Experiment: Mucin from porcine stomach type III 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07960 and HMPREF1078_RS07965 are separated by 8 nucleotides HMPREF1078_RS07965 and HMPREF1078_RS07970 are separated by 97 nucleotides HMPREF1078_RS07970 and HMPREF1078_RS07975 are separated by 62 nucleotides
HMPREF1078_RS07960: HMPREF1078_RS07960 - helix-turn-helix domain-containing protein, at 154,901 to 155,173
_RS07960
HMPREF1078_RS07965: HMPREF1078_RS07965 - helix-turn-helix domain-containing protein, at 155,182 to 155,469
_RS07965
HMPREF1078_RS07970: HMPREF1078_RS07970 - VOC family protein, at 155,567 to 155,986
_RS07970
HMPREF1078_RS07975: HMPREF1078_RS07975 - GNAT family N-acetyltransferase, at 156,049 to 156,621
_RS07975
Position (kb) 155
156 Strain fitness (log2 ratio) -2
-1
0
1
2 at 154.268 kb on + strand at 154.270 kb on - strand at 154.270 kb on - strand at 154.270 kb on - strand at 154.270 kb on - strand at 154.270 kb on - strand at 154.270 kb on - strand at 154.272 kb on - strand at 154.274 kb on - strand at 154.274 kb on - strand at 154.274 kb on - strand at 154.299 kb on + strand at 154.303 kb on + strand at 154.304 kb on - strand at 154.402 kb on - strand at 154.566 kb on - strand at 154.609 kb on + strand at 154.672 kb on + strand at 154.673 kb on - strand at 154.724 kb on + strand at 154.740 kb on - strand at 154.740 kb on - strand at 154.783 kb on + strand at 154.783 kb on + strand at 154.853 kb on + strand at 154.854 kb on - strand at 154.854 kb on - strand at 154.854 kb on - strand at 154.900 kb on + strand at 155.016 kb on + strand, within HMPREF1078_RS07960 at 155.040 kb on + strand, within HMPREF1078_RS07960 at 155.080 kb on + strand, within HMPREF1078_RS07960 at 155.081 kb on - strand, within HMPREF1078_RS07960 at 155.121 kb on - strand, within HMPREF1078_RS07960 at 155.250 kb on - strand, within HMPREF1078_RS07965 at 155.270 kb on + strand, within HMPREF1078_RS07965 at 155.271 kb on - strand, within HMPREF1078_RS07965 at 155.306 kb on + strand, within HMPREF1078_RS07965 at 155.306 kb on + strand, within HMPREF1078_RS07965 at 155.306 kb on + strand, within HMPREF1078_RS07965 at 155.306 kb on + strand, within HMPREF1078_RS07965 at 155.308 kb on + strand, within HMPREF1078_RS07965 at 155.309 kb on - strand, within HMPREF1078_RS07965 at 155.385 kb on + strand, within HMPREF1078_RS07965 at 155.393 kb on - strand, within HMPREF1078_RS07965 at 155.419 kb on + strand, within HMPREF1078_RS07965 at 155.524 kb on + strand at 155.525 kb on - strand at 155.525 kb on - strand at 155.529 kb on - strand at 155.566 kb on + strand at 155.567 kb on - strand at 155.670 kb on - strand, within HMPREF1078_RS07970 at 155.676 kb on - strand, within HMPREF1078_RS07970 at 155.707 kb on - strand, within HMPREF1078_RS07970 at 155.714 kb on + strand, within HMPREF1078_RS07970 at 155.748 kb on + strand, within HMPREF1078_RS07970 at 155.789 kb on + strand, within HMPREF1078_RS07970 at 155.789 kb on + strand, within HMPREF1078_RS07970 at 155.790 kb on - strand, within HMPREF1078_RS07970 at 155.792 kb on - strand, within HMPREF1078_RS07970 at 155.792 kb on - strand, within HMPREF1078_RS07970 at 155.934 kb on + strand, within HMPREF1078_RS07970 