Experiment: Mucin from porcine stomach type III 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09745 and HMPREF1078_RS18740 are separated by 79 nucleotides HMPREF1078_RS18740 and HMPREF1078_RS09755 are separated by 3 nucleotides HMPREF1078_RS09755 and HMPREF1078_RS09760 are separated by 6 nucleotides HMPREF1078_RS09760 and HMPREF1078_RS09765 are separated by 20 nucleotides
HMPREF1078_RS09745: HMPREF1078_RS09745 - phenylalanine--tRNA ligase subunit alpha, at 545,840 to 546,859
_RS09745
HMPREF1078_RS18740: HMPREF1078_RS18740 - fluoride efflux transporter CrcB, at 546,939 to 547,325
_RS18740
HMPREF1078_RS09755: HMPREF1078_RS09755 - endonuclease III, at 547,329 to 547,973
_RS09755
HMPREF1078_RS09760: HMPREF1078_RS09760 - hypothetical protein, at 547,980 to 548,879
_RS09760
HMPREF1078_RS09765: HMPREF1078_RS09765 - CinA family protein, at 548,900 to 549,364
_RS09765
Position (kb) 547
548 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 546.858 kb on - strand at 546.870 kb on + strand at 546.870 kb on + strand at 546.870 kb on + strand at 546.900 kb on - strand at 546.923 kb on + strand at 546.932 kb on - strand at 546.939 kb on - strand at 546.939 kb on - strand at 546.943 kb on + strand at 546.943 kb on + strand at 546.953 kb on - strand at 546.953 kb on - strand at 546.955 kb on + strand at 546.955 kb on + strand at 546.955 kb on + strand at 546.955 kb on + strand at 546.960 kb on - strand at 546.960 kb on - strand at 546.985 kb on + strand, within HMPREF1078_RS18740 at 547.027 kb on + strand, within HMPREF1078_RS18740 at 547.027 kb on + strand, within HMPREF1078_RS18740 at 547.027 kb on + strand, within HMPREF1078_RS18740 at 547.028 kb on - strand, within HMPREF1078_RS18740 at 547.097 kb on + strand, within HMPREF1078_RS18740 at 547.113 kb on - strand, within HMPREF1078_RS18740 at 547.113 kb on - strand, within HMPREF1078_RS18740 at 547.117 kb on + strand, within HMPREF1078_RS18740 at 547.118 kb on - strand, within HMPREF1078_RS18740 at 547.135 kb on + strand, within HMPREF1078_RS18740 at 547.135 kb on + strand, within HMPREF1078_RS18740 at 547.135 kb on + strand, within HMPREF1078_RS18740 at 547.135 kb on + strand, within HMPREF1078_RS18740 at 547.135 kb on + strand, within HMPREF1078_RS18740 at 547.135 kb on + strand, within HMPREF1078_RS18740 at 547.135 kb on + strand, within HMPREF1078_RS18740 at 547.136 kb on - strand, within HMPREF1078_RS18740 at 547.189 kb on + strand, within HMPREF1078_RS18740 at 547.190 kb on - strand, within HMPREF1078_RS18740 at 547.193 kb on + strand, within HMPREF1078_RS18740 at 547.194 kb on - strand, within HMPREF1078_RS18740 at 547.194 kb on - strand, within HMPREF1078_RS18740 at 547.194 kb on - strand, within HMPREF1078_RS18740 at 547.224 kb on - strand, within HMPREF1078_RS18740 at 547.224 kb on - strand, within HMPREF1078_RS18740 at 547.224 kb on - strand, within HMPREF1078_RS18740 at 547.224 kb on - strand, within HMPREF1078_RS18740 at 547.238 kb on - strand, within HMPREF1078_RS18740 at 547.261 kb on + strand, within HMPREF1078_RS18740 at 547.282 kb on + strand, within HMPREF1078_RS18740 at 547.326 kb on + strand at 547.327 kb on - strand at 547.328 kb on + strand at 547.328 kb on + strand at 547.329 