Experiment: Mucin from porcine stomach type III 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02000 and HMPREF1078_RS02005 are separated by 65 nucleotides HMPREF1078_RS02005 and HMPREF1078_RS02010 are separated by 2 nucleotides HMPREF1078_RS02010 and HMPREF1078_RS02015 are separated by 108 nucleotides
HMPREF1078_RS02000: HMPREF1078_RS02000 - DNA repair protein RecN, at 493,546 to 495,210
_RS02000
HMPREF1078_RS02005: HMPREF1078_RS02005 - hypothetical protein, at 495,276 to 496,052
_RS02005
HMPREF1078_RS02010: HMPREF1078_RS02010 - hypothetical protein, at 496,055 to 496,495
_RS02010
HMPREF1078_RS02015: HMPREF1078_RS02015 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 496,604 to 497,353
_RS02015
Position (kb) 495
496
497 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 494.279 kb on + strand, within HMPREF1078_RS02000 at 494.317 kb on + strand, within HMPREF1078_RS02000 at 494.362 kb on + strand, within HMPREF1078_RS02000 at 494.363 kb on - strand, within HMPREF1078_RS02000 at 494.371 kb on - strand, within HMPREF1078_RS02000 at 494.457 kb on + strand, within HMPREF1078_RS02000 at 494.457 kb on + strand, within HMPREF1078_RS02000 at 494.460 kb on + strand, within HMPREF1078_RS02000 at 494.461 kb on - strand, within HMPREF1078_RS02000 at 494.461 kb on - strand, within HMPREF1078_RS02000 at 494.461 kb on - strand, within HMPREF1078_RS02000 at 494.461 kb on - strand, within HMPREF1078_RS02000 at 494.461 kb on - strand, within HMPREF1078_RS02000 at 494.467 kb on + strand, within HMPREF1078_RS02000 at 494.467 kb on + strand, within HMPREF1078_RS02000 at 494.467 kb on + strand, within HMPREF1078_RS02000 at 494.536 kb on - strand, within HMPREF1078_RS02000 at 494.536 kb on - strand, within HMPREF1078_RS02000 at 494.650 kb on - strand, within HMPREF1078_RS02000 at 494.703 kb on - strand, within HMPREF1078_RS02000 at 494.743 kb on - strand, within HMPREF1078_RS02000 at 494.864 kb on + strand, within HMPREF1078_RS02000 at 494.865 kb on - strand, within HMPREF1078_RS02000 at 494.868 kb on + strand, within HMPREF1078_RS02000 at 494.868 kb on + strand, within HMPREF1078_RS02000 at 494.868 kb on + strand, within HMPREF1078_RS02000 at 494.868 kb on + strand, within HMPREF1078_RS02000 at 494.868 kb on + strand, within HMPREF1078_RS02000 at 494.869 kb on - strand, within HMPREF1078_RS02000 at 494.869 kb on - strand, within HMPREF1078_RS02000 at 494.946 kb on + strand, within HMPREF1078_RS02000 at 494.948 kb on + strand, within HMPREF1078_RS02000 at 494.981 kb on + strand, within HMPREF1078_RS02000 at 494.982 kb on - strand, within HMPREF1078_RS02000 at 495.059 kb on - strand at 495.060 kb on + strand at 495.061 kb on - strand at 495.061 kb on - strand at 495.061 kb on - strand at 495.138 kb on + strand at 495.139 kb on - strand at 495.250 kb on + strand at 495.251 kb on - strand at 495.295 kb on + strand at 495.296 kb on - strand at 495.302 kb on - strand at 495.432 kb on + strand, within HMPREF1078_RS02005 at 495.437 kb on + strand, within HMPREF1078_RS02005 at 495.437 kb on + strand, within HMPREF1078_RS02005 at 495.437 kb on + strand, within HMPREF1078_RS02005 at 