPREF1078_RS13200at 67.976 kb on - strand, within HMPREF1078_RS13200at 68.117 kb on - strand, within HMPREF1078_RS13200at 68.154 kb on - strand, within HMPREF1078_RS13200at 68.319 kb on + strand, within HMPREF1078_RS13200at 68.319 kb on + strand, within HMPREF1078_RS13200at 68.319 kb on + strand, within HMPREF1078_RS13200at 68.319 kb on + strand, within HMPREF1078_RS13200at 68.320 kb on - strand, within HMPREF1078_RS13200at 68.320 kb on - strand, within HMPREF1078_RS13200at 68.320 kb on - strand, within HMPREF1078_RS13200at 68.353 kb on + strand, within HMPREF1078_RS13200at 68.353 kb on + strand, within HMPREF1078_RS13200at 68.354 kb on - strand, within HMPREF1078_RS13200at 68.533 kb on - strand, within HMPREF1078_RS13200at 68.585 kb on - strand, within HMPREF1078_RS13200at 68.585 kb on - strand, within HMPREF1078_RS13200at 68.615 kb on - strand, within HMPREF1078_RS13200at 68.747 kb on + strand, within HMPREF1078_RS13200at 68.773 kb on + strand, within HMPREF1078_RS13200at 68.774 kb on - strand, within HMPREF1078_RS13200at 68.774 kb on - strand, within HMPREF1078_RS13200at 68.830 kb on + strand, within HMPREF1078_RS13200at 68.830 kb on + strand, within HMPREF1078_RS13200at 68.831 kb on - strand, within HMPREF1078_RS13200at 68.854 kb on - strand, within HMPREF1078_RS13200at 68.854 kb on - strand, within HMPREF1078_RS13200at 68.854 kb on - strand, within HMPREF1078_RS13200at 68.854 kb on - strand, within HMPREF1078_RS13200at 68.865 kb on - strand, within HMPREF1078_RS13200at 68.993 kb on + strand, within HMPREF1078_RS13200at 68.993 kb on + strand, within HMPREF1078_RS13200at 69.071 kb on - strand, within HMPREF1078_RS13200at 69.071 kb on - strand, within HMPREF1078_RS13200at 69.071 kb on - strand, within HMPREF1078_RS13200at 69.119 kb on + strand, within HMPREF1078_RS13200at 69.161 kb on + strand, within HMPREF1078_RS13200at 69.162 kb on - strand, within HMPREF1078_RS13200at 69.169 kb on + strand, within HMPREF1078_RS13200at 69.170 kb on - strand, within HMPREF1078_RS13200at 69.170 kb on - strand, within HMPREF1078_RS13200at 69.173 kb on + strand, within HMPREF1078_RS13200at 69.173 kb on + strand, within HMPREF1078_RS13200at 69.191 kb on + strand, within HMPREF1078_RS13200at 69.191 kb on + strand, within HMPREF1078_RS13200at 69.192 kb on - strand, within HMPREF1078_RS13200at 69.193 kb on + strand, within HMPREF1078_RS13200at 69.194 kb on - strand, within HMPREF1078_RS13200at 69.196 kb on + strand, within HMPREF1078_RS13200at 69.197 kb on - strand, within HMPREF1078_RS13200at 69.197 kb on - strand, within HMPREF1078_RS13200at 69.197 kb on - strand, within HMPREF1078_RS13200at 69.197 kb on - strand, within HMPREF1078_RS13200at 69.226 kb on + strand, within HMPREF1078_RS13200at 69.239 kb on - strand, within HMPREF1078_RS13200at 69.295 kb on + strand, within HMPREF1078_RS13200at 