Experiment: Lentilan from mushroom 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16700 and HMPREF1078_RS16705 are separated by 97 nucleotides HMPREF1078_RS16705 and HMPREF1078_RS16710 are separated by 29 nucleotides
HMPREF1078_RS16700: HMPREF1078_RS16700 - PatB family C-S lyase, at 54,879 to 56,054
_RS16700
HMPREF1078_RS16705: HMPREF1078_RS16705 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 56,152 to 56,730
_RS16705
HMPREF1078_RS16710: HMPREF1078_RS16710 - chorismate synthase, at 56,760 to 57,830
_RS16710
Position (kb) 56
57 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 55.152 kb on - strand, within HMPREF1078_RS16700 at 55.157 kb on + strand, within HMPREF1078_RS16700 at 55.157 kb on + strand, within HMPREF1078_RS16700 at 55.158 kb on - strand, within HMPREF1078_RS16700 at 55.222 kb on + strand, within HMPREF1078_RS16700 at 55.242 kb on + strand, within HMPREF1078_RS16700 at 55.242 kb on + strand, within HMPREF1078_RS16700 at 55.309 kb on + strand, within HMPREF1078_RS16700 at 55.320 kb on + strand, within HMPREF1078_RS16700 at 55.394 kb on + strand, within HMPREF1078_RS16700 at 55.463 kb on + strand, within HMPREF1078_RS16700 at 55.464 kb on - strand, within HMPREF1078_RS16700 at 55.464 kb on - strand, within HMPREF1078_RS16700 at 55.465 kb on + strand, within HMPREF1078_RS16700 at 55.465 kb on + strand, within HMPREF1078_RS16700 at 55.487 kb on - strand, within HMPREF1078_RS16700 at 55.514 kb on + strand, within HMPREF1078_RS16700 at 55.515 kb on - strand, within HMPREF1078_RS16700 at 55.566 kb on - strand, within HMPREF1078_RS16700 at 55.704 kb on + strand, within HMPREF1078_RS16700 at 55.727 kb on + strand, within HMPREF1078_RS16700 at 55.727 kb on + strand, within HMPREF1078_RS16700 at 55.727 kb on + strand, within HMPREF1078_RS16700 at 55.728 kb on - strand, within HMPREF1078_RS16700 at 55.728 kb on - strand, within HMPREF1078_RS16700 at 55.731 kb on + strand, within HMPREF1078_RS16700 at 55.764 kb on + strand, within HMPREF1078_RS16700 at 55.764 kb on + strand, within HMPREF1078_RS16700 at 55.764 kb on + strand, within HMPREF1078_RS16700 at 55.764 kb on + strand, within HMPREF1078_RS16700 at 55.764 kb on + strand, within HMPREF1078_RS16700 at 55.764 kb on + strand, within HMPREF1078_RS16700 at 55.764 kb on + strand, within HMPREF1078_RS16700 at 55.765 kb on - strand, within HMPREF1078_RS16700 at 55.765 kb on - strand, within HMPREF1078_RS16700 at 55.765 kb on - strand, within HMPREF1078_RS16700 at 55.765 kb on - strand, within HMPREF1078_RS16700 at 55.765 kb on - strand, within HMPREF1078_RS16700 at 55.767 kb on - strand, within HMPREF1078_RS16700 at 55.798 kb on - strand, within HMPREF1078_RS16700 at 55.856 