Experiment: Mucin from porcine stomach type III 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05940 and HMPREF1078_RS05945 are separated by 101 nucleotides HMPREF1078_RS05945 and HMPREF1078_RS05950 are separated by 103 nucleotides
HMPREF1078_RS05940: HMPREF1078_RS05940 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 521,846 to 523,687
_RS05940
HMPREF1078_RS05945: HMPREF1078_RS05945 - right-handed parallel beta-helix repeat-containing protein, at 523,789 to 525,597
_RS05945
HMPREF1078_RS05950: HMPREF1078_RS05950 - cysteine--tRNA ligase, at 525,701 to 527,179
_RS05950
Position (kb) 523
524
525
526 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 523.690 kb on - strand at 523.714 kb on + strand at 523.735 kb on + strand at 523.743 kb on + strand at 523.743 kb on + strand at 523.748 kb on + strand at 523.749 kb on - strand at 523.783 kb on - strand at 523.927 kb on - strand at 524.034 kb on - strand, within HMPREF1078_RS05945 at 524.070 kb on - strand, within HMPREF1078_RS05945 at 524.070 kb on - strand, within HMPREF1078_RS05945 at 524.070 kb on - strand, within HMPREF1078_RS05945 at 524.072 kb on - strand, within HMPREF1078_RS05945 at 524.073 kb on + strand, within HMPREF1078_RS05945 at 524.074 kb on - strand, within HMPREF1078_RS05945 at 524.143 kb on + strand, within HMPREF1078_RS05945 at 524.143 kb on + strand, within HMPREF1078_RS05945 at 524.144 kb on - strand, within HMPREF1078_RS05945 at 524.194 kb on + strand, within HMPREF1078_RS05945 at 524.283 kb on + strand, within HMPREF1078_RS05945 at 524.286 kb on + strand, within HMPREF1078_RS05945 at 524.346 kb on - strand, within HMPREF1078_RS05945 at 524.349 kb on + strand, within HMPREF1078_RS05945 at 524.408 kb on - strand, within HMPREF1078_RS05945 at 524.468 kb on - strand, within HMPREF1078_RS05945 at 524.550 kb on + strand, within HMPREF1078_RS05945 at 524.550 kb on + strand, within HMPREF1078_RS05945 at 524.550 kb on + strand, within HMPREF1078_RS05945 at 524.551 kb on - strand, within HMPREF1078_RS05945 at 524.551 kb on - strand, within HMPREF1078_RS05945 at 524.552 kb on + strand, within HMPREF1078_RS05945 at 524.552 kb on + strand, within HMPREF1078_RS05945 at 524.601 kb on - strand, within HMPREF1078_RS05945 at 524.635 kb on - strand, within HMPREF1078_RS05945 at 524.642 kb on + strand, within HMPREF1078_RS05945 at 524.767 kb on - strand, within HMPREF1078_RS05945 at 524.819 kb on - strand, within HMPREF1078_RS05945 at 524.820 kb on + strand, within HMPREF1078_RS05945 at 524.821 kb on - strand, within HMPREF1078_RS05945 at 524.850 kb on - strand, within HMPREF1078_RS05945 at 524.857 kb on + strand, within HMPREF1078_RS05945 at 524.858 kb on - strand, within HMPREF1078_RS05945 at 524.982 kb on + strand, within HMPREF1078_RS05945 at 524.983 kb on - strand, within HMPREF1078_RS05945 at 525.000 kb on - strand, within HMPREF1078_RS05945 at 525.000 kb on - strand, within HMPREF1078_RS05945 at 525.016 kb on - strand, within HMPREF1078_RS05945 at 525.016 kb on - strand, within HMPREF1078_RS05945 at 525.098 kb on + strand, within HMPREF1078_RS05945 