Experiment: Mucin from porcine stomach type III 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12210 and HMPREF1078_RS12215 are separated by 9 nucleotides HMPREF1078_RS12215 and HMPREF1078_RS12220 are separated by 21 nucleotides
HMPREF1078_RS12210: HMPREF1078_RS12210 - RagB/SusD family nutrient uptake outer membrane protein, at 423,735 to 425,189
_RS12210
HMPREF1078_RS12215: HMPREF1078_RS12215 - dihydrodipicolinate synthase family protein, at 425,199 to 426,137
_RS12215
HMPREF1078_RS12220: HMPREF1078_RS12220 - sialidase family protein, at 426,159 to 427,286
_RS12220
Position (kb) 425
426
427 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 424.280 kb on - strand, within HMPREF1078_RS12210 at 424.304 kb on - strand, within HMPREF1078_RS12210 at 424.316 kb on + strand, within HMPREF1078_RS12210 at 424.316 kb on + strand, within HMPREF1078_RS12210 at 424.316 kb on + strand, within HMPREF1078_RS12210 at 424.317 kb on - strand, within HMPREF1078_RS12210 at 424.324 kb on + strand, within HMPREF1078_RS12210 at 424.358 kb on + strand, within HMPREF1078_RS12210 at 424.362 kb on - strand, within HMPREF1078_RS12210 at 424.362 kb on - strand, within HMPREF1078_RS12210 at 424.362 kb on - strand, within HMPREF1078_RS12210 at 424.362 kb on - strand, within HMPREF1078_RS12210 at 424.377 kb on + strand, within HMPREF1078_RS12210 at 424.377 kb on + strand, within HMPREF1078_RS12210 at 424.392 kb on + strand, within HMPREF1078_RS12210 at 424.392 kb on + strand, within HMPREF1078_RS12210 at 424.392 kb on + strand, within HMPREF1078_RS12210 at 424.392 kb on + strand, within HMPREF1078_RS12210 at 424.393 kb on - strand, within HMPREF1078_RS12210 at 424.400 kb on - strand, within HMPREF1078_RS12210 at 424.513 kb on + strand, within HMPREF1078_RS12210 at 424.514 kb on - strand, within HMPREF1078_RS12210 at 424.557 kb on + strand, within HMPREF1078_RS12210 at 424.558 kb on - strand, within HMPREF1078_RS12210 at 424.558 kb on - strand, within HMPREF1078_RS12210 at 424.558 kb on - strand, within HMPREF1078_RS12210 at 424.558 kb on - strand, within HMPREF1078_RS12210 at 424.559 kb on + strand, within HMPREF1078_RS12210 at 424.559 kb on + strand, within HMPREF1078_RS12210 at 424.560 kb on - strand, within HMPREF1078_RS12210 at 424.560 kb on - strand, within HMPREF1078_RS12210 at 424.560 kb on - strand, within HMPREF1078_RS12210 at 424.560 kb on - strand, within HMPREF1078_RS12210 at 424.582 kb on - strand, within HMPREF1078_RS12210 at 424.640 kb on + strand, within HMPREF1078_RS12210 at 424.663 kb on - strand, within HMPREF1078_RS12210 at 424.674 kb on + strand, within HMPREF1078_RS12210 at 424.675 kb on - strand, within HMPREF1078_RS12210 at 424.720 kb on + strand, within HMPREF1078_RS12210 at 424.775 kb on + strand, within HMPREF1078_RS12210 at 424.808 kb on + strand, within HMPREF1078_RS12210 at 424.808 kb on + strand, within HMPREF1078_RS12210 at 424.826 kb on - strand, within HMPREF1078_RS12210 at 424.831 kb on + strand, within HMPREF1078_RS12210 at 424.831 kb on + strand, within HMPREF1078_RS12210 at 424.831 kb on + strand, within HMPREF1078_RS12210 at 424.831 kb on + strand, within HMPREF1078_RS12210 at 424.831 kb on + strand, within HMPREF1078_RS12210 at 424.833 kb on + strand, within HMPREF1078_RS12210 at 424.833 kb on + strand, within HMPREF1078_RS12210 at 424.856 kb on - strand, within HMPREF1078_RS12210 at 424.856 kb on - strand, within HMPREF1078_RS12210 at 424.935 kb on + strand, within HMPREF1078_RS12210 at 424.936 kb on - strand, within HMPREF1078_RS12210 at 424.940 kb on + strand, within HMPREF1078_RS12210 at 424.953 kb on + strand, within HMPREF1078_RS12210 at 424.997 kb on - strand, within HMPREF1078_RS12210 at 425.035 kb on + strand, within HMPREF1078_RS12210 at 425.036 kb on - strand, within HMPREF1078_RS12210 at 425.066 kb on - strand at 425.066 kb on - strand at 425.066 kb on - strand at 425.119 kb on + strand at 425.119 kb on + strand at 425.120 kb on - strand at 425.147 kb on + strand at 425.164 kb on + strand at 425.164 kb on + strand at 425.164 kb on + strand at 425.165 kb on - strand at 425.165 kb on - strand at 425.198 kb on + strand at 425.198 kb on + strand at 425.199 kb on - strand at 425.199 kb on - strand at 425.199 kb on - strand at 425.199 kb on - strand at 425.199 kb on - strand at 425.199 kb on - strand at 425.216 kb on + strand at 425.216 kb on + strand at 425.276 kb on - strand at 425.280 kb on + strand at 425.303 kb on - strand, within HMPREF1078_RS12215 at 425.303 kb on - strand, within HMPREF1078_RS12215 at 425.303 kb on - strand, within HMPREF1078_RS12215 at 425.306 kb on + strand, within HMPREF1078_RS12215 at 425.314 kb on + strand, within HMPREF1078_RS12215 at 425.315 kb on - strand, within HMPREF1078_RS12215 at 425.315 kb on - strand, within HMPREF1078_RS12215 at 425.365 kb on - strand, within HMPREF1078_RS12215 at 425.405 kb on - strand, within HMPREF1078_RS12215 at 425.473 kb on + strand, within HMPREF1078_RS12215 at 425.474 kb on - strand, within HMPREF1078_RS12215 at 425.474 kb on - strand, within HMPREF1078_RS12215 at 425.480 kb on - strand, within HMPREF1078_RS12215 at 425.527 kb on + strand, within HMPREF1078_RS12215 at 425.528 kb on - strand, within HMPREF1078_RS12215 at 425.528 kb on - strand, within HMPREF1078_RS12215 at 425.528 kb on - strand, within HMPREF1078_RS12215 at 425.533 kb on + strand, within HMPREF1078_RS12215 at 425.675 kb on - strand, within HMPREF1078_RS12215 at 425.684 kb on + strand, within HMPREF1078_RS12215 at 425.684 kb on + strand, within HMPREF1078_RS12215 at 425.684 kb on + strand, within HMPREF1078_RS12215 at 425.685 kb on - strand, within HMPREF1078_RS12215 at 425.686 kb on + strand, within HMPREF1078_RS12215 at 425.686 kb on + strand, within HMPREF1078_RS12215 at 425.686 kb on + strand, within HMPREF1078_RS12215 at 425.686 kb on + strand, within HMPREF1078_RS12215 at 425.686 kb on + strand, within HMPREF1078_RS12215 at 425.687 kb on - strand, within HMPREF1078_RS12215 at 425.687 kb on - strand, within HMPREF1078_RS12215 at 425.687 kb on - strand, within HMPREF1078_RS12215 at 425.687 kb on - strand, within HMPREF1078_RS12215 at 425.687 kb on - strand, within HMPREF1078_RS12215 at 425.687 kb on - strand, within HMPREF1078_RS12215 at 425.741 kb on + strand, within