at 155.939 kb on + strand, within HMPREF1078_RS07970 at 155.939 kb on + strand, within HMPREF1078_RS07970 at 155.940 kb on - strand, within HMPREF1078_RS07970 at 155.981 kb on - strand at 155.984 kb on + strand at 156.020 kb on - strand at 156.041 kb on + strand at 156.112 kb on + strand, within HMPREF1078_RS07975 at 156.206 kb on + strand, within HMPREF1078_RS07975 at 156.223 kb on + strand, within HMPREF1078_RS07975 at 156.223 kb on + strand, within HMPREF1078_RS07975 at 156.223 kb on + strand, within HMPREF1078_RS07975 at 156.223 kb on + strand, within HMPREF1078_RS07975 at 156.223 kb on + strand, within HMPREF1078_RS07975 at 156.223 kb on + strand, within HMPREF1078_RS07975 at 156.224 kb on - strand, within HMPREF1078_RS07975 at 156.334 kb on + strand, within HMPREF1078_RS07975 at 156.400 kb on + strand, within HMPREF1078_RS07975
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/mL (C) remove 154,268 + +1.7 154,270 - -1.7 154,270 - +0.1 154,270 - +0.5 154,270 - -1.5 154,270 - -0.7 154,270 - +0.7 154,272 - +0.3 154,274 - +1.0 154,274 - -0.9 154,274 - -0.1 154,299 + -0.4 154,303 + -0.9 154,304 - +2.3 154,402 - +0.8 154,566 - +0.7 154,609 + -0.0 154,672 + -0.3 154,673 - +0.0 154,724 + +0.1 154,740 - -0.4 154,740 - -0.9 154,783 + -1.1 154,783 + -0.4 154,853 + +0.1 154,854 - +0.5 154,854 - -0.6 154,854 - +0.2 154,900 + +1.3 155,016 + HMPREF1078_RS07960 0.42 -1.1 155,040 + HMPREF1078_RS07960 0.51 +0.7 155,080 + HMPREF1078_RS07960 0.66 -1.7 155,081 - HMPREF1078_RS07960 0.66 -0.2 155,121 - HMPREF1078_RS07960 0.81 -1.4 155,250 - HMPREF1078_RS07965 0.24 +0.1 155,270 + HMPREF1078_RS07965 0.31 -1.7 155,271 - HMPREF1078_RS07965 0.31 -1.3 155,306 + HMPREF1078_RS07965 0.43 -1.8 155,306 + HMPREF1078_RS07965 0.43 -0.1 155,306 + HMPREF1078_RS07965 0.43 -0.6 155,306 + HMPREF1078_RS07965 0.43 -0.0 155,308 + HMPREF1078_RS07965 0.44 +0.3 155,309 - HMPREF1078_RS07965 0.44 -0.6 155,385 + HMPREF1078_RS07965 0.70 -0.1 155,393 - HMPREF1078_RS07965 0.73 +0.4 155,419 + HMPREF1078_RS07965 0.82 -2.0 155,524 + -0.2 155,525 - +0.6 155,525 - -0.3 155,529 - +0.3 155,566 + -0.2 155,567 - -0.2 155,670 - HMPREF1078_RS07970 0.25 -1.6 155,676 - HMPREF1078_RS07970 0.26 -1.0 155,707 - HMPREF1078_RS07970 0.33 -0.1 155,714 + HMPREF1078_RS07970 0.35 -0.7 155,748 + HMPREF1078_RS07970 0.43 -0.9 155,789 + HMPREF1078_RS07970 0.53 +0.5 155,789 + HMPREF1078_RS07970 0.53 -0.9 155,790 - HMPREF1078_RS07970 0.53 -1.3 155,792 - HMPREF1078_RS07970 0.54 -0.6 155,792 - HMPREF1078_RS07970 0.54 +1.2 155,934 + HMPREF1078_RS07970 0.87 -0.6 155,939 + HMPREF1078_RS07970 0.89 +0.2 155,939 + HMPREF1078_RS07970 0.89 +1.1 155,940 - HMPREF1078_RS07970 0.89 -0.0 155,981 - -0.2 155,984 + -2.1 156,020 - +1.3 156,041 + +0.2 156,112 + HMPREF1078_RS07975 0.11 -0.4 156,206 + HMPREF1078_RS07975 0.27 -1.9 156,223 + HMPREF1078_RS07975 0.30 -0.2 156,223 + HMPREF1078_RS07975 0.30 +2.4 156,223 + HMPREF1078_RS07975 0.30 -0.2 156,223 + HMPREF1078_RS07975 0.30 +1.0 156,223 + HMPREF1078_RS07975 0.30 +1.0 156,223 + HMPREF1078_RS07975 0.30 +0.0 156,224 - HMPREF1078_RS07975 0.31 -2.3 156,334 + HMPREF1078_RS07975 0.50 +0.5 156,400 + HMPREF1078_RS07975 0.61 -2.5
Or see this region's nucleotide sequence