kb on - strand, within HMPREF1078_RS16700 at 55.900 kb on + strand, within HMPREF1078_RS16700 at 55.901 kb on - strand, within HMPREF1078_RS16700 at 55.917 kb on - strand, within HMPREF1078_RS16700 at 55.974 kb on - strand at 55.974 kb on - strand at 56.045 kb on + strand at 56.111 kb on + strand at 56.128 kb on + strand at 56.137 kb on + strand at 56.169 kb on + strand at 56.169 kb on + strand at 56.184 kb on + strand at 56.188 kb on + strand at 56.188 kb on + strand at 56.258 kb on - strand, within HMPREF1078_RS16705 at 56.321 kb on + strand, within HMPREF1078_RS16705 at 56.334 kb on + strand, within HMPREF1078_RS16705 at 56.362 kb on + strand, within HMPREF1078_RS16705 at 56.371 kb on + strand, within HMPREF1078_RS16705 at 56.371 kb on + strand, within HMPREF1078_RS16705 at 56.371 kb on + strand, within HMPREF1078_RS16705 at 56.387 kb on + strand, within HMPREF1078_RS16705 at 56.388 kb on - strand, within HMPREF1078_RS16705 at 56.418 kb on - strand, within HMPREF1078_RS16705 at 56.490 kb on + strand, within HMPREF1078_RS16705 at 56.513 kb on + strand, within HMPREF1078_RS16705 at 56.513 kb on + strand, within HMPREF1078_RS16705 at 56.753 kb on - strand at 56.765 kb on + strand at 56.765 kb on + strand at 56.766 kb on - strand at 56.780 kb on - strand at 56.781 kb on + strand at 56.781 kb on + strand at 56.782 kb on - strand at 56.830 kb on + strand at 56.831 kb on - strand at 56.831 kb on - strand at 56.834 kb on - strand at 56.860 kb on + strand at 56.860 kb on + strand at 56.861 kb on - strand at 56.864 kb on + strand at 56.865 kb on - strand at 56.873 kb on + strand, within HMPREF1078_RS16710 at 56.873 kb on + strand, within HMPREF1078_RS16710 at 56.947 kb on + strand, within HMPREF1078_RS16710 at 56.963 kb on + strand, within HMPREF1078_RS16710 at 56.967 kb on + strand, within HMPREF1078_RS16710 at 56.967 kb on + strand, within HMPREF1078_RS16710 at 56.968 kb on - strand, within HMPREF1078_RS16710 at 56.968 kb on - strand, within HMPREF1078_RS16710 at 57.036 kb on + strand, within HMPREF1078_RS16710 at 57.036 kb on + strand, within HMPREF1078_RS16710 at 57.041 kb on + strand, within HMPREF1078_RS16710 at 57.044 kb on + strand, within HMPREF1078_RS16710 at 57.044 kb on + strand, within HMPREF1078_RS16710 at 57.044 kb on + strand, within HMPREF1078_RS16710 at 57.044 kb on + strand, within HMPREF1078_RS16710 at 57.044 kb on + strand, within HMPREF1078_RS16710 at 57.057 kb on + strand, within HMPREF1078_RS16710 at 57.079 kb on + strand, within HMPREF1078_RS16710 at 57.079 kb on - strand, within HMPREF1078_RS16710 at 57.097 kb on - strand, within HMPREF1078_RS16710 at 57.097 kb on - strand, within HMPREF1078_RS16710 at 57.208 kb on + strand, within HMPREF1078_RS16710 at 57.209 kb on - strand, within HMPREF1078_RS16710 at 57.255 kb on + strand, within HMPREF1078_RS16710 at 57.264 kb on + strand, within HMPREF1078_RS16710 at 57.296 kb on - strand, within HMPREF1078_RS16710 at 57.366 kb on - strand, within HMPREF1078_RS16710 at 57.428 kb on - strand, within HMPREF1078_RS16710 at 57.495 kb on + strand, within HMPREF1078_RS16710 at 57.521 kb on - strand, within HMPREF1078_RS16710 at 57.522 kb on + strand, within HMPREF1078_RS16710 at 57.581 kb on + strand, within HMPREF1078_RS16710 at 57.601 kb on + strand, within HMPREF1078_RS16710 at 57.602 kb on - strand, within HMPREF1078_RS16710 at 57.611 kb on + strand, within HMPREF1078_RS16710 at 57.611 kb on + strand, within HMPREF1078_RS16710 at 57.629 kb on + strand, within HMPREF1078_RS16710 at 57.633 kb on + strand, within HMPREF1078_RS16710 at 57.633 kb on + strand, within HMPREF1078_RS16710 at 57.633 kb on + strand, within HMPREF1078_RS16710 at 57.634 kb on - strand, within HMPREF1078_RS16710 at 57.693 kb on - strand, within HMPREF1078_RS16710
Per-strain Table
Position Strand Gene LocusTag Fraction Lentilan from mushroom 2.5 mg/mL (C) remove 55,152 - HMPREF1078_RS16700 0.23 +0.8 55,157 + HMPREF1078_RS16700 0.24 +2.5 55,157 + HMPREF1078_RS16700 0.24 -0.2 55,158 - HMPREF1078_RS16700 0.24 -2.6 55,222 + HMPREF1078_RS16700 0.29 -0.9 55,242 + HMPREF1078_RS16700 0.31 +0.8 55,242 + HMPREF1078_RS16700 0.31 -1.1 55,309 + HMPREF1078_RS16700 0.37 -2.7 55,320 + HMPREF1078_RS16700 0.38 -0.6 55,394 + HMPREF1078_RS16700 0.44 -0.3 55,463 + HMPREF1078_RS16700 0.50 +0.3 55,464 - HMPREF1078_RS16700 0.50 -0.2 55,464 - HMPREF1078_RS16700 0.50 -0.4 55,465 + HMPREF1078_RS16700 0.50 +0.1 55,465 + HMPREF1078_RS16700 0.50 -1.9 55,487 - HMPREF1078_RS16700 0.52 -0.9 55,514 + HMPREF1078_RS16700 0.54 +0.9 55,515 - HMPREF1078_RS16700 0.54 -0.6 55,566 - HMPREF1078_RS16700 0.58 +2.3 55,704 + HMPREF1078_RS16700 0.70 +0.5 55,727 + HMPREF1078_RS16700 0.72 +3.1 55,727 + HMPREF1078_RS16700 0.72 -0.5 55,727 + HMPREF1078_RS16700 0.72 -0.2 55,728 - HMPREF1078_RS16700 0.72 -0.4 55,728 - HMPREF1078_RS16700 0.72 +0.2 55,731 + HMPREF1078_RS16700 0.72 -0.3 55,764 + HMPREF1078_RS16700 0.75 -0.7 55,764 + HMPREF1078_RS16700 0.75 -0.1 55,764 + HMPREF1078_RS16700 0.75 +1.0 55,764 + HMPREF1078_RS16700 0.75 +0.4 55,764 + HMPREF1078_RS16700 0.75 +0.5 55,764 + HMPREF1078_RS16700 0.75 -0.7 55,764 + HMPREF1078_RS16700 0.75 -1.2 55,765 - HMPREF1078_RS16700 0.75 -2.0 55,765 - HMPREF1078_RS16700 0.75 -0.4 55,765 - HMPREF1078_RS16700 0.75 +0.5 55,765 - HMPREF1078_RS16700 0.75 -0.4 55,765 - HMPREF1078_RS16700 0.75 -1.7 55,767 - HMPREF1078_RS16700 0.76 -0.8 55,798 - HMPREF1078_RS16700 