HMPREF1078_RS12215 at 425.741 kb on + strand, within HMPREF1078_RS12215 at 425.898 kb on - strand, within HMPREF1078_RS12215 at 425.903 kb on + strand, within HMPREF1078_RS12215 at 425.903 kb on + strand, within HMPREF1078_RS12215 at 425.903 kb on - strand, within HMPREF1078_RS12215 at 425.927 kb on + strand, within HMPREF1078_RS12215 at 425.927 kb on + strand, within HMPREF1078_RS12215 at 425.927 kb on + strand, within HMPREF1078_RS12215 at 425.927 kb on + strand, within HMPREF1078_RS12215 at 425.928 kb on - strand, within HMPREF1078_RS12215 at 425.928 kb on - strand, within HMPREF1078_RS12215 at 425.953 kb on + strand, within HMPREF1078_RS12215 at 426.034 kb on + strand, within HMPREF1078_RS12215 at 426.034 kb on + strand, within HMPREF1078_RS12215 at 426.035 kb on - strand, within HMPREF1078_RS12215 at 426.035 kb on - strand, within HMPREF1078_RS12215 at 426.079 kb on - strand at 426.079 kb on - strand at 426.105 kb on + strand at 426.106 kb on - strand at 426.110 kb on + strand at 426.111 kb on - strand at 426.153 kb on + strand at 426.167 kb on + strand at 426.175 kb on + strand at 426.175 kb on + strand at 426.175 kb on + strand at 426.176 kb on - strand at 426.230 kb on + strand at 426.246 kb on + strand at 426.246 kb on + strand at 426.247 kb on - strand at 426.247 kb on - strand at 426.250 kb on + strand at 426.268 kb on - strand at 426.402 kb on - strand, within HMPREF1078_RS12220 at 426.423 kb on - strand, within HMPREF1078_RS12220 at 426.423 kb on - strand, within HMPREF1078_RS12220 at 426.423 kb on - strand, within HMPREF1078_RS12220 at 426.448 kb on + strand, within HMPREF1078_RS12220 at 426.448 kb on + strand, within HMPREF1078_RS12220 at 426.449 kb on - strand, within HMPREF1078_RS12220 at 426.449 kb on - strand, within HMPREF1078_RS12220 at 426.449 kb on - strand, within HMPREF1078_RS12220 at 426.472 kb on + strand, within HMPREF1078_RS12220 at 426.491 kb on + strand, within HMPREF1078_RS12220 at 426.491 kb on + strand, within HMPREF1078_RS12220 at 426.492 kb on - strand, within HMPREF1078_RS12220 at 426.557 kb on + strand, within HMPREF1078_RS12220 at 426.574 kb on + strand, within HMPREF1078_RS12220 at 426.694 kb on + strand, within HMPREF1078_RS12220 at 426.710 kb on + strand, within HMPREF1078_RS12220 at 426.711 kb on - strand, within HMPREF1078_RS12220 at 426.725 kb on - strand, within HMPREF1078_RS12220 at 426.725 kb on - strand, within HMPREF1078_RS12220 at 426.740 kb on + strand, within HMPREF1078_RS12220 at 426.741 kb on - strand, within HMPREF1078_RS12220 at 426.762 kb on + strand, within HMPREF1078_RS12220 at 426.762 kb on + strand, within HMPREF1078_RS12220 at 426.877 kb on + strand, within HMPREF1078_RS12220 at 426.894 kb on - strand, within HMPREF1078_RS12220 at 426.995 kb on + strand, within HMPREF1078_RS12220 at 427.020 kb on + strand, within HMPREF1078_RS12220 at 427.021 kb on - strand, within HMPREF1078_RS12220 at 427.054 kb on + strand, within HMPREF1078_RS12220 at 427.134 kb on + strand, within HMPREF1078_RS12220 at 427.135 kb on - strand, within HMPREF1078_RS12220