495.438 kb on - strand, within HMPREF1078_RS02005 at 495.520 kb on + strand, within HMPREF1078_RS02005 at 495.521 kb on - strand, within HMPREF1078_RS02005 at 495.522 kb on + strand, within HMPREF1078_RS02005 at 495.524 kb on + strand, within HMPREF1078_RS02005 at 495.524 kb on + strand, within HMPREF1078_RS02005 at 495.524 kb on + strand, within HMPREF1078_RS02005 at 495.524 kb on + strand, within HMPREF1078_RS02005 at 495.525 kb on - strand, within HMPREF1078_RS02005 at 495.560 kb on + strand, within HMPREF1078_RS02005 at 495.588 kb on + strand, within HMPREF1078_RS02005 at 495.588 kb on + strand, within HMPREF1078_RS02005 at 495.588 kb on + strand, within HMPREF1078_RS02005 at 495.589 kb on - strand, within HMPREF1078_RS02005 at 495.642 kb on + strand, within HMPREF1078_RS02005 at 495.642 kb on + strand, within HMPREF1078_RS02005 at 495.643 kb on - strand, within HMPREF1078_RS02005 at 495.648 kb on - strand, within HMPREF1078_RS02005 at 495.728 kb on + strand, within HMPREF1078_RS02005 at 495.729 kb on - strand, within HMPREF1078_RS02005 at 495.729 kb on - strand, within HMPREF1078_RS02005 at 495.737 kb on + strand, within HMPREF1078_RS02005 at 495.737 kb on + strand, within HMPREF1078_RS02005 at 495.738 kb on - strand, within HMPREF1078_RS02005 at 495.738 kb on - strand, within HMPREF1078_RS02005 at 495.771 kb on + strand, within HMPREF1078_RS02005 at 495.783 kb on + strand, within HMPREF1078_RS02005 at 495.807 kb on - strand, within HMPREF1078_RS02005 at 495.856 kb on - strand, within HMPREF1078_RS02005 at 495.908 kb on + strand, within HMPREF1078_RS02005 at 495.909 kb on - strand, within HMPREF1078_RS02005 at 495.966 kb on + strand, within HMPREF1078_RS02005 at 496.037 kb on - strand at 496.053 kb on + strand at 496.113 kb on + strand, within HMPREF1078_RS02010 at 496.113 kb on + strand, within HMPREF1078_RS02010 at 496.170 kb on - strand, within HMPREF1078_RS02010 at 496.246 kb on + strand, within HMPREF1078_RS02010 at 496.333 kb on + strand, within HMPREF1078_RS02010 at 496.334 kb on - strand, within HMPREF1078_RS02010 at 496.339 kb on + strand, within HMPREF1078_RS02010 at 496.388 kb on - strand, within HMPREF1078_RS02010 at 496.457 kb on + strand at 496.458 kb on - strand at 496.458 kb on - strand at 496.458 kb on - strand at 496.489 kb on + strand at 496.489 kb on + strand at 496.493 kb on + strand at 496.493 kb on + strand at 496.493 kb on + strand at 496.493 kb on + strand at 496.494 kb on - strand at 496.494 kb on - strand at 496.496 kb on + strand at 496.496 kb on + strand at 496.496 kb on + strand at 496.497 kb on - strand at 496.497 kb on - strand at 496.509 kb on - strand at 496.511 kb on - strand at 496.511 kb on - strand at 496.511 kb on - strand at 496.512 kb on + strand at 496.512 kb on + strand at 496.515 kb on + strand at 496.524 kb on - strand at 496.535 kb on - strand at 496.548 kb on + strand at 496.569 kb on + strand at 496.595 kb on + strand at 496.596 kb on - strand at 496.603 kb on - strand at 496.675 kb on + strand at 496.675 kb on + strand at 496.748 kb on - strand, within HMPREF1078_RS02015 at 496.749 kb on + strand, within