at 525.099 kb on - strand, within HMPREF1078_RS05945 at 525.122 kb on + strand, within HMPREF1078_RS05945 at 525.174 kb on + strand, within HMPREF1078_RS05945 at 525.174 kb on + strand, within HMPREF1078_RS05945 at 525.175 kb on - strand, within HMPREF1078_RS05945 at 525.199 kb on - strand, within HMPREF1078_RS05945 at 525.213 kb on + strand, within HMPREF1078_RS05945 at 525.399 kb on - strand, within HMPREF1078_RS05945 at 525.399 kb on - strand, within HMPREF1078_RS05945 at 525.399 kb on - strand, within HMPREF1078_RS05945 at 525.530 kb on + strand at 525.531 kb on - strand at 525.543 kb on + strand at 525.565 kb on - strand at 525.569 kb on - strand at 525.602 kb on + strand at 525.603 kb on - strand at 525.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/mL (C) remove 523,690 - +0.9 523,714 + +2.1 523,735 + +0.2 523,743 + -0.2 523,743 + -1.5 523,748 + +0.5 523,749 - -0.7 523,783 - +0.8 523,927 - +0.3 524,034 - HMPREF1078_RS05945 0.14 -2.4 524,070 - HMPREF1078_RS05945 0.16 +1.2 524,070 - HMPREF1078_RS05945 0.16 -0.6 524,070 - HMPREF1078_RS05945 0.16 +0.5 524,072 - HMPREF1078_RS05945 0.16 +0.1 524,073 + HMPREF1078_RS05945 0.16 -0.7 524,074 - HMPREF1078_RS05945 0.16 -0.2 524,143 + HMPREF1078_RS05945 0.20 +2.3 524,143 + HMPREF1078_RS05945 0.20 +1.8 524,144 - HMPREF1078_RS05945 0.20 +0.4 524,194 + HMPREF1078_RS05945 0.22 -0.4 524,283 + HMPREF1078_RS05945 0.27 -1.2 524,286 + HMPREF1078_RS05945 0.27 -1.0 524,346 - HMPREF1078_RS05945 0.31 -1.2 524,349 + HMPREF1078_RS05945 0.31 +0.0 524,408 - HMPREF1078_RS05945 0.34 +0.6 524,468 - HMPREF1078_RS05945 0.38 +0.7 524,550 + HMPREF1078_RS05945 0.42 -2.1 524,550 + HMPREF1078_RS05945 0.42 +0.6 524,550 + HMPREF1078_RS05945 0.42 -1.2 524,551 - HMPREF1078_RS05945 0.42 -3.2 524,551 - HMPREF1078_RS05945 0.42 -2.9 524,552 + HMPREF1078_RS05945 0.42 -0.2 524,552 + HMPREF1078_RS05945 0.42 +1.9 524,601 - HMPREF1078_RS05945 0.45 +0.7 524,635 - HMPREF1078_RS05945 0.47 -0.9 524,642 + HMPREF1078_RS05945 0.47 -1.1 524,767 - HMPREF1078_RS05945 0.54 +1.1 524,819 - HMPREF1078_RS05945 0.57 +0.5 524,820 + HMPREF1078_RS05945 0.57 +0.5 524,821 - HMPREF1078_RS05945 0.57 +0.3 524,850 - HMPREF1078_RS05945 0.59 -0.3 524,857 + HMPREF1078_RS05945 0.59 +0.0 524,858 - HMPREF1078_RS05945 0.59 +0.4 524,982 + HMPREF1078_RS05945 0.66 +0.0 524,983 - HMPREF1078_RS05945 0.66 -0.8 525,000 - HMPREF1078_RS05945 0.67 -2.4 525,000 - HMPREF1078_RS05945 0.67 +0.2 525,016 - HMPREF1078_RS05945 0.68 -0.3 525,016 - HMPREF1078_RS05945 0.68 +0.3 525,098 + HMPREF1078_RS05945 0.72 +0.4 525,099 - HMPREF1078_RS05945 0.72 +0.4 525,122 + HMPREF1078_RS05945 0.74 -0.3 525,174 + HMPREF1078_RS05945 0.77 +0.1 525,174 + HMPREF1078_RS05945 0.77 +0.4 525,175 - HMPREF1078_RS05945 0.77 +0.6 525,199 - HMPREF1078_RS05945 0.78 -0.7 525,213 + HMPREF1078_RS05945 0.79 +0.5 525,399 - HMPREF1078_RS05945 0.89 +0.2 525,399 - HMPREF1078_RS05945 0.89 -0.1 525,399 - HMPREF1078_RS05945 0.89 +0.8 525,530 + +0.5 525,531 - -0.4 525,543 + +0.3 525,565 - +1.4 525,569 - -2.0 525,602 + -1.1 525,603 - -2.4 525,621 - +0.3
Or see this region's nucleotide sequence