Experiment: Lentilan from mushroom 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08960 and HMPREF1078_RS08965 are separated by 279 nucleotides HMPREF1078_RS08965 and HMPREF1078_RS08970 are separated by 238 nucleotides
HMPREF1078_RS08960: HMPREF1078_RS08960 - sigma-54 dependent transcriptional regulator, at 391,139 to 392,461
_RS08960
HMPREF1078_RS08965: HMPREF1078_RS08965 - dihydrofolate reductase family protein, at 392,741 to 393,163
_RS08965
HMPREF1078_RS08970: HMPREF1078_RS08970 - RteC domain-containing protein, at 393,402 to 394,007
_RS08970
Position (kb) 392
393
394 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 391.768 kb on + strand, within HMPREF1078_RS08960 at 391.768 kb on + strand, within HMPREF1078_RS08960 at 391.769 kb on - strand, within HMPREF1078_RS08960 at 391.796 kb on + strand, within HMPREF1078_RS08960 at 391.884 kb on + strand, within HMPREF1078_RS08960 at 391.885 kb on - strand, within HMPREF1078_RS08960 at 392.098 kb on + strand, within HMPREF1078_RS08960 at 392.098 kb on + strand, within HMPREF1078_RS08960 at 392.098 kb on + strand, within HMPREF1078_RS08960 at 392.122 kb on + strand, within HMPREF1078_RS08960 at 392.153 kb on - strand, within HMPREF1078_RS08960 at 392.220 kb on + strand, within HMPREF1078_RS08960 at 392.220 kb on + strand, within HMPREF1078_RS08960 at 392.287 kb on + strand, within HMPREF1078_RS08960 at 392.394 kb on + strand at 392.410 kb on - strand at 392.410 kb on - strand at 392.411 kb on + strand at 392.411 kb on + strand at 392.412 kb on - strand at 392.412 kb on - strand at 392.412 kb on - strand at 392.412 kb on - strand at 392.412 kb on - strand at 392.412 kb on - strand at 392.437 kb on + strand at 392.438 kb on - strand at 392.460 kb on - strand at 392.467 kb on - strand at 392.467 kb on - strand at 392.542 kb on + strand at 392.542 kb on + strand at 392.543 kb on - strand at 392.543 kb on - strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.545 kb on - strand at 392.545 kb on - strand at 392.549 kb on + strand at 392.616 kb on + strand at 392.616 kb on + strand at 392.616 kb on + strand at 392.616 kb on + strand at 392.617 kb on - strand at 392.617 kb on - strand at 392.617 kb on - strand at 392.621 kb on + strand at 392.621 kb on + strand at 392.621 kb on + strand at 392.621 kb on + strand at 392.621 kb on + strand at 392.621 kb on + strand at 392.621 kb on + strand at 392.621 kb on + strand at 392.622 kb on - strand at 392.622 kb on - strand at 392.628 kb on - strand at 392.649 kb on - strand at 392.666 kb on + strand at 392.688 kb on + strand at 392.689 kb on - strand at 392.706 kb on - strand at 392.724 kb on - strand at 392.767 kb on - strand at 392.799 kb on + strand, within HMPREF1078_RS08965 at 392.800 kb on - strand, within HMPREF1078_RS08965 at 392.801 kb on + strand, within HMPREF1078_RS08965 at 392.801 kb on + strand, within HMPREF1078_RS08965 at 392.801 kb on + strand, within HMPREF1078_RS08965 at 392.801 kb on + strand, within HMPREF1078_RS08965 at 392.801 kb on + strand, within HMPREF1078_RS08965 at 392.802 kb on - strand, within HMPREF1078_RS08965 at 392.888 kb on + strand, within HMPREF1078_RS08965 at 392.888 kb on + strand, within HMPREF1078_RS08965 at 392.889 kb on - strand, within HMPREF1078_RS08965 at 392.972 kb on + strand, within HMPREF1078_RS08965 at 392.972 kb on + strand, within HMPREF1078_RS08965 at 392.973 kb on - strand, within HMPREF1078_RS08965 at 392.973 kb on - strand, within HMPREF1078_RS08965 at 392.973 kb on - strand, within HMPREF1078_RS08965 at 392.974 kb on + strand, within HMPREF1078_RS08965 at 392.974 kb on + strand, within HMPREF1078_RS08965 at 392.974 kb on + strand, within HMPREF1078_RS08965 at 392.974 kb on + strand, within HMPREF1078_RS08965 at 392.975 kb on - strand, within HMPREF1078_RS08965 at 392.975 kb on - strand, within HMPREF1078_RS08965 at 392.975 kb on - strand, within HMPREF1078_RS08965 at 392.975 kb on - strand, within HMPREF1078_RS08965 at 392.977 kb on - strand, within HMPREF1078_RS08965 at 393.015 kb on + strand, within HMPREF1078_RS08965 at 393.015 kb on + strand, within HMPREF1078_RS08965 at 393.015 kb on + strand, within HMPREF1078_RS08965 at 393.015 kb on + strand, within HMPREF1078_RS08965 at 393.015 kb on + strand, within HMPREF1078_RS08965 at 393.015 kb on + strand, within HMPREF1078_RS08965 at 393.016 kb on - strand, within HMPREF1078_RS08965 at 393.018 kb on + strand, within HMPREF1078_RS08965 at 393.018 kb on + strand, within HMPREF1078_RS08965 at 393.018 kb on + strand, within HMPREF1078_RS08965 at 393.019 kb on - strand, within HMPREF1078_RS08965 at 393.020 kb on + strand, within HMPREF1078_RS08965 at 393.021 kb on - strand, within HMPREF1078_RS08965 at 393.021 kb on - strand, within HMPREF1078_RS08965 at 393.021 kb on - strand, within HMPREF1078_RS08965 at 393.021 kb on - strand, within HMPREF1078_RS08965 at 393.021 kb on - strand, within HMPREF1078_RS08965 at 393.021 kb on - strand, within HMPREF1078_RS08965 at 393.021 kb on - strand, within HMPREF1078_RS08965 at 393.021 kb on - strand, within HMPREF1078_RS08965 at 393.111 kb on - strand, within HMPREF1078_RS08965 at 393.123 kb on + strand at 393.123 kb on + strand at 393.124 kb on - strand at 393.124 kb on - strand at 393.133 kb on + strand at 393.133 kb on + strand at 393.134 kb on - strand at 393.134 kb on - strand at 393.134 kb on - strand at 393.137 kb on + strand at 393.137 kb on + strand at 393.137 kb on + strand at 393.137 kb on + strand at 393.138 kb on - strand at 393.138 kb on - strand at 393.138 kb on - strand at 393.138 kb on - strand at 393.138 kb on - strand at 393.138 kb on - strand at 393.138 kb on - strand at 393.140 kb on - strand at 393.162 kb on - strand at 393.183 kb on + strand at 393.183 kb on + strand at 393.184 kb on - strand at 393.184 kb on - strand at 393.184 kb on - strand at 393.203 kb on + strand at 393.208 kb on + strand at 393.208 kb on + strand at 393.209 kb on - strand at 393.222 kb on - strand at 393.243 kb on + strand at 393.348 kb on - strand at 393.348 kb on - strand at 393.348 kb on - strand at 393.348 kb on - strand at 393.348 kb on - strand at 393.350 kb on - strand at 393.380 kb on - strand at 393.380 kb on - strand at 393.408 kb on + strand at 393.480 kb on + strand, within HMPREF1078_RS08970 at 393.539 kb on + strand, within HMPREF1078_RS08970 at 393.540 kb on - strand, within HMPREF1078_RS08970 at 393.593 kb on + strand, within HMPREF1078_RS08970 at 393.594 kb on - strand, within HMPREF1078_RS08970 at 393.594 kb on - strand, within HMPREF1078_RS08970 at 393.669 kb on + strand, within HMPREF1078_RS08970 at 393.697 kb on + strand, within HMPREF1078_RS08970 at 393.701 kb on - strand, within HMPREF1078_RS08970 at 393.776 kb on + strand, within HMPREF1078_RS08970 at 393.776 kb on + strand, within HMPREF1078_RS08970 at 393.777 kb on - strand, within HMPREF1078_RS08970 at 393.777 kb on - strand, within HMPREF1078_RS08970 at 393.777 kb on - strand, within HMPREF1078_RS08970 at 393.780 kb on + strand, within HMPREF1078_RS08970 at 393.781 kb on - strand, within HMPREF1078_RS08970 at 393.787 kb on + strand, within HMPREF1078_RS08970 at 393.788 kb on - strand, within HMPREF1078_RS08970 at 393.788 kb on - strand, within HMPREF1078_RS08970 at 393.819 kb on - strand, within HMPREF1078_RS08970 at 393.850 kb on - strand, within HMPREF1078_RS08970 at 393.850 kb on - strand, within HMPREF1078_RS08970 at 393.851 kb on + strand, within HMPREF1078_RS08970 at 393.856 kb on + strand, within HMPREF1078_RS08970 at 393.883 kb on - strand, within HMPREF1078_RS08970 at 393.891 kb on + strand, within HMPREF1078_RS08970 at 393.900 kb on - strand, within HMPREF1078_RS08970 at 393.900 kb on - strand, within HMPREF1078_RS08970 at 393.930 kb on + strand, within HMPREF1078_RS08970 at 393.930 kb on + strand, within HMPREF1078_RS08970 at 393.931 kb on - strand, within HMPREF1078_RS08970 at 393.931 kb on - strand, within HMPREF1078_RS08970 at 393.931 kb on - strand, within HMPREF1078_RS08970 at 393.931 kb on - strand, within HMPREF1078_RS08970 at 393.931 kb on - strand, within HMPREF1078_RS08970 at 393.931 kb on - strand, within HMPREF1078_RS08970 at 393.931 kb on - strand, within HMPREF1078_RS08970 at 394.020 kb on + strand at 394.020 kb on + strand at 394.021 kb on - strand at 394.021 kb on - strand at 394.021 kb on - strand at 394.021 kb on - strand at 394.021 kb on - strand at 394.021 kb on - strand at 394.021 kb on - strand at 394.024 kb on + strand at 394.024 kb on + strand at 394.025 kb on - strand at 394.025 kb on - strand at 394.025 kb on - strand at 394.025 kb on - strand at 394.025 kb on - strand at 394.025 kb on - strand at 394.040 kb on + strand at 394.073 kb on + strand at 394.092 kb on + strand at 394.093 kb on - strand at 394.094 kb on + strand at 394.094 kb on + strand at 394.095 kb on - strand at 394.095 kb on - strand at 394.095 kb on - strand at 394.113 kb on + strand at 394.113 kb on + strand at 394.114 kb on - strand at 394.114 kb on - strand at 394.136 kb on + strand at 394.136 kb on + strand at 394.136 kb on + strand at 394.136 kb on + strand at 394.136 kb on + strand at 394.136 kb on + strand at 394.136 kb on + strand at 394.136 kb on + strand at 394.137 kb on - strand at 394.146 kb on - strand at 394.163 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lentilan from mushroom 2.5 mg/mL (C) remove 391,768 + HMPREF1078_RS08960 0.48 +1.1 391,768 + HMPREF1078_RS08960 0.48 -2.2 391,769 - HMPREF1078_RS08960 0.48 +0.3 391,796 + HMPREF1078_RS08960 0.50 -0.8 391,884 + HMPREF1078_RS08960 