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/mL (C) remove 424,280 - HMPREF1078_RS12210 0.37 +0.2 424,304 - HMPREF1078_RS12210 0.39 +0.2 424,316 + HMPREF1078_RS12210 0.40 +0.4 424,316 + HMPREF1078_RS12210 0.40 -0.9 424,316 + HMPREF1078_RS12210 0.40 +0.7 424,317 - HMPREF1078_RS12210 0.40 +0.0 424,324 + HMPREF1078_RS12210 0.40 +0.0 424,358 + HMPREF1078_RS12210 0.43 -0.1 424,362 - HMPREF1078_RS12210 0.43 +0.2 424,362 - HMPREF1078_RS12210 0.43 -0.8 424,362 - HMPREF1078_RS12210 0.43 -0.5 424,362 - HMPREF1078_RS12210 0.43 -1.4 424,377 + HMPREF1078_RS12210 0.44 -0.5 424,377 + HMPREF1078_RS12210 0.44 -0.9 424,392 + HMPREF1078_RS12210 0.45 -0.1 424,392 + HMPREF1078_RS12210 0.45 -0.5 424,392 + HMPREF1078_RS12210 0.45 -0.4 424,392 + HMPREF1078_RS12210 0.45 -1.3 424,393 - HMPREF1078_RS12210 0.45 -0.7 424,400 - HMPREF1078_RS12210 0.46 +0.1 424,513 + HMPREF1078_RS12210 0.53 +0.9 424,514 - HMPREF1078_RS12210 0.54 +0.1 424,557 + HMPREF1078_RS12210 0.56 -0.4 424,558 - HMPREF1078_RS12210 0.57 -0.5 424,558 - HMPREF1078_RS12210 0.57 -0.3 424,558 - HMPREF1078_RS12210 0.57 -0.6 424,558 - HMPREF1078_RS12210 0.57 +0.4 424,559 + HMPREF1078_RS12210 0.57 +0.5 424,559 + HMPREF1078_RS12210 0.57 +0.2 424,560 - HMPREF1078_RS12210 0.57 -0.1 424,560 - HMPREF1078_RS12210 0.57 +0.1 424,560 - HMPREF1078_RS12210 0.57 +0.3 424,560 - HMPREF1078_RS12210 0.57 -0.3 424,582 - HMPREF1078_RS12210 0.58 -0.3 424,640 + HMPREF1078_RS12210 0.62 +0.6 424,663 - HMPREF1078_RS12210 0.64 -0.3 424,674 + HMPREF1078_RS12210 0.65 -1.0 424,675 - HMPREF1078_RS12210 0.65 -0.7 424,720 + HMPREF1078_RS12210 0.68 +0.5 424,775 + HMPREF1078_RS12210 0.71 +0.9 424,808 + HMPREF1078_RS12210 0.74 +0.0 424,808 + HMPREF1078_RS12210 0.74 +0.1 424,826 - HMPREF1078_RS12210 0.75 -0.9 424,831 + HMPREF1078_RS12210 0.75 +0.2 424,831 + HMPREF1078_RS12210 0.75 -0.7 424,831 + HMPREF1078_RS12210 0.75 +0.3 424,831 + HMPREF1078_RS12210 0.75 -0.6 424,831 + HMPREF1078_RS12210 0.75 +1.4 424,833 + HMPREF1078_RS12210 0.75 -1.4 424,833 + HMPREF1078_RS12210 0.75 +0.0 424,856 - HMPREF1078_RS12210 0.77 +0.2 424,856 - HMPREF1078_RS12210 0.77 -0.7 424,935 + HMPREF1078_RS12210 0.82 +0.4 424,936 - HMPREF1078_RS12210 0.83 -0.4 424,940 + HMPREF1078_RS12210 0.83 +0.2 424,953 + HMPREF1078_RS12210 0.84 -0.7 424,997 - HMPREF1078_RS12210 0.87 +0.7 425,035 + HMPREF1078_RS12210 0.89 +0.4 425,036 - HMPREF1078_RS12210 0.89 +1.0 425,066 - -1.6 425,066 - -0.5 425,066 - +0.2 425,119 + -2.4 425,119 + -0.8 425,120 - -1.4 425,147 + -0.0 425,164 + -1.4 425,164 + +0.6 425,164 + -1.8 425,165 - -1.8 425,165 - +1.6 425,198 + -0.1 425,198 + -1.0 425,199 - -0.0 425,199 - -0.1 425,199 - +0.1 425,199 - -1.0 425,199 - -1.2 425,199 - -0.7 425,216 + -0.2 425,216 + -0.3 425,276 - -0.8 425,280 + +0.1 425,303 - HMPREF1078_RS12215 0.11 -1.3 425,303 - HMPREF1078_RS12215 0.11 -1.1 425,303 - HMPREF1078_RS12215 0.11 +0.4 425,306 + HMPREF1078_RS12215 0.11 +0.4 425,314 + HMPREF1078_RS12215 0.12 -0.7 425,315 - HMPREF1078_RS12215 0.12 -0.7 425,315 - HMPREF1078_RS12215 0.12 -0.6 425,365 - HMPREF1078_RS12215 0.18 -2.6 425,405 - HMPREF1078_RS12215 0.22 +0.4 425,473 + HMPREF1078_RS12215 0.29 -0.6 425,474 - HMPREF1078_RS12215 0.29 +0.6 425,474 - HMPREF1078_RS12215 0.29 +1.2 425,480 - HMPREF1078_RS12215 0.30 -0.2 425,527 + HMPREF1078_RS12215 0.35 -0.1 425,528 - HMPREF1078_RS12215 0.35 -0.2 425,528 - HMPREF1078_RS12215 0.35 -0.7 425,528 - HMPREF1078_RS12215 0.35 +0.1 425,533 + HMPREF1078_RS12215 0.36 +1.3 425,675 - HMPREF1078_RS12215 0.51 +0.1 425,684 + HMPREF1078_RS12215 0.52 -1.0 425,684 + HMPREF1078_RS12215 0.52 -0.7 425,684 + HMPREF1078_RS12215 0.52 +0.6 425,685 - HMPREF1078_RS12215 0.52 -0.3 425,686 + HMPREF1078_RS12215 0.52 +1.1 425,686 + HMPREF1078_RS12215 0.52 -0.7 425,686 + HMPREF1078_RS12215 0.52 -1.1 425,686 + HMPREF1078_RS12215 0.52 +0.4 425,686 + HMPREF1078_RS12215 0.52 +0.6 425,687 - HMPREF1078_RS12215 0.52 +2.9 425,687 - HMPREF1078_RS12215 0.52 -1.5 425,687 - HMPREF1078_RS12215 0.52 +0.9 425,687 - HMPREF1078_RS12215 0.52 +0.3 425,687 - HMPREF1078_RS12215 0.52 -0.5 425,687 - HMPREF1078_RS12215 0.52 +0.1 425,741 + HMPREF1078_RS12215 0.58 -0.1 425,741 + HMPREF1078_RS12215 0.58 +0.0 425,898 - HMPREF1078_RS12215 0.74 +0.8 425,903 + HMPREF1078_RS12215 0.75 +0.6 425,903 + HMPREF1078_RS12215 0.75 -0.7 425,903 - HMPREF1078_RS12215 0.75 +0.0 425,927 + HMPREF1078_RS12215 0.78 -0.5 425,927 + HMPREF1078_RS12215 0.78 +0.1 425,927 + HMPREF1078_RS12215 0.78 -0.1 425,927 + HMPREF1078_RS12215 0.78 +0.5 425,928 - HMPREF1078_RS12215 0.78 +0.9 425,928 - HMPREF1078_RS12215 0.78 -0.1 425,953 + HMPREF1078_RS12215 0.80 -1.1 426,034 + HMPREF1078_RS12215 0.89 -0.1 426,034 + HMPREF1078_RS12215 0.89 -0.4 426,035 - HMPREF1078_RS12215 0.89 -1.1 426,035 - HMPREF1078_RS12215 0.89 +1.9 426,079 - +0.2 426,079 - +0.1 426,105 + -1.3 426,106 - -0.3 426,110 + -0.7 426,111 - -0.1 426,153 + +0.5 426,167 + -0.0 426,175 + +0.3 426,175 + +1.2 426,175 + -0.5 426,176 - -1.0 426,230 + -0.1 426,246 + +0.8 426,246 + +0.5 426,247 - -0.8 426,247 - -0.3 426,250 + +0.1 426,268 - +1.0 426,402 - HMPREF1078_RS12220 0.22 +0.6 426,423 - HMPREF1078_RS12220 0.23 +0.5 426,423 - HMPREF1078_RS12220 0.23 +0.1 426,423 - HMPREF1078_RS12220 0.23 +0.0 426,448 + HMPREF1078_RS12220 0.26 +0.3 426,448 + HMPREF1078_RS12220 0.26 -0.6 426,449 - HMPREF1078_RS12220 0.26 -0.5 426,449 - HMPREF1078_RS12220 0.26 -0.2 426,449 - HMPREF1078_RS12220 0.26 +0.2 426,472 + HMPREF1078_RS12220 0.28 -0.1 426,491 + HMPREF1078_RS12220 0.29 -0.5 426,491 + HMPREF1078_RS12220 0.29 -0.6 426,492 - HMPREF1078_RS12220 0.30 -1.6 426,557 + HMPREF1078_RS12220 0.35 +1.5 426,574 + HMPREF1078_RS12220 0.37 +0.8 426,694 + HMPREF1078_RS12220 0.47 +0.3 426,710 + HMPREF1078_RS12220 0.49 -0.5 426,711 - HMPREF1078_RS12220 0.49 -1.9 426,725 - HMPREF1078_RS12220 0.50 -0.7 426,725 - HMPREF1078_RS12220 0.50 +0.5 426,740 + HMPREF1078_RS12220 0.52 -1.2 426,741 - HMPREF1078_RS12220 0.52 +1.3 426,762 + HMPREF1078_RS12220 0.53 -0.4 426,762 + HMPREF1078_RS12220 0.53 +1.5 426,877 + HMPREF1078_RS12220 0.64 -2.2 426,894 - HMPREF1078_RS12220 0.65 -1.9 426,995 + HMPREF1078_RS12220 0.74 +0.3 427,020 + HMPREF1078_RS12220 0.76 +1.5 427,021 - HMPREF1078_RS12220 0.76 +0.6 427,054 + HMPREF1078_RS12220 0.79 +0.7 427,134 + HMPREF1078_RS12220 0.86 -0.4 427,135 - HMPREF1078_RS12220 0.87 -2.4
Or see this region's nucleotide sequence