Experiment: Mucin from porcine stomach type III 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04340 and HMPREF1078_RS04345 are separated by 81 nucleotides HMPREF1078_RS04345 and HMPREF1078_RS04350 are separated by 228 nucleotides
HMPREF1078_RS04340: HMPREF1078_RS04340 - hypothetical protein, at 99,394 to 100,689
_RS04340
HMPREF1078_RS04345: HMPREF1078_RS04345 - phosphate ABC transporter substrate-binding protein, at 100,771 to 101,589
_RS04345
HMPREF1078_RS04350: HMPREF1078_RS04350 - nitronate monooxygenase, at 101,818 to 102,906
_RS04350
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1
2 at 99.863 kb on + strand, within HMPREF1078_RS04340 at 99.864 kb on - strand, within HMPREF1078_RS04340 at 99.895 kb on + strand, within HMPREF1078_RS04340 at 100.105 kb on + strand, within HMPREF1078_RS04340 at 100.195 kb on + strand, within HMPREF1078_RS04340 at 100.195 kb on + strand, within HMPREF1078_RS04340 at 100.195 kb on + strand, within HMPREF1078_RS04340 at 100.195 kb on + strand, within HMPREF1078_RS04340 at 100.195 kb on + strand, within HMPREF1078_RS04340 at 100.195 kb on + strand, within HMPREF1078_RS04340 at 100.195 kb on + strand, within HMPREF1078_RS04340 at 100.195 kb on - strand, within HMPREF1078_RS04340 at 100.196 kb on - strand, within HMPREF1078_RS04340 at 100.196 kb on - strand, within HMPREF1078_RS04340 at 100.196 kb on - strand, within HMPREF1078_RS04340 at 100.196 kb on - strand, within HMPREF1078_RS04340 at 100.196 kb on - strand, within HMPREF1078_RS04340 at 100.196 kb on - strand, within HMPREF1078_RS04340 at 100.210 kb on + strand, within HMPREF1078_RS04340 at 100.284 kb on - strand, within HMPREF1078_RS04340 at 100.284 kb on - strand, within HMPREF1078_RS04340 at 100.287 kb on + strand, within HMPREF1078_RS04340 at 100.287 kb on + strand, within HMPREF1078_RS04340 at 100.288 kb on - strand, within HMPREF1078_RS04340 at 100.288 kb on - strand, within HMPREF1078_RS04340 at 100.454 kb on - strand, within HMPREF1078_RS04340 at 100.591 kb on + strand at 100.591 kb on + strand at 100.658 kb on + strand at 100.658 kb on + strand at 100.658 kb on + strand at 100.680 kb on + strand at 100.681 kb on - strand at 100.690 kb on + strand at 100.698 kb on + strand at 100.699 kb on - strand at 100.732 kb on - strand at 100.809 kb on + strand at 100.809 kb on + strand at 100.818 kb on - strand at 100.919 kb on + strand, within HMPREF1078_RS04345 at 100.950 kb on + strand, within HMPREF1078_RS04345 at 100.998 kb on + strand, within HMPREF1078_RS04345 at 101.199 kb on - strand, within HMPREF1078_RS04345 at 101.230 kb on + strand, within HMPREF1078_RS04345 at 101.231 kb on - strand, within HMPREF1078_RS04345 at 101.231 kb on - strand, within HMPREF1078_RS04345 at 101.269 kb on + strand, within HMPREF1078_RS04345 at 101.269 kb on + strand, within HMPREF1078_RS04345 at 