Experiment: Mucin from porcine stomach type III 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05960 and HMPREF1078_RS05965 are separated by 28 nucleotides HMPREF1078_RS05965 and HMPREF1078_RS05970 are separated by 16 nucleotides HMPREF1078_RS05970 and HMPREF1078_RS05975 overlap by 1 nucleotides
HMPREF1078_RS05960: HMPREF1078_RS05960 - ABC transporter permease, at 527,822 to 530,245
_RS05960
HMPREF1078_RS05965: HMPREF1078_RS05965 - ABC transporter ATP-binding protein, at 530,274 to 530,936
_RS05965
HMPREF1078_RS05970: HMPREF1078_RS05970 - ABC transporter permease, at 530,953 to 533,358
_RS05970
HMPREF1078_RS05975: HMPREF1078_RS05975 - HlyD family efflux transporter periplasmic adaptor subunit, at 533,358 to 534,605
_RS05975
Position (kb) 530
531
532
533
534 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 529.959 kb on + strand, within HMPREF1078_RS05960 at 529.959 kb on + strand, within HMPREF1078_RS05960 at 529.959 kb on + strand, within HMPREF1078_RS05960 at 529.959 kb on + strand, within HMPREF1078_RS05960 at 529.997 kb on - strand, within HMPREF1078_RS05960 at 530.096 kb on - strand at 530.125 kb on - strand at 530.201 kb on - strand at 530.389 kb on - strand, within HMPREF1078_RS05965 at 530.393 kb on - strand, within HMPREF1078_RS05965 at 530.512 kb on - strand, within HMPREF1078_RS05965 at 530.546 kb on + strand, within HMPREF1078_RS05965 at 530.608 kb on + strand, within HMPREF1078_RS05965 at 530.673 kb on + strand, within HMPREF1078_RS05965 at 530.730 kb on + strand, within HMPREF1078_RS05965 at 530.730 kb on + strand, within HMPREF1078_RS05965 at 530.790 kb on - strand, within HMPREF1078_RS05965 at 530.796 kb on + strand, within HMPREF1078_RS05965 at 530.936 kb on + strand at 530.940 kb on - strand at 530.942 kb on - strand at 531.030 kb on + strand at 531.059 kb on + strand at 531.092 kb on + strand at 531.093 kb on - strand at 531.142 kb on + strand at 531.143 kb on - strand at 531.143 kb on - strand at 531.159 kb on + strand at 531.360 kb on + strand, within HMPREF1078_RS05970 at 531.361 kb on - strand, within HMPREF1078_RS05970 at 531.387 kb on - strand, within HMPREF1078_RS05970 at 531.410 kb on + strand, within HMPREF1078_RS05970 at 531.740 kb on + strand, within HMPREF1078_RS05970 at 531.787 kb on + strand, within HMPREF1078_RS05970 at 531.831 kb on + strand, within HMPREF1078_RS05970 at 531.890 kb on + strand, within HMPREF1078_RS05970 at 531.890 kb on + strand, within HMPREF1078_RS05970 at 531.890 kb on + strand, within HMPREF1078_RS05970 at 531.890 kb on + strand, within HMPREF1078_RS05970 at 531.891 kb on - strand, within HMPREF1078_RS05970 at 531.895 kb on + strand, within HMPREF1078_RS05970 at 531.939 kb on + strand, within HMPREF1078_RS05970 at 531.939 kb on + strand, within HMPREF1078_RS05970 at 531.939 kb on + strand, within HMPREF1078_RS05970 at 531.940 kb on - strand, within