kb on - strand at 547.349 kb on + strand at 547.350 kb on - strand at 547.350 kb on - strand at 547.407 kb on + strand, within HMPREF1078_RS09755 at 547.475 kb on + strand, within HMPREF1078_RS09755 at 547.475 kb on + strand, within HMPREF1078_RS09755 at 547.475 kb on + strand, within HMPREF1078_RS09755 at 547.475 kb on + strand, within HMPREF1078_RS09755 at 547.476 kb on - strand, within HMPREF1078_RS09755 at 547.476 kb on - strand, within HMPREF1078_RS09755 at 547.476 kb on - strand, within HMPREF1078_RS09755 at 547.555 kb on - strand, within HMPREF1078_RS09755 at 547.555 kb on - strand, within HMPREF1078_RS09755 at 547.569 kb on - strand, within HMPREF1078_RS09755 at 547.583 kb on + strand, within HMPREF1078_RS09755 at 547.598 kb on - strand, within HMPREF1078_RS09755 at 547.642 kb on + strand, within HMPREF1078_RS09755 at 547.642 kb on + strand, within HMPREF1078_RS09755 at 547.654 kb on + strand, within HMPREF1078_RS09755 at 547.833 kb on - strand, within HMPREF1078_RS09755 at 547.887 kb on + strand, within HMPREF1078_RS09755 at 547.888 kb on - strand, within HMPREF1078_RS09755 at 547.895 kb on + strand, within HMPREF1078_RS09755 at 547.947 kb on + strand at 547.971 kb on + strand at 547.972 kb on - strand at 547.976 kb on + strand at 547.977 kb on - strand at 547.977 kb on - strand at 547.977 kb on - strand at 547.977 kb on - strand at 548.002 kb on + strand at 548.003 kb on - strand at 548.082 kb on - strand, within HMPREF1078_RS09760 at 548.098 kb on + strand, within HMPREF1078_RS09760 at 548.098 kb on + strand, within HMPREF1078_RS09760 at 548.099 kb on - strand, within HMPREF1078_RS09760 at 548.099 kb on - strand, within HMPREF1078_RS09760 at 548.099 kb on - strand, within HMPREF1078_RS09760 at 548.099 kb on - strand, within HMPREF1078_RS09760 at 548.100 kb on + strand, within HMPREF1078_RS09760 at 548.100 kb on + strand, within HMPREF1078_RS09760 at 548.100 kb on + strand, within HMPREF1078_RS09760 at 548.102 kb on + strand, within HMPREF1078_RS09760 at 548.102 kb on + strand, within HMPREF1078_RS09760 at 548.102 kb on + strand, within HMPREF1078_RS09760 at 548.102 kb on + strand, within HMPREF1078_RS09760 at 548.103 kb on - strand, within HMPREF1078_RS09760 at 548.103 kb on - strand, within HMPREF1078_RS09760 at 548.103 kb on - strand, within HMPREF1078_RS09760 at 548.166 kb on + strand, within HMPREF1078_RS09760 at 548.167 kb on - strand, within HMPREF1078_RS09760 at 548.167 kb on - strand, within HMPREF1078_RS09760 at 548.168 kb on + strand, within HMPREF1078_RS09760 at 548.169 kb on - strand, within HMPREF1078_RS09760 at 548.223 kb on + strand, within HMPREF1078_RS09760 at 548.224 kb on - strand, within HMPREF1078_RS09760 at 548.224 kb on - strand, within HMPREF1078_RS09760 at 548.224 kb on - strand, within HMPREF1078_RS09760 at 548.253 kb on - strand, within HMPREF1078_RS09760 at 548.264 kb on - strand, within HMPREF1078_RS09760 at 548.406 kb on - strand, within HMPREF1078_RS09760 at 548.410 kb on - strand, within HMPREF1078_RS09760 at 548.445 kb on + strand, within HMPREF1078_RS09760 at 548.446 kb on - strand, within HMPREF1078_RS09760 at 548.462 kb on - strand, within HMPREF1078_RS09760 at 548.476 kb on - strand, within