0.78 +1.7 55,856 - HMPREF1078_RS16700 0.83 +0.5 55,900 + HMPREF1078_RS16700 0.87 -0.2 55,901 - HMPREF1078_RS16700 0.87 -0.5 55,917 - HMPREF1078_RS16700 0.88 +0.5 55,974 - -0.8 55,974 - -0.7 56,045 + -0.3 56,111 + +0.1 56,128 + -1.4 56,137 + -1.2 56,169 + +0.9 56,169 + +2.0 56,184 + -0.4 56,188 + -0.6 56,188 + -1.3 56,258 - HMPREF1078_RS16705 0.18 +1.5 56,321 + HMPREF1078_RS16705 0.29 -1.3 56,334 + HMPREF1078_RS16705 0.31 -1.8 56,362 + HMPREF1078_RS16705 0.36 -0.1 56,371 + HMPREF1078_RS16705 0.38 -0.3 56,371 + HMPREF1078_RS16705 0.38 -0.7 56,371 + HMPREF1078_RS16705 0.38 -0.6 56,387 + HMPREF1078_RS16705 0.41 +1.7 56,388 - HMPREF1078_RS16705 0.41 -0.1 56,418 - HMPREF1078_RS16705 0.46 +2.1 56,490 + HMPREF1078_RS16705 0.58 -1.3 56,513 + HMPREF1078_RS16705 0.62 +0.0 56,513 + HMPREF1078_RS16705 0.62 +0.5 56,753 - -0.3 56,765 + -0.8 56,765 + +0.9 56,766 - -1.9 56,780 - +0.8 56,781 + -1.2 56,781 + -0.5 56,782 - +0.5 56,830 + +0.2 56,831 - -0.7 56,831 - +0.3 56,834 - -0.8 56,860 + -0.1 56,860 + -0.5 56,861 - +1.1 56,864 + +2.1 56,865 - -0.4 56,873 + HMPREF1078_RS16710 0.11 -0.9 56,873 + HMPREF1078_RS16710 0.11 -0.8 56,947 + HMPREF1078_RS16710 0.17 -0.8 56,963 + HMPREF1078_RS16710 0.19 -2.7 56,967 + HMPREF1078_RS16710 0.19 -0.8 56,967 + HMPREF1078_RS16710 0.19 +1.0 56,968 - HMPREF1078_RS16710 0.19 +0.5 56,968 - HMPREF1078_RS16710 0.19 +0.8 57,036 + HMPREF1078_RS16710 0.26 +0.1 57,036 + HMPREF1078_RS16710 0.26 -0.2 57,041 + HMPREF1078_RS16710 0.26 -0.4 57,044 + HMPREF1078_RS16710 0.27 -1.4 57,044 + HMPREF1078_RS16710 0.27 -1.1 57,044 + HMPREF1078_RS16710 0.27 -1.1 57,044 + HMPREF1078_RS16710 0.27 -0.1 57,044 + HMPREF1078_RS16710 0.27 +1.1 57,057 + HMPREF1078_RS16710 0.28 +2.1 57,079 + HMPREF1078_RS16710 0.30 +0.2 57,079 - HMPREF1078_RS16710 0.30 -0.7 57,097 - HMPREF1078_RS16710 0.31 +0.3 57,097 - HMPREF1078_RS16710 0.31 -0.9 57,208 + HMPREF1078_RS16710 0.42 -0.1 57,209 - HMPREF1078_RS16710 0.42 +0.3 57,255 + HMPREF1078_RS16710 0.46 -1.4 57,264 + HMPREF1078_RS16710 0.47 -0.5 57,296 - HMPREF1078_RS16710 0.50 +0.8 57,366 - HMPREF1078_RS16710 0.57 -0.9 57,428 - HMPREF1078_RS16710 0.62 -0.1 57,495 + HMPREF1078_RS16710 0.69 +0.1 57,521 - HMPREF1078_RS16710 0.71 +0.5 57,522 + HMPREF1078_RS16710 0.71 -0.6 57,581 + HMPREF1078_RS16710 0.77 -0.9 57,601 + HMPREF1078_RS16710 0.79 +0.5 57,602 - HMPREF1078_RS16710 0.79 +0.3 57,611 + HMPREF1078_RS16710 0.79 +0.8 57,611 + HMPREF1078_RS16710 0.79 +0.1 57,629 + HMPREF1078_RS16710 0.81 -1.1 57,633 + HMPREF1078_RS16710 0.82 +1.1 57,633 + HMPREF1078_RS16710 0.82 +1.6 57,633 + HMPREF1078_RS16710 0.82 -1.1 57,634 - HMPREF1078_RS16710 0.82 -0.5 57,693 - HMPREF1078_RS16710 0.87 -1.9
Or see this region's nucleotide sequence