Experiment: .-Glucan from yeast 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07535 and HMPREF1078_RS07540 are separated by 340 nucleotides HMPREF1078_RS07540 and HMPREF1078_RS07545 are separated by 109 nucleotides
HMPREF1078_RS07535: HMPREF1078_RS07535 - glycyl radical protein, at 39,126 to 41,564
_RS07535
HMPREF1078_RS07540: HMPREF1078_RS07540 - sigma-54 dependent transcriptional regulator, at 41,905 to 43,269
_RS07540
HMPREF1078_RS07545: HMPREF1078_RS07545 - DUF418 domain-containing protein, at 43,379 to 44,551
_RS07545
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 40.965 kb on - strand, within HMPREF1078_RS07535 at 40.991 kb on - strand, within HMPREF1078_RS07535 at 40.995 kb on - strand, within HMPREF1078_RS07535 at 40.996 kb on + strand, within HMPREF1078_RS07535 at 40.997 kb on - strand, within HMPREF1078_RS07535 at 41.019 kb on - strand, within HMPREF1078_RS07535 at 41.019 kb on - strand, within HMPREF1078_RS07535 at 41.069 kb on - strand, within HMPREF1078_RS07535 at 41.091 kb on + strand, within HMPREF1078_RS07535 at 41.105 kb on + strand, within HMPREF1078_RS07535 at 41.106 kb on - strand, within HMPREF1078_RS07535 at 41.155 kb on + strand, within HMPREF1078_RS07535 at 41.185 kb on + strand, within HMPREF1078_RS07535 at 41.315 kb on - strand, within HMPREF1078_RS07535 at 41.315 kb on - strand, within HMPREF1078_RS07535 at 41.331 kb on - strand at 41.556 kb on + strand at 41.558 kb on + strand at 41.564 kb on + strand at 41.564 kb on + strand at 41.564 kb on + strand at 41.564 kb on + strand at 41.564 kb on + strand at 41.564 kb on + strand at 41.565 kb on - strand at 41.565 kb on - strand at 41.568 kb on - strand at 41.569 kb on + strand at 41.569 kb on + strand at 41.570 kb on - strand at 41.571 kb on + strand at 41.633 kb on + strand at 41.665 kb on + strand at 41.665 kb on + strand at 41.666 kb on - strand at 41.666 kb on - strand at 41.669 kb on - strand at 41.669 kb on - strand at 41.751 kb on - strand at 41.751 kb on - strand at 41.790 kb on - strand at 41.814 kb on + strand at 41.814 kb on + strand at 41.872 kb on - strand at 41.931 kb on + strand at 41.931 kb on + strand at 41.931 kb on + strand at 41.932 kb on - strand at 41.983 kb on - strand at 42.111 kb on + strand, within HMPREF1078_RS07540 at 42.114 kb on - strand, within HMPREF1078_RS07540 at 42.114 kb on - strand, within HMPREF1078_RS07540 at 42.135 kb on + strand, within HMPREF1078_RS07540 at 42.136 kb on - strand, within HMPREF1078_RS07540 at 42.136 kb on - strand, within HMPREF1078_RS07540 at 42.140 kb on + strand, within HMPREF1078_RS07540 at 42.140 kb on + strand, within HMPREF1078_RS07540 at 42.140 kb on + strand, within HMPREF1078_RS07540 at 42.141 kb on - strand, within HMPREF1078_RS07540 at 42.141 kb on - strand, within HMPREF1078_RS07540 at 42.186 kb on - strand, within HMPREF1078_RS07540 at 42.225 kb on + strand, within HMPREF1078_RS07540 at 42.228 kb on + strand, within HMPREF1078_RS07540 at 42.228 kb on + strand, within HMPREF1078_RS07540 at 42.228 kb on + strand, within HMPREF1078_RS07540 at 42.229 kb on - strand, within HMPREF1078_RS07540 at 42.346 kb on + strand, within