69.295 kb on + strand, within HMPREF1078_RS13200at 69.305 kb on - strand, within HMPREF1078_RS13200at 69.310 kb on - strand, within HMPREF1078_RS13200at 69.361 kb on + strandat 69.404 kb on - strandat 69.404 kb on - strandat 69.442 kb on - strandat 69.469 kb on + strandat 69.519 kb on - strandat 69.547 kb on + strandat 69.547 kb on + strandat 69.548 kb on - strandat 69.616 kb on - strandat 69.616 kb on - strandat 69.635 kb on + strandat 69.636 kb on - strandat 69.692 kb on - strandat 69.692 kb on - strandat 69.752 kb on - strandat 69.752 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction .-Glucan from yeast 2.5 mg/mL (C)
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66,015 + HMPREF1078_RS13195 0.32 +0.4
66,015 + HMPREF1078_RS13195 0.32 +2.4
66,015 + HMPREF1078_RS13195 0.32 -1.3
66,016 - HMPREF1078_RS13195 0.32 -0.3
66,118 - HMPREF1078_RS13195 0.39 -0.3
66,118 - HMPREF1078_RS13195 0.39 +1.2
66,118 - HMPREF1078_RS13195 0.39 +0.7
66,118 - HMPREF1078_RS13195 0.39 +0.1
66,253 + HMPREF1078_RS13195 0.48 +1.4
66,308 + HMPREF1078_RS13195 0.52 +0.0
66,308 + HMPREF1078_RS13195 0.52 +0.2
66,309 - HMPREF1078_RS13195 0.52 +1.0
66,310 + HMPREF1078_RS13195 0.52 -1.7
66,311 - HMPREF1078_RS13195 0.52 +0.3
66,311 - HMPREF1078_RS13195 0.52 +1.3
66,340 - HMPREF1078_RS13195 0.54 +0.4
66,365 + HMPREF1078_RS13195 0.56 -3.7
66,492 + HMPREF1078_RS13195 0.65 +1.4
66,492 + HMPREF1078_RS13195 0.65 -0.3
66,634 + HMPREF1078_RS13195 0.74 -2.3
66,722 + HMPREF1078_RS13195 0.80 +0.4
66,723 - HMPREF1078_RS13195 0.80 +0.6
66,723 - HMPREF1078_RS13195 0.80 -0.4
66,829 + HMPREF1078_RS13195 0.88 +0.8
66,830 - HMPREF1078_RS13195 0.88 +0.1
66,830 - HMPREF1078_RS13195 0.88 +1.5
66,868 + -0.1
66,868 + +0.3
66,893 + -2.1
66,893 + +0.9
66,895 + +1.4
66,933 + -0.6
66,934 - -1.7
66,934 - -2.9
67,020 + -3.9
67,024 + +0.0
67,024 + -0.8
67,102 + +0.9
67,102 + +0.4
67,137 + +0.6
67,174 - +0.4
67,174 - +1.1
67,175 + +0.8
67,175 + -0.6
67,176 - +0.4
67,176 - +0.4
67,192 + -1.1
67,193 - -0.6
67,193 - -0.8
67,233 - -0.7
67,233 - +0.2
67,283 + HMPREF1078_RS13200 0.10 -2.0
67,283 + HMPREF1078_RS13200 0.10 +0.7
67,283 + HMPREF1078_RS13200 0.10 -0.7
67,284 - HMPREF1078_RS13200 0.10 +0.5
67,333 - HMPREF1078_RS13200 0.12 +0.7
67,380 + HMPREF1078_RS13200 0.14 -0.8
67,388 + HMPREF1078_RS13200 0.14 -0.2
67,408 - HMPREF1078_RS13200 0.15 -3.5
67,408 - HMPREF1078_RS13200 0.15 +0.7
67,418 - HMPREF1078_RS13200 0.16 +0.0
67,424 + HMPREF1078_RS13200 0.16 -1.5
67,425 - HMPREF1078_RS13200 0.16 -1.3
67,425 - HMPREF1078_RS13200 0.16 -0.7
67,425 - HMPREF1078_RS13200 0.16 -1.3
67,425 - HMPREF1078_RS13200 0.16 -2.2
67,427 - HMPREF1078_RS13200 0.16 -3.1
67,539 - HMPREF1078_RS13200 0.20 -1.6
67,593 - HMPREF1078_RS13200 0.22 -0.3
67,757 + HMPREF1078_RS13200 0.29 -1.8
67,758 - HMPREF1078_RS13200 0.29 +1.9
67,761 + HMPREF1078_RS13200 0.29 -0.7