HMPREF1078_RS05970 at 531.940 kb on - strand, within HMPREF1078_RS05970 at 531.940 kb on - strand, within HMPREF1078_RS05970 at 532.012 kb on - strand, within HMPREF1078_RS05970 at 532.300 kb on + strand, within HMPREF1078_RS05970 at 532.300 kb on + strand, within HMPREF1078_RS05970 at 532.492 kb on + strand, within HMPREF1078_RS05970 at 532.513 kb on + strand, within HMPREF1078_RS05970 at 532.514 kb on - strand, within HMPREF1078_RS05970 at 532.522 kb on - strand, within HMPREF1078_RS05970 at 532.522 kb on - strand, within HMPREF1078_RS05970 at 532.522 kb on - strand, within HMPREF1078_RS05970 at 532.554 kb on + strand, within HMPREF1078_RS05970 at 532.700 kb on + strand, within HMPREF1078_RS05970 at 532.701 kb on - strand, within HMPREF1078_RS05970 at 532.701 kb on - strand, within HMPREF1078_RS05970 at 532.705 kb on - strand, within HMPREF1078_RS05970 at 532.705 kb on - strand, within HMPREF1078_RS05970 at 532.705 kb on - strand, within HMPREF1078_RS05970 at 532.775 kb on + strand, within HMPREF1078_RS05970 at 532.776 kb on - strand, within HMPREF1078_RS05970 at 532.909 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.081 kb on - strand, within HMPREF1078_RS05970 at 533.084 kb on + strand, within HMPREF1078_RS05970 at 533.084 kb on + strand, within HMPREF1078_RS05970 at 533.085 kb on - strand, within HMPREF1078_RS05970 at 533.085 kb on - strand, within HMPREF1078_RS05970 at 533.085 kb on - strand, within HMPREF1078_RS05970 at 533.085 kb on - strand, within HMPREF1078_RS05970 at 533.086 kb on - strand, within HMPREF1078_RS05970 at 533.152 kb on - strand at 533.242 kb on + strand at 533.242 kb on + strand at 533.243 kb on - strand at 533.254 kb on - strand at 533.522 kb on - strand, within HMPREF1078_RS05975 at 533.522 kb on - strand, within HMPREF1078_RS05975 at 533.522 kb on - strand, within HMPREF1078_RS05975 at 533.556 kb on - strand, within HMPREF1078_RS05975 at 533.612 kb on - strand, within HMPREF1078_RS05975 at 533.720 kb on - strand, within HMPREF1078_RS05975 at 533.720 kb on - strand, within HMPREF1078_RS05975 at 533.776 kb on + strand, within HMPREF1078_RS05975 at 534.107 kb on + strand, within HMPREF1078_RS05975 at 534.110 kb on - strand, within HMPREF1078_RS05975 at 534.110 kb on - strand, within HMPREF1078_RS05975
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/mL (C) remove 529,959 + HMPREF1078_RS05960 0.88 -3.7 529,959 + HMPREF1078_RS05960 0.88 +1.6 529,959 + HMPREF1078_RS05960 0.88 -1.2 529,959 + HMPREF1078_RS05960 0.88 -1.3 529,997 - HMPREF1078_RS05960 0.90 +1.2 530,096 - -1.0 530,125 - +0.9 530,201 - +0.9 530,389 - HMPREF1078_RS05965 0.17 -0.6 530,393 - HMPREF1078_RS05965 0.18 +1.7 530,512 - HMPREF1078_RS05965 0.36 +0.6 530,546 + HMPREF1078_RS05965 0.41 +0.7 530,608 + HMPREF1078_RS05965 0.50 -0.6 530,673 + HMPREF1078_RS05965 0.60 -0.6 530,730 + HMPREF1078_RS05965 0.69 -0.2 530,730 + HMPREF1078_RS05965 0.69 -0.7 530,790 - HMPREF1078_RS05965 0.78 +0.4 530,796 + HMPREF1078_RS05965 0.79 -1.8 530,936 + +0.1 530,940 - +0.8 530,942 - +0.7 531,030 + -0.0 531,059 + -1.2 531,092 + +0.5 531,093 - -2.9 531,142 + -0.3 531,143 - +0.7 531,143 - +0.4 531,159 + +0.3 531,360 + HMPREF1078_RS05970 0.17 +0.1 531,361 - HMPREF1078_RS05970 0.17 -0.2 531,387 - HMPREF1078_RS05970 0.18 -1.0 531,410 + HMPREF1078_RS05970 0.19 -1.2 531,740 + HMPREF1078_RS05970 0.33 +0.8 531,787 + HMPREF1078_RS05970 0.35 +0.6 531,831 + HMPREF1078_RS05970 0.36 +0.2 531,890 + HMPREF1078_RS05970 0.39 -1.1 531,890 + HMPREF1078_RS05970 0.39 +0.2 531,890 + HMPREF1078_RS05970 0.39 -0.1 531,890 + HMPREF1078_RS05970 0.39 -1.4 531,891 - HMPREF1078_RS05970 0.39 -0.8 531,895 + HMPREF1078_RS05970 0.39 +0.2 531,939 + HMPREF1078_RS05970 0.41 -0.2 531,939 + HMPREF1078_RS05970 0.41 -0.4 531,939 + HMPREF1078_RS05970 0.41 -0.2 531,940 - HMPREF1078_RS05970 0.41 -1.0 531,940 - HMPREF1078_RS05970 0.41 +1.1 531,940 - HMPREF1078_RS05970 0.41 +0.6 532,012 - HMPREF1078_RS05970 0.44 -0.1 532,300 + HMPREF1078_RS05970 0.56 -1.3 532,300 + HMPREF1078_RS05970 0.56 +0.1 532,492 + HMPREF1078_RS05970 0.64 +0.7 532,513 + HMPREF1078_RS05970 0.65 +0.6 532,514 - HMPREF1078_RS05970 0.65 +0.3 532,522 - HMPREF1078_RS05970 0.65 +0.1 532,522 - HMPREF1078_RS05970 0.65 -0.6 532,522 - HMPREF1078_RS05970 0.65 -1.0 532,554 + HMPREF1078_RS05970 0.67 +1.1 532,700 + HMPREF1078_RS05970 0.73 -0.4 532,701 - HMPREF1078_RS05970 0.73 +0.3 532,701 - HMPREF1078_RS05970 0.73 -1.3 532,705 - HMPREF1078_RS05970 0.73 +0.8 532,705 - HMPREF1078_RS05970 0.73 +0.6 532,705 - HMPREF1078_RS05970 0.73 -0.4 532,775 + HMPREF1078_RS05970 0.76 -0.2 532,776 - HMPREF1078_RS05970 0.76 -2.1 532,909 + HMPREF1078_RS05970 0.81 -0.8 533,080 + HMPREF1078_RS05970 0.88 -0.5 533,080 + HMPREF1078_RS05970 0.88 -0.1 533,080 + HMPREF1078_RS05970 0.88 -0.1 533,080 + HMPREF1078_RS05970 0.88 -0.9 533,080 + HMPREF1078_RS05970 0.88 -0.2 533,080 + HMPREF1078_RS05970 0.88 +0.9 533,081 - HMPREF1078_RS05970 0.88 -1.2 533,084 + HMPREF1078_RS05970 0.89 -0.3 533,084 + HMPREF1078_RS05970 0.89 +0.2 533,085 - HMPREF1078_RS05970 0.89 -0.6 533,085 - HMPREF1078_RS05970 0.89 -1.3 533,085 - HMPREF1078_RS05970 0.89 -2.6 533,085 - HMPREF1078_RS05970 0.89 -1.8 533,086 - HMPREF1078_RS05970 0.89 -0.3 533,152 - -0.4 533,242 + +0.1 533,242 + -0.3 533,243 - -1.1 533,254 - -0.8 533,522 - HMPREF1078_RS05975 0.13 -0.7 533,522 - HMPREF1078_RS05975 0.13 +0.9 533,522 - HMPREF1078_RS05975 0.13 -1.4 533,556 - HMPREF1078_RS05975 0.16 +0.3 533,612 - HMPREF1078_RS05975 0.20 +0.4 533,720 - HMPREF1078_RS05975 0.29 +0.4 533,720 - HMPREF1078_RS05975 0.29 -0.2 533,776 + HMPREF1078_RS05975 0.33 -0.3 534,107 + HMPREF1078_RS05975 0.60 +0.5 534,110 - HMPREF1078_RS05975 0.60 -1.2 534,110 - HMPREF1078_RS05975 0.60 +0.5
Or see this region's nucleotide sequence