101.270 kb on - strand, within HMPREF1078_RS04345 at 101.270 kb on - strand, within HMPREF1078_RS04345 at 101.271 kb on + strand, within HMPREF1078_RS04345 at 101.271 kb on + strand, within HMPREF1078_RS04345 at 101.272 kb on - strand, within HMPREF1078_RS04345 at 101.286 kb on + strand, within HMPREF1078_RS04345 at 101.366 kb on + strand, within HMPREF1078_RS04345 at 101.479 kb on + strand, within HMPREF1078_RS04345 at 101.479 kb on + strand, within HMPREF1078_RS04345 at 101.480 kb on - strand, within HMPREF1078_RS04345 at 101.480 kb on - strand, within HMPREF1078_RS04345 at 101.527 kb on + strand at 101.527 kb on + strand at 101.529 kb on + strand at 101.530 kb on - strand at 101.573 kb on - strand at 101.588 kb on - strand at 101.601 kb on + strand at 101.602 kb on - strand at 101.603 kb on + strand at 101.604 kb on - strand at 101.604 kb on - strand at 101.604 kb on - strand at 101.604 kb on - strand at 101.644 kb on + strand at 101.645 kb on - strand at 101.645 kb on - strand at 101.646 kb on + strand at 101.646 kb on + strand at 101.647 kb on - strand at 101.647 kb on - strand at 101.647 kb on - strand at 101.647 kb on - strand at 101.660 kb on - strand at 101.724 kb on + strand at 101.734 kb on + strand at 101.734 kb on + strand at 101.787 kb on + strand at 101.787 kb on + strand at 101.787 kb on + strand at 101.788 kb on - strand at 101.790 kb on - strand at 101.790 kb on - strand at 101.790 kb on - strand at 101.790 kb on - strand at 101.802 kb on + strand at 101.811 kb on + strand at 101.812 kb on - strand at 101.812 kb on - strand at 101.815 kb on + strand at 101.882 kb on + strand at 101.882 kb on + strand at 101.966 kb on + strand, within HMPREF1078_RS04350 at 101.966 kb on + strand, within HMPREF1078_RS04350 at 101.967 kb on - strand, within HMPREF1078_RS04350 at 101.967 kb on - strand, within HMPREF1078_RS04350 at 101.967 kb on - strand, within HMPREF1078_RS04350 at 102.222 kb on + strand, within HMPREF1078_RS04350 at 102.222 kb on + strand, within HMPREF1078_RS04350 at 102.265 kb on + strand, within HMPREF1078_RS04350 at 102.265 kb on + strand, within HMPREF1078_RS04350 at 102.320 kb on + strand, within HMPREF1078_RS04350 at 102.417 kb on + strand, within HMPREF1078_RS04350 at 102.418 kb on - strand, within HMPREF1078_RS04350 at 102.455 kb on - strand, within HMPREF1078_RS04350 at 102.568 kb on + strand, within HMPREF1078_RS04350
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/mL (C) remove 99,863 + HMPREF1078_RS04340 0.36 +0.5 99,864 - HMPREF1078_RS04340 0.36 -0.6 99,895 + HMPREF1078_RS04340 0.39 -0.7 100,105 + HMPREF1078_RS04340 0.55 -1.1 100,195 + HMPREF1078_RS04340 0.62 +0.2 100,195 + HMPREF1078_RS04340 0.62 -0.8 100,195 + HMPREF1078_RS04340 0.62 +0.8 100,195 + HMPREF1078_RS04340 0.62 -0.8 100,195 + HMPREF1078_RS04340 0.62 -0.0 100,195 + HMPREF1078_RS04340 