HMPREF1078_RS07540 at 42.346 kb on + strand, within HMPREF1078_RS07540 at 42.347 kb on - strand, within HMPREF1078_RS07540 at 42.409 kb on - strand, within HMPREF1078_RS07540 at 42.442 kb on - strand, within HMPREF1078_RS07540 at 42.487 kb on + strand, within HMPREF1078_RS07540 at 42.487 kb on + strand, within HMPREF1078_RS07540 at 42.488 kb on - strand, within HMPREF1078_RS07540 at 42.494 kb on - strand, within HMPREF1078_RS07540 at 42.494 kb on - strand, within HMPREF1078_RS07540 at 42.494 kb on - strand, within HMPREF1078_RS07540 at 42.501 kb on - strand, within HMPREF1078_RS07540 at 42.535 kb on - strand, within HMPREF1078_RS07540 at 42.535 kb on - strand, within HMPREF1078_RS07540 at 42.568 kb on - strand, within HMPREF1078_RS07540 at 42.577 kb on - strand, within HMPREF1078_RS07540 at 42.577 kb on - strand, within HMPREF1078_RS07540 at 42.660 kb on + strand, within HMPREF1078_RS07540 at 42.675 kb on + strand, within HMPREF1078_RS07540 at 42.676 kb on - strand, within HMPREF1078_RS07540 at 42.710 kb on + strand, within HMPREF1078_RS07540 at 42.711 kb on - strand, within HMPREF1078_RS07540 at 42.724 kb on - strand, within HMPREF1078_RS07540 at 42.753 kb on + strand, within HMPREF1078_RS07540 at 42.753 kb on + strand, within HMPREF1078_RS07540 at 42.753 kb on + strand, within HMPREF1078_RS07540 at 42.753 kb on + strand, within HMPREF1078_RS07540 at 42.754 kb on - strand, within HMPREF1078_RS07540 at 42.754 kb on - strand, within HMPREF1078_RS07540 at 42.754 kb on - strand, within HMPREF1078_RS07540 at 42.754 kb on - strand, within HMPREF1078_RS07540 at 42.754 kb on - strand, within HMPREF1078_RS07540 at 42.754 kb on - strand, within HMPREF1078_RS07540 at 42.775 kb on + strand, within HMPREF1078_RS07540 at 42.775 kb on + strand, within HMPREF1078_RS07540 at 42.775 kb on + strand, within HMPREF1078_RS07540 at 42.775 kb on + strand, within HMPREF1078_RS07540 at 42.775 kb on + strand, within HMPREF1078_RS07540 at 42.775 kb on + strand, within HMPREF1078_RS07540 at 42.775 kb on + strand, within HMPREF1078_RS07540 at 42.776 kb on - strand, within HMPREF1078_RS07540 at 42.776 kb on - strand, within HMPREF1078_RS07540 at 42.776 kb on - strand, within HMPREF1078_RS07540 at 42.786 kb on - strand, within HMPREF1078_RS07540 at 42.822 kb on - strand, within HMPREF1078_RS07540 at 42.822 kb on - strand, within HMPREF1078_RS07540 at 42.822 kb on - strand, within HMPREF1078_RS07540 at 42.919 kb on + strand, within HMPREF1078_RS07540 at 42.919 kb on + strand, within HMPREF1078_RS07540 at 42.941 kb on - strand, within HMPREF1078_RS07540 at 42.972 kb on + strand, within HMPREF1078_RS07540 at 42.972 kb on + strand, within HMPREF1078_RS07540 at 42.972 kb on + strand, within HMPREF1078_RS07540 at 42.973 kb on - strand, within HMPREF1078_RS07540 at 43.016 kb on - strand, within HMPREF1078_RS07540 at 43.016 kb on - strand, within HMPREF1078_RS07540 at 43.177 kb on + strand at 43.237 kb on + strand at 43.237 kb on + strand at 43.239 kb on + strand at 43.240 kb on - strand at 43.250 kb on - strand at 43.269 kb on + strand at 43.270 kb on - strand at 43.290 kb on - strand at 43.549 kb on + strand, within HMPREF1078_RS07545 