HMPREF1078_RS02015 at 496.749 kb on + strand, within HMPREF1078_RS02015 at 496.749 kb on + strand, within HMPREF1078_RS02015 at 496.750 kb on - strand, within HMPREF1078_RS02015 at 496.755 kb on + strand, within HMPREF1078_RS02015 at 496.756 kb on - strand, within HMPREF1078_RS02015 at 496.812 kb on + strand, within HMPREF1078_RS02015 at 496.813 kb on - strand, within HMPREF1078_RS02015 at 496.816 kb on - strand, within HMPREF1078_RS02015 at 496.838 kb on + strand, within HMPREF1078_RS02015 at 496.838 kb on + strand, within HMPREF1078_RS02015 at 496.839 kb on - strand, within HMPREF1078_RS02015 at 496.839 kb on - strand, within HMPREF1078_RS02015 at 496.870 kb on - strand, within HMPREF1078_RS02015 at 496.870 kb on - strand, within HMPREF1078_RS02015 at 496.871 kb on + strand, within HMPREF1078_RS02015 at 496.871 kb on + strand, within HMPREF1078_RS02015 at 496.872 kb on - strand, within HMPREF1078_RS02015 at 496.872 kb on - strand, within HMPREF1078_RS02015 at 496.949 kb on - strand, within HMPREF1078_RS02015 at 497.049 kb on + strand, within HMPREF1078_RS02015 at 497.049 kb on + strand, within HMPREF1078_RS02015 at 497.049 kb on + strand, within HMPREF1078_RS02015 at 497.050 kb on - strand, within HMPREF1078_RS02015 at 497.050 kb on - strand, within HMPREF1078_RS02015 at 497.050 kb on - strand, within HMPREF1078_RS02015
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/mL (C) remove 494,279 + HMPREF1078_RS02000 0.44 +0.7 494,317 + HMPREF1078_RS02000 0.46 -0.8 494,362 + HMPREF1078_RS02000 0.49 +0.3 494,363 - HMPREF1078_RS02000 0.49 -0.1 494,371 - HMPREF1078_RS02000 0.50 -0.4 494,457 + HMPREF1078_RS02000 0.55 -0.5 494,457 + HMPREF1078_RS02000 0.55 +0.3 494,460 + HMPREF1078_RS02000 0.55 +0.3 494,461 - HMPREF1078_RS02000 0.55 +1.9 494,461 - HMPREF1078_RS02000 0.55 -0.4 494,461 - HMPREF1078_RS02000 0.55 +0.4 494,461 - HMPREF1078_RS02000 0.55 -0.2 494,461 - HMPREF1078_RS02000 0.55 +1.0 494,467 + HMPREF1078_RS02000 0.55 -0.3 494,467 + HMPREF1078_RS02000 0.55 -1.2 494,467 + HMPREF1078_RS02000 0.55 +0.7 494,536 - HMPREF1078_RS02000 0.59 -0.2 494,536 - HMPREF1078_RS02000 0.59 -0.4 494,650 - HMPREF1078_RS02000 0.66 -0.8 494,703 - HMPREF1078_RS02000 0.69 -1.4 494,743 - HMPREF1078_RS02000 0.72 +0.5 494,864 + HMPREF1078_RS02000 0.79 +0.3 494,865 - HMPREF1078_RS02000 0.79 +0.4 494,868 + HMPREF1078_RS02000 0.79 +1.7 494,868 + HMPREF1078_RS02000 0.79 +0.6 494,868 + HMPREF1078_RS02000 0.79 +1.0 494,868 + HMPREF1078_RS02000 0.79 +0.0 494,868 + HMPREF1078_RS02000 0.79 +0.6 494,869 - HMPREF1078_RS02000 0.79 +2.3 494,869 - HMPREF1078_RS02000 0.79 -0.4 494,946 + HMPREF1078_RS02000 0.84 +0.9 494,948 + HMPREF1078_RS02000 0.84 -0.4 494,981 + HMPREF1078_RS02000 0.86 +1.9 494,982 - HMPREF1078_RS02000 0.86 +2.3 495,059 - +0.1 495,060 + +0.7 495,061 - -0.5 495,061 - -2.0 495,061 - -1.5 495,138 + +0.5 495,139 - -0.1 495,250 + +0.3 495,251 - +0.8 495,295 + +0.5 495,296 - -0.7 495,302 - -0.8 495,432 + HMPREF1078_RS02005 0.20 +0.2 495,437 + HMPREF1078_RS02005 0.21 -4.2 495,437 + HMPREF1078_RS02005 0.21 +0.6 495,437 + HMPREF1078_RS02005 0.21 -0.5 495,438 - HMPREF1078_RS02005 0.21 +0.5 495,520 + HMPREF1078_RS02005 0.31 -0.3 495,521 - HMPREF1078_RS02005 0.32 +0.1 495,522 + HMPREF1078_RS02005 0.32 +0.3 495,524 + HMPREF1078_RS02005 0.32 -1.1 495,524 + HMPREF1078_RS02005 0.32 +1.6 495,524 + HMPREF1078_RS02005 0.32 -2.3 495,524 + HMPREF1078_RS02005 0.32 -0.6 495,525 - HMPREF1078_RS02005 0.32 +0.9 495,560 + HMPREF1078_RS02005 0.37 -0.6 495,588 + HMPREF1078_RS02005 0.40 +3.3 495,588 + HMPREF1078_RS02005 0.40 -2.5 495,588 + HMPREF1078_RS02005 0.40 +0.5 495,589 - HMPREF1078_RS02005 0.40 +0.9 495,642 + HMPREF1078_RS02005 0.47 -0.8 495,642 + HMPREF1078_RS02005 0.47 +1.2 495,643 - HMPREF1078_RS02005 0.47 -1.6 495,648 - HMPREF1078_RS02005 0.48 +1.8 495,728 + HMPREF1078_RS02005 0.58 +0.8 495,729 - HMPREF1078_RS02005 0.58 +0.9 495,729 - HMPREF1078_RS02005 0.58 -0.5 495,737 + HMPREF1078_RS02005 0.59 +0.3 495,737 + HMPREF1078_RS02005 0.59 +1.3 495,738 - HMPREF1078_RS02005 0.59 +0.4 495,738 - HMPREF1078_RS02005 0.59 +0.1 495,771 + HMPREF1078_RS02005 0.64 -0.2 495,783 + HMPREF1078_RS02005 0.65 +1.3 495,807 - HMPREF1078_RS02005 0.68 +0.1 495,856 - HMPREF1078_RS02005 0.75 +0.7 495,908 + HMPREF1078_RS02005 0.81 +0.6 495,909 - HMPREF1078_RS02005 0.81 +0.1 495,966 + HMPREF1078_RS02005 0.89 +0.1 496,037 - +4.1 496,053 + +1.0 496,113 + HMPREF1078_RS02010 0.13 -0.4 496,113 + HMPREF1078_RS02010 0.13 -0.3 496,170 - HMPREF1078_RS02010 0.26 -1.4 496,246 + HMPREF1078_RS02010 0.43 -0.9 496,333 + HMPREF1078_RS02010 0.63 +1.0 496,334 - HMPREF1078_RS02010 0.63 +0.5 496,339 + HMPREF1078_RS02010 0.64 +0.9 496,388 - HMPREF1078_RS02010 0.76 -0.1 496,457 + -0.1 496,458 - +0.1 496,458 - -0.7 496,458 - +0.8 496,489 + +1.0 496,489 + -0.5 496,493 + -1.1 496,493 + -1.3 496,493 + -1.6 496,493 + +0.2 496,494 - -1.1 496,494 - +0.9 496,496 + -0.6 496,496 + +1.2 496,496 + -0.2 496,497 - +0.7 496,497 - +0.3 496,509 - -0.3 496,511 - +0.6 496,511 - +0.2 496,511 - +0.1 496,512 + +0.6 496,512 + -0.2 496,515 + -1.0 496,524 - +0.8 496,535 - +0.4 496,548 + +0.1 496,569 + -0.9 496,595 + +0.2 496,596 - +1.2 496,603 - +0.1 496,675 + -0.3 496,675 + -0.8 496,748 - HMPREF1078_RS02015 0.19 +1.2 496,749 + HMPREF1078_RS02015 0.19 -0.9 496,749 + HMPREF1078_RS02015 0.19 -1.2 496,749 + HMPREF1078_RS02015 0.19 +0.1 496,750 - HMPREF1078_RS02015 0.19 -1.8 496,755 + HMPREF1078_RS02015 0.20 +0.2 496,756 - HMPREF1078_RS02015 0.20 +0.3 496,812 + HMPREF1078_RS02015 0.28 -0.7 496,813 - HMPREF1078_RS02015 0.28 -1.8 496,816 - HMPREF1078_RS02015 0.28 -0.8 496,838 + HMPREF1078_RS02015 0.31 +0.9 496,838 + HMPREF1078_RS02015 0.31 +0.2 496,839 - HMPREF1078_RS02015 0.31 -0.2 496,839 - HMPREF1078_RS02015 0.31 -1.4 496,870 - HMPREF1078_RS02015 0.35 -0.3 496,870 - HMPREF1078_RS02015 0.35 +0.2 496,871 + HMPREF1078_RS02015 0.36 -1.2 496,871 + HMPREF1078_RS02015 0.36 -0.6 496,872 - HMPREF1078_RS02015 0.36 -0.7 496,872 - HMPREF1078_RS02015 0.36 +0.4 496,949 - HMPREF1078_RS02015 0.46 +0.1 497,049 + HMPREF1078_RS02015 0.59 -1.2 497,049 + HMPREF1078_RS02015 0.59 -2.1 497,049 + HMPREF1078_RS02015 0.59 +0.9 497,050 - HMPREF1078_RS02015 0.59 -1.3 497,050 - HMPREF1078_RS02015 0.59 +1.5 497,050 - HMPREF1078_RS02015 0.59 -2.2
Or see this region's nucleotide sequence