0.62 -1.4 100,195 + HMPREF1078_RS04340 0.62 -0.5 100,195 - HMPREF1078_RS04340 0.62 -0.9 100,196 - HMPREF1078_RS04340 0.62 +0.5 100,196 - HMPREF1078_RS04340 0.62 -0.5 100,196 - HMPREF1078_RS04340 0.62 -0.2 100,196 - HMPREF1078_RS04340 0.62 +1.9 100,196 - HMPREF1078_RS04340 0.62 -0.5 100,196 - HMPREF1078_RS04340 0.62 -1.5 100,210 + HMPREF1078_RS04340 0.63 -1.0 100,284 - HMPREF1078_RS04340 0.69 -1.2 100,284 - HMPREF1078_RS04340 0.69 -1.3 100,287 + HMPREF1078_RS04340 0.69 -0.6 100,287 + HMPREF1078_RS04340 0.69 +0.1 100,288 - HMPREF1078_RS04340 0.69 -1.0 100,288 - HMPREF1078_RS04340 0.69 +0.0 100,454 - HMPREF1078_RS04340 0.82 -0.4 100,591 + +0.6 100,591 + +0.4 100,658 + +0.7 100,658 + -1.1 100,658 + -0.7 100,680 + +0.9 100,681 - +0.9 100,690 + +0.2 100,698 + +0.2 100,699 - -1.8 100,732 - +0.7 100,809 + -0.5 100,809 + -0.2 100,818 - +0.1 100,919 + HMPREF1078_RS04345 0.18 +0.0 100,950 + HMPREF1078_RS04345 0.22 -0.3 100,998 + HMPREF1078_RS04345 0.28 +0.9 101,199 - HMPREF1078_RS04345 0.52 +0.3 101,230 + HMPREF1078_RS04345 0.56 +0.2 101,231 - HMPREF1078_RS04345 0.56 -0.5 101,231 - HMPREF1078_RS04345 0.56 -0.5 101,269 + HMPREF1078_RS04345 0.61 -1.5 101,269 + HMPREF1078_RS04345 0.61 -0.9 101,270 - HMPREF1078_RS04345 0.61 -1.3 101,270 - HMPREF1078_RS04345 0.61 -0.1 101,271 + HMPREF1078_RS04345 0.61 -1.1 101,271 + HMPREF1078_RS04345 0.61 -0.7 101,272 - HMPREF1078_RS04345 0.61 -0.6 101,286 + HMPREF1078_RS04345 0.63 -0.5 101,366 + HMPREF1078_RS04345 0.73 -0.2 101,479 + HMPREF1078_RS04345 0.86 -0.1 101,479 + HMPREF1078_RS04345 0.86 +1.6 101,480 - HMPREF1078_RS04345 0.87 -2.3 101,480 - HMPREF1078_RS04345 0.87 +0.3 101,527 + +0.4 101,527 + -1.8 101,529 + -1.5 101,530 - -1.5 101,573 - +1.5 101,588 - +0.4 101,601 + -1.6 101,602 - -0.7 101,603 + +0.2 101,604 - +0.6 101,604 - -2.0 101,604 - +0.2 101,604 - +0.1 101,644 + -0.3 101,645 - -0.1 101,645 - -0.6 101,646 + +0.2 101,646 + +0.0 101,647 - +0.5 101,647 - +1.4 101,647 - -0.2 101,647 - +0.4 101,660 - -0.6 101,724 + -1.8 101,734 + +0.2 101,734 + -0.5 101,787 + +0.1 101,787 + -0.5 101,787 + -1.8 101,788 - -2.0 101,790 - -0.4 101,790 - +0.4 101,790 - -0.3 101,790 - +0.6 101,802 + -0.2 101,811 + -2.2 101,812 - -1.4 101,812 - -0.1 101,815 + -1.3 101,882 + +0.1 101,882 + +1.2 101,966 + HMPREF1078_RS04350 0.14 -0.6 101,966 + HMPREF1078_RS04350 0.14 +1.0 101,967 - HMPREF1078_RS04350 0.14 +0.1 101,967 - HMPREF1078_RS04350 0.14 +1.0 101,967 - HMPREF1078_RS04350 0.14 +0.0 102,222 + HMPREF1078_RS04350 0.37 -0.3 102,222 + HMPREF1078_RS04350 0.37 +0.2 102,265 + HMPREF1078_RS04350 0.41 -0.2 102,265 + HMPREF1078_RS04350 0.41 -0.4 102,320 + HMPREF1078_RS04350 0.46 +0.2 102,417 + HMPREF1078_RS04350 0.55 -0.9 102,418 - HMPREF1078_RS04350 0.55 -1.1 102,455 - HMPREF1078_RS04350 0.58 +0.3 102,568 + HMPREF1078_RS04350 0.69 +1.6
Or see this region's nucleotide sequence