at 43.560 kb on - strand, within HMPREF1078_RS07545 at 43.560 kb on - strand, within HMPREF1078_RS07545 at 43.560 kb on - strand, within HMPREF1078_RS07545 at 43.565 kb on - strand, within HMPREF1078_RS07545 at 43.579 kb on - strand, within HMPREF1078_RS07545 at 43.579 kb on - strand, within HMPREF1078_RS07545 at 43.628 kb on - strand, within HMPREF1078_RS07545 at 43.776 kb on + strand, within HMPREF1078_RS07545 at 43.776 kb on + strand, within HMPREF1078_RS07545 at 44.011 kb on + strand, within HMPREF1078_RS07545 at 44.011 kb on + strand, within HMPREF1078_RS07545 at 44.012 kb on - strand, within HMPREF1078_RS07545 at 44.012 kb on - strand, within HMPREF1078_RS07545 at 44.012 kb on - strand, within HMPREF1078_RS07545 at 44.012 kb on - strand, within HMPREF1078_RS07545 at 44.020 kb on + strand, within HMPREF1078_RS07545 at 44.052 kb on + strand, within HMPREF1078_RS07545 at 44.053 kb on - strand, within HMPREF1078_RS07545 at 44.053 kb on - strand, within HMPREF1078_RS07545 at 44.114 kb on - strand, within HMPREF1078_RS07545 at 44.177 kb on + strand, within HMPREF1078_RS07545 at 44.192 kb on + strand, within HMPREF1078_RS07545 at 44.192 kb on + strand, within HMPREF1078_RS07545 at 44.195 kb on + strand, within HMPREF1078_RS07545
Per-strain Table
Position Strand Gene LocusTag Fraction .-Glucan from yeast 2.5 mg/mL (C) remove 40,965 - HMPREF1078_RS07535 0.75 -0.3 40,991 - HMPREF1078_RS07535 0.76 -0.1 40,995 - HMPREF1078_RS07535 0.77 -1.8 40,996 + HMPREF1078_RS07535 0.77 +1.2 40,997 - HMPREF1078_RS07535 0.77 +0.2 41,019 - HMPREF1078_RS07535 0.78 +0.2 41,019 - HMPREF1078_RS07535 0.78 -0.5 41,069 - HMPREF1078_RS07535 0.80 -0.4 41,091 + HMPREF1078_RS07535 0.81 -0.2 41,105 + HMPREF1078_RS07535 0.81 +0.2 41,106 - HMPREF1078_RS07535 0.81 -0.9 41,155 + HMPREF1078_RS07535 0.83 -1.5 41,185 + HMPREF1078_RS07535 0.84 -1.7 41,315 - HMPREF1078_RS07535 0.90 +0.5 41,315 - HMPREF1078_RS07535 0.90 +0.6 41,331 - +1.8 41,556 + -1.2 41,558 + -1.5 41,564 + +0.7 41,564 + -1.6 41,564 + -0.4 41,564 + -0.0 41,564 + +0.2 41,564 + +1.5 41,565 - -3.5 41,565 - +1.8 41,568 - +1.8 41,569 + -0.7 41,569 + -2.6 41,570 - +1.1 41,571 + -0.7 41,633 + -0.4 41,665 + -1.0 41,665 + -0.3 41,666 - +1.2 41,666 - +0.6 41,669 - +0.5 41,669 - -0.1 41,751 - -0.5 41,751 - +0.7 41,790 - -1.0 41,814 + -0.7 41,814 + -1.2 41,872 - -0.8 41,931 + +0.0 41,931 + -0.6 41,931 + -1.0 41,932 - +1.2 41,983 - +0.3 42,111 + HMPREF1078_RS07540 0.15 -1.6 42,114 - HMPREF1078_RS07540 0.15 +1.2 42,114 - HMPREF1078_RS07540 0.15 -2.2 42,135 + HMPREF1078_RS07540 0.17 -0.9 42,136 - HMPREF1078_RS07540 0.17 -0.7 42,136 - HMPREF1078_RS07540 0.17 +0.7 42,140 + HMPREF1078_RS07540 0.17 -0.1 42,140 + HMPREF1078_RS07540 0.17 -1.4 42,140 + HMPREF1078_RS07540 0.17 +0.2 42,141 - HMPREF1078_RS07540 0.17 -1.5 42,141 - HMPREF1078_RS07540 0.17 +1.3 42,186 - HMPREF1078_RS07540 0.21 -2.0 42,225 + HMPREF1078_RS07540 0.23 +0.2 42,228 + HMPREF1078_RS07540 0.24 -2.5 42,228 + HMPREF1078_RS07540 0.24 +1.3 42,228 + HMPREF1078_RS07540 0.24 -1.1 42,229 - HMPREF1078_RS07540 0.24 -1.1 42,346 + HMPREF1078_RS07540 0.32 -1.2 42,346 + HMPREF1078_RS07540 0.32 -4.0 42,347 - HMPREF1078_RS07540 