67,762 - HMPREF1078_RS13200 0.29 +0.9
67,779 + HMPREF1078_RS13200 0.29 -0.3
67,869 + HMPREF1078_RS13200 0.33 +0.0
67,869 + HMPREF1078_RS13200 0.33 -0.0
67,869 + HMPREF1078_RS13200 0.33 +0.6
67,870 - HMPREF1078_RS13200 0.33 -0.2
67,894 + HMPREF1078_RS13200 0.34 -1.1
67,962 + HMPREF1078_RS13200 0.36 -0.2
67,964 + HMPREF1078_RS13200 0.37 -0.1
67,976 - HMPREF1078_RS13200 0.37 -0.8
68,117 - HMPREF1078_RS13200 0.42 -0.1
68,154 - HMPREF1078_RS13200 0.44 -1.5
68,319 + HMPREF1078_RS13200 0.50 -0.0
68,319 + HMPREF1078_RS13200 0.50 +1.0
68,319 + HMPREF1078_RS13200 0.50 -2.2
68,319 + HMPREF1078_RS13200 0.50 -0.4
68,320 - HMPREF1078_RS13200 0.50 +0.1
68,320 - HMPREF1078_RS13200 0.50 +0.4
68,320 - HMPREF1078_RS13200 0.50 -0.3
68,353 + HMPREF1078_RS13200 0.52 +0.6
68,353 + HMPREF1078_RS13200 0.52 +0.7
68,354 - HMPREF1078_RS13200 0.52 +0.9
68,533 - HMPREF1078_RS13200 0.58 +0.1
68,585 - HMPREF1078_RS13200 0.60 -0.3
68,585 - HMPREF1078_RS13200 0.60 +0.7
68,615 - HMPREF1078_RS13200 0.62 +0.4
68,747 + HMPREF1078_RS13200 0.67 -1.2
68,773 + HMPREF1078_RS13200 0.68 -0.3
68,774 - HMPREF1078_RS13200 0.68 -1.3
68,774 - HMPREF1078_RS13200 0.68 -2.7
68,830 + HMPREF1078_RS13200 0.70 -2.6
68,830 + HMPREF1078_RS13200 0.70 -0.2
68,831 - HMPREF1078_RS13200 0.70 +1.5
68,854 - HMPREF1078_RS13200 0.71 +0.1
68,854 - HMPREF1078_RS13200 0.71 -0.2
68,854 - HMPREF1078_RS13200 0.71 +1.0
68,854 - HMPREF1078_RS13200 0.71 -0.3
68,865 - HMPREF1078_RS13200 0.71 +2.1
68,993 + HMPREF1078_RS13200 0.76 +1.3
68,993 + HMPREF1078_RS13200 0.76 +0.1
69,071 - HMPREF1078_RS13200 0.79 -0.7
69,071 - HMPREF1078_RS13200 0.79 +2.5
69,071 - HMPREF1078_RS13200 0.79 +0.3
69,119 + HMPREF1078_RS13200 0.81 -0.1
69,161 + HMPREF1078_RS13200 0.83 +0.6
69,162 - HMPREF1078_RS13200 0.83 +1.3
69,169 + HMPREF1078_RS13200 0.83 +1.0
69,170 - HMPREF1078_RS13200 0.83 -1.7
69,170 - HMPREF1078_RS13200 0.83 -0.3
69,173 + HMPREF1078_RS13200 0.83 +0.9
69,173 + HMPREF1078_RS13200 0.83 -0.1
69,191 + HMPREF1078_RS13200 0.84 -0.4
69,191 + HMPREF1078_RS13200 0.84 +1.2
69,192 - HMPREF1078_RS13200 0.84 +1.4
69,193 + HMPREF1078_RS13200 0.84 +0.2
69,194 - HMPREF1078_RS13200 0.84 -1.3
69,196 + HMPREF1078_RS13200 0.84 -1.1
69,197 - HMPREF1078_RS13200 0.84 -3.0
69,197 - HMPREF1078_RS13200 0.84 -2.9
69,197 - HMPREF1078_RS13200 0.84 -1.7
69,197 - HMPREF1078_RS13200 0.84 +1.4
69,226 + HMPREF1078_RS13200 0.85 -0.5
69,239 - HMPREF1078_RS13200 0.86 +0.4
69,295 + HMPREF1078_RS13200 0.88 -2.0
69,295 + HMPREF1078_RS13200 0.88 -0.1
69,305 - HMPREF1078_RS13200 0.88 -1.8
69,310 - HMPREF1078_RS13200 0.88 +1.3
69,361 + +0.2
69,404 - -0.4
69,404 - +0.8
69,442 - -2.6
69,469 + +0.1
69,519 - -0.4
69,547 + -0.5
69,547 + +1.3
69,548 - +0.4
69,616 - +1.4
69,616 - -0.6
69,635 + -2.5
69,636 - +1.1
69,692 - -1.7
69,692 - -3.0
69,752 - -0.3
69,752 - -1.6

Or see this region's nucleotide sequence