HMPREF1078_RS09760 at 548.529 kb on + strand, within HMPREF1078_RS09760 at 548.529 kb on + strand, within HMPREF1078_RS09760 at 548.597 kb on - strand, within HMPREF1078_RS09760 at 548.619 kb on + strand, within HMPREF1078_RS09760 at 548.651 kb on + strand, within HMPREF1078_RS09760 at 548.707 kb on - strand, within HMPREF1078_RS09760 at 548.707 kb on - strand, within HMPREF1078_RS09760 at 548.747 kb on - strand, within HMPREF1078_RS09760 at 548.747 kb on - strand, within HMPREF1078_RS09760 at 548.749 kb on - strand, within HMPREF1078_RS09760 at 548.749 kb on - strand, within HMPREF1078_RS09760 at 548.749 kb on - strand, within HMPREF1078_RS09760 at 548.750 kb on + strand, within HMPREF1078_RS09760 at 548.750 kb on + strand, within HMPREF1078_RS09760 at 548.750 kb on + strand, within HMPREF1078_RS09760 at 548.750 kb on + strand, within HMPREF1078_RS09760 at 548.750 kb on + strand, within HMPREF1078_RS09760 at 548.751 kb on - strand, within HMPREF1078_RS09760 at 548.751 kb on - strand, within HMPREF1078_RS09760 at 548.751 kb on - strand, within HMPREF1078_RS09760 at 548.751 kb on - strand, within HMPREF1078_RS09760 at 548.776 kb on + strand, within HMPREF1078_RS09760 at 548.848 kb on - strand at 548.848 kb on - strand at 548.867 kb on + strand at 548.867 kb on + strand at 548.868 kb on - strand at 548.878 kb on - strand at 548.878 kb on - strand at 548.897 kb on - strand at 548.897 kb on - strand at 548.897 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/mL (C) remove 546,858 - -1.4 546,870 + -0.2 546,870 + -0.8 546,870 + +0.6 546,900 - -0.8 546,923 + -0.5 546,932 - +0.1 546,939 - -1.6 546,939 - +0.6 546,943 + -1.0 546,943 + +0.1 546,953 - -0.1 546,953 - -0.7 546,955 + +0.3 546,955 + -0.2 546,955 + +0.6 546,955 + -0.7 546,960 - -0.3 546,960 - -0.1 546,985 + HMPREF1078_RS18740 0.12 -0.1 547,027 + HMPREF1078_RS18740 0.23 -0.2 547,027 + HMPREF1078_RS18740 0.23 -1.5 547,027 + HMPREF1078_RS18740 0.23 -1.3 547,028 - HMPREF1078_RS18740 0.23 -0.5 547,097 + HMPREF1078_RS18740 0.41 -1.6 547,113 - HMPREF1078_RS18740 0.45 -0.2 547,113 - HMPREF1078_RS18740 0.45 -1.0 547,117 + HMPREF1078_RS18740 0.46 -0.1 547,118 - HMPREF1078_RS18740 0.46 -0.3 547,135 + HMPREF1078_RS18740 0.51 -2.4 547,135 + HMPREF1078_RS18740 0.51 -0.4 547,135 + HMPREF1078_RS18740 0.51 -1.5 547,135 + HMPREF1078_RS18740 0.51 -0.5 547,135 + HMPREF1078_RS18740 0.51 -0.5 547,135 + HMPREF1078_RS18740 0.51 -0.3 547,135 + HMPREF1078_RS18740 0.51 +1.0 547,136 - HMPREF1078_RS18740 0.51 -0.1 547,189 + HMPREF1078_RS18740 0.65 -1.9 547,190 - HMPREF1078_RS18740 0.65 -2.7 547,193 + HMPREF1078_RS18740 0.66 -1.7 547,194 - HMPREF1078_RS18740 0.66 +0.2 547,194 - HMPREF1078_RS18740 0.66 -2.1 547,194 - HMPREF1078_RS18740 0.66 -0.1 547,224 - HMPREF1078_RS18740 0.74 -0.5 547,224 - HMPREF1078_RS18740 0.74 -0.2 547,224 - HMPREF1078_RS18740 0.74 +0.8 547,224 - HMPREF1078_RS18740 0.74 +0.3 547,238 - HMPREF1078_RS18740 0.77 -0.9 547,261 + HMPREF1078_RS18740 0.83 -0.8 547,282 + HMPREF1078_RS18740 0.89 +0.9 547,326 + -0.7 547,327 - +0.5 547,328 + -0.8 547,328 + +0.8 547,329 - -0.1 547,349 + +0.6 547,350 - -1.2 547,350 - +2.9 547,407 + HMPREF1078_RS09755 0.12 -1.0 547,475 + HMPREF1078_RS09755 0.23 -0.9 547,475 + HMPREF1078_RS09755 