0.32 -1.6 42,409 - HMPREF1078_RS07540 0.37 -2.0 42,442 - HMPREF1078_RS07540 0.39 +0.1 42,487 + HMPREF1078_RS07540 0.43 +0.3 42,487 + HMPREF1078_RS07540 0.43 -2.2 42,488 - HMPREF1078_RS07540 0.43 -0.4 42,494 - HMPREF1078_RS07540 0.43 -2.8 42,494 - HMPREF1078_RS07540 0.43 -0.4 42,494 - HMPREF1078_RS07540 0.43 +1.0 42,501 - HMPREF1078_RS07540 0.44 -2.3 42,535 - HMPREF1078_RS07540 0.46 -2.3 42,535 - HMPREF1078_RS07540 0.46 -0.9 42,568 - HMPREF1078_RS07540 0.49 +0.2 42,577 - HMPREF1078_RS07540 0.49 +1.2 42,577 - HMPREF1078_RS07540 0.49 +0.5 42,660 + HMPREF1078_RS07540 0.55 +0.5 42,675 + HMPREF1078_RS07540 0.56 -1.1 42,676 - HMPREF1078_RS07540 0.56 +1.6 42,710 + HMPREF1078_RS07540 0.59 +2.5 42,711 - HMPREF1078_RS07540 0.59 +1.1 42,724 - HMPREF1078_RS07540 0.60 +0.5 42,753 + HMPREF1078_RS07540 0.62 -0.8 42,753 + HMPREF1078_RS07540 0.62 +1.1 42,753 + HMPREF1078_RS07540 0.62 +0.1 42,753 + HMPREF1078_RS07540 0.62 -0.2 42,754 - HMPREF1078_RS07540 0.62 -3.1 42,754 - HMPREF1078_RS07540 0.62 -0.4 42,754 - HMPREF1078_RS07540 0.62 -2.2 42,754 - HMPREF1078_RS07540 0.62 -0.0 42,754 - HMPREF1078_RS07540 0.62 -1.4 42,754 - HMPREF1078_RS07540 0.62 +0.1 42,775 + HMPREF1078_RS07540 0.64 +0.5 42,775 + HMPREF1078_RS07540 0.64 -3.0 42,775 + HMPREF1078_RS07540 0.64 -0.4 42,775 + HMPREF1078_RS07540 0.64 +1.3 42,775 + HMPREF1078_RS07540 0.64 -1.4 42,775 + HMPREF1078_RS07540 0.64 -0.6 42,775 + HMPREF1078_RS07540 0.64 +0.9 42,776 - HMPREF1078_RS07540 0.64 +0.8 42,776 - HMPREF1078_RS07540 0.64 -1.4 42,776 - HMPREF1078_RS07540 0.64 +0.8 42,786 - HMPREF1078_RS07540 0.65 +0.9 42,822 - HMPREF1078_RS07540 0.67 -1.1 42,822 - HMPREF1078_RS07540 0.67 -0.7 42,822 - HMPREF1078_RS07540 0.67 -0.0 42,919 + HMPREF1078_RS07540 0.74 -0.0 42,919 + HMPREF1078_RS07540 0.74 +0.1 42,941 - HMPREF1078_RS07540 0.76 -1.2 42,972 + HMPREF1078_RS07540 0.78 +0.2 42,972 + HMPREF1078_RS07540 0.78 +0.9 42,972 + HMPREF1078_RS07540 0.78 -0.6 42,973 - HMPREF1078_RS07540 0.78 +1.1 43,016 - HMPREF1078_RS07540 0.81 -2.7 43,016 - HMPREF1078_RS07540 0.81 +0.2 43,177 + -1.6 43,237 + -1.3 43,237 + -1.3 43,239 + -0.0 43,240 - -3.8 43,250 - -1.4 43,269 + +1.9 43,270 - -0.1 43,290 - +0.6 43,549 + HMPREF1078_RS07545 0.14 -0.8 43,560 - HMPREF1078_RS07545 0.15 +0.5 43,560 - HMPREF1078_RS07545 0.15 -1.3 43,560 - HMPREF1078_RS07545 0.15 +0.2 43,565 - HMPREF1078_RS07545 0.16 +0.5 43,579 - HMPREF1078_RS07545 0.17 -0.7 43,579 - HMPREF1078_RS07545 0.17 -2.6 43,628 - HMPREF1078_RS07545 0.21 -1.3 43,776 + HMPREF1078_RS07545 0.34 +0.5 43,776 + HMPREF1078_RS07545 0.34 +0.1 44,011 + HMPREF1078_RS07545 0.54 -1.0 44,011 + HMPREF1078_RS07545 0.54 +1.7 44,012 - HMPREF1078_RS07545 0.54 -2.2 44,012 - HMPREF1078_RS07545 0.54 +0.2 44,012 - HMPREF1078_RS07545 0.54 -1.1 44,012 - HMPREF1078_RS07545 0.54 +0.1 44,020 + HMPREF1078_RS07545 0.55 -0.8 44,052 + HMPREF1078_RS07545 0.57 -2.4 44,053 - HMPREF1078_RS07545 0.57 +1.4 44,053 - HMPREF1078_RS07545 0.57 -0.3 44,114 - HMPREF1078_RS07545 0.63 -0.1 44,177 + HMPREF1078_RS07545 0.68 -0.5 44,192 + HMPREF1078_RS07545 0.69 +0.2 44,192 + HMPREF1078_RS07545 0.69 -1.2 44,195 + HMPREF1078_RS07545 0.70 +0.7
Or see this region's nucleotide sequence