0.23 -2.2 547,475 + HMPREF1078_RS09755 0.23 -0.8 547,475 + HMPREF1078_RS09755 0.23 -1.4 547,476 - HMPREF1078_RS09755 0.23 +0.1 547,476 - HMPREF1078_RS09755 0.23 +0.9 547,476 - HMPREF1078_RS09755 0.23 +0.5 547,555 - HMPREF1078_RS09755 0.35 -0.2 547,555 - HMPREF1078_RS09755 0.35 -1.7 547,569 - HMPREF1078_RS09755 0.37 -0.7 547,583 + HMPREF1078_RS09755 0.39 -0.5 547,598 - HMPREF1078_RS09755 0.42 -0.9 547,642 + HMPREF1078_RS09755 0.49 -1.2 547,642 + HMPREF1078_RS09755 0.49 -2.2 547,654 + HMPREF1078_RS09755 0.50 -0.3 547,833 - HMPREF1078_RS09755 0.78 -2.4 547,887 + HMPREF1078_RS09755 0.87 -0.4 547,888 - HMPREF1078_RS09755 0.87 +1.4 547,895 + HMPREF1078_RS09755 0.88 -0.0 547,947 + -0.8 547,971 + -0.1 547,972 - -0.4 547,976 + -1.2 547,977 - -0.1 547,977 - -0.8 547,977 - +0.8 547,977 - +0.2 548,002 + +1.0 548,003 - -0.2 548,082 - HMPREF1078_RS09760 0.11 -0.5 548,098 + HMPREF1078_RS09760 0.13 -0.6 548,098 + HMPREF1078_RS09760 0.13 -0.1 548,099 - HMPREF1078_RS09760 0.13 +0.7 548,099 - HMPREF1078_RS09760 0.13 +0.3 548,099 - HMPREF1078_RS09760 0.13 +0.4 548,099 - HMPREF1078_RS09760 0.13 -0.6 548,100 + HMPREF1078_RS09760 0.13 -0.7 548,100 + HMPREF1078_RS09760 0.13 +0.2 548,100 + HMPREF1078_RS09760 0.13 -0.6 548,102 + HMPREF1078_RS09760 0.14 -0.8 548,102 + HMPREF1078_RS09760 0.14 -2.0 548,102 + HMPREF1078_RS09760 0.14 +0.1 548,102 + HMPREF1078_RS09760 0.14 -1.5 548,103 - HMPREF1078_RS09760 0.14 +0.1 548,103 - HMPREF1078_RS09760 0.14 -0.0 548,103 - HMPREF1078_RS09760 0.14 +0.2 548,166 + HMPREF1078_RS09760 0.21 -2.5 548,167 - HMPREF1078_RS09760 0.21 -1.2 548,167 - HMPREF1078_RS09760 0.21 +0.7 548,168 + HMPREF1078_RS09760 0.21 +0.0 548,169 - HMPREF1078_RS09760 0.21 -0.1 548,223 + HMPREF1078_RS09760 0.27 -0.3 548,224 - HMPREF1078_RS09760 0.27 +0.1 548,224 - HMPREF1078_RS09760 0.27 -0.2 548,224 - HMPREF1078_RS09760 0.27 -0.3 548,253 - HMPREF1078_RS09760 0.30 +0.5 548,264 - HMPREF1078_RS09760 0.32 -1.3 548,406 - HMPREF1078_RS09760 0.47 +1.1 548,410 - HMPREF1078_RS09760 0.48 -0.1 548,445 + HMPREF1078_RS09760 0.52 +0.4 548,446 - HMPREF1078_RS09760 0.52 -0.0 548,462 - HMPREF1078_RS09760 0.54 -0.2 548,476 - HMPREF1078_RS09760 0.55 -0.2 548,529 + HMPREF1078_RS09760 0.61 -0.3 548,529 + HMPREF1078_RS09760 0.61 +1.1 548,597 - HMPREF1078_RS09760 0.69 +0.4 548,619 + HMPREF1078_RS09760 0.71 +0.9 548,651 + HMPREF1078_RS09760 0.75 -0.1 548,707 - HMPREF1078_RS09760 0.81 +0.8 548,707 - HMPREF1078_RS09760 0.81 -1.2 548,747 - HMPREF1078_RS09760 0.85 -0.7 548,747 - HMPREF1078_RS09760 0.85 +0.4 548,749 - HMPREF1078_RS09760 0.85 -1.2 548,749 - HMPREF1078_RS09760 0.85 -0.4 548,749 - HMPREF1078_RS09760 0.85 -0.5 548,750 + HMPREF1078_RS09760 0.86 +1.0 548,750 + HMPREF1078_RS09760 0.86 +1.1 548,750 + HMPREF1078_RS09760 0.86 -0.6 548,750 + HMPREF1078_RS09760 0.86 -0.7 548,750 + HMPREF1078_RS09760 0.86 -1.4 548,751 - HMPREF1078_RS09760 0.86 +1.9 548,751 - HMPREF1078_RS09760 0.86 -0.0 548,751 - HMPREF1078_RS09760 0.86 -0.6 548,751 - HMPREF1078_RS09760 0.86 +0.6 548,776 + HMPREF1078_RS09760 0.88 -0.1 548,848 - -0.7 548,848 - -1.1 548,867 + +2.0 548,867 + -0.0 548,868 - -2.0 548,878 - -0.2 548,878 - -0.2 548,897 - -0.9 548,897 - -0.4 548,897 - -0.2
Or see this region's nucleotide sequence