0.56 -0.7 391,885 - HMPREF1078_RS08960 0.56 +0.9 392,098 + HMPREF1078_RS08960 0.72 -0.5 392,098 + HMPREF1078_RS08960 0.72 -0.2 392,098 + HMPREF1078_RS08960 0.72 +0.9 392,122 + HMPREF1078_RS08960 0.74 +0.1 392,153 - HMPREF1078_RS08960 0.77 +1.3 392,220 + HMPREF1078_RS08960 0.82 -0.7 392,220 + HMPREF1078_RS08960 0.82 -1.8 392,287 + HMPREF1078_RS08960 0.87 -1.2 392,394 + -0.5 392,410 - +0.9 392,410 - +1.2 392,411 + -0.3 392,411 + +0.3 392,412 - +0.4 392,412 - -0.6 392,412 - -1.1 392,412 - -0.5 392,412 - +0.1 392,412 - -0.2 392,437 + -0.9 392,438 - -0.8 392,460 - +1.2 392,467 - -0.1 392,467 - -1.2 392,542 + +1.2 392,542 + +0.5 392,543 - -0.6 392,543 - -0.1 392,544 + -0.9 392,544 + +0.1 392,544 + +1.2 392,544 + +0.8 392,544 + +0.4 392,544 + +0.3 392,544 + +0.3 392,544 + -0.3 392,545 - +1.6 392,545 - +1.7 392,549 + +0.5 392,616 + +1.0 392,616 + -0.5 392,616 + -1.0 392,616 + -0.1 392,617 - +1.2 392,617 - -1.2 392,617 - -1.1 392,621 + -0.1 392,621 + +0.8 392,621 + -0.3 392,621 + +0.1 392,621 + +0.1 392,621 + +0.2 392,621 + -0.2 392,621 + +1.1 392,622 - -1.6 392,622 - -2.0 392,628 - +0.8 392,649 - +0.3 392,666 + +1.1 392,688 + -2.0 392,689 - +0.5 392,706 - +0.1 392,724 - -0.9 392,767 - +0.8 392,799 + HMPREF1078_RS08965 0.14 -0.3 392,800 - HMPREF1078_RS08965 0.14 -0.5 392,801 + HMPREF1078_RS08965 0.14 +1.4 392,801 + HMPREF1078_RS08965 0.14 +1.4 392,801 + HMPREF1078_RS08965 0.14 +1.3 392,801 + HMPREF1078_RS08965 0.14 -0.5 392,801 + HMPREF1078_RS08965 0.14 +0.2 392,802 - HMPREF1078_RS08965 0.14 -0.5 392,888 + HMPREF1078_RS08965 0.35 -2.5 392,888 + HMPREF1078_RS08965 0.35 -1.3 392,889 - HMPREF1078_RS08965 0.35 -0.0 392,972 + HMPREF1078_RS08965 0.55 +0.9 392,972 + HMPREF1078_RS08965 0.55 +0.5 392,973 - HMPREF1078_RS08965 0.55 -0.9 392,973 - HMPREF1078_RS08965 0.55 +0.3 392,973 - HMPREF1078_RS08965 0.55 +0.1 392,974 + HMPREF1078_RS08965 0.55 -0.5 392,974 + HMPREF1078_RS08965 0.55 -0.6 392,974 + HMPREF1078_RS08965 0.55 +0.3 392,974 + HMPREF1078_RS08965 0.55 -0.5 392,975 - HMPREF1078_RS08965 0.55 -0.6 392,975 - HMPREF1078_RS08965 0.55 -1.2 392,975 - HMPREF1078_RS08965 0.55 -1.0 392,975 - HMPREF1078_RS08965 0.55 -0.5 392,977 - HMPREF1078_RS08965 0.56 -0.5 393,015 + HMPREF1078_RS08965 0.65 -1.6 393,015 + HMPREF1078_RS08965 0.65 -0.2 393,015 + HMPREF1078_RS08965 0.65 -0.2 393,015 + HMPREF1078_RS08965 0.65 -1.6 393,015 + HMPREF1078_RS08965 0.65 -2.2 393,015 + HMPREF1078_RS08965 0.65 -0.5 393,016 - HMPREF1078_RS08965 0.65 +1.7 393,018 + HMPREF1078_RS08965 0.65 -0.1 393,018 + HMPREF1078_RS08965 0.65 -0.4 393,018 + HMPREF1078_RS08965 0.65 -0.5 393,019 - HMPREF1078_RS08965 0.66 -1.6 393,020 + HMPREF1078_RS08965 0.66 -0.5 393,021 - HMPREF1078_RS08965 0.66 -0.0 393,021 - HMPREF1078_RS08965 0.66 -0.2 393,021 - HMPREF1078_RS08965 0.66 +0.0 393,021 - HMPREF1078_RS08965 0.66 -1.1 393,021 - HMPREF1078_RS08965 0.66 +0.3 393,021 - HMPREF1078_RS08965 0.66 +0.2 393,021 - HMPREF1078_RS08965 0.66 -1.2 393,021 - HMPREF1078_RS08965 0.66 -1.1 393,111 - HMPREF1078_RS08965 0.87 -1.7 393,123 + +0.8 393,123 + +1.0 393,124 - -0.4 393,124 - -0.4 393,133 + +0.0 393,133 + +2.0 393,134 - -0.4 393,134 - -1.0 393,134 - +0.6 393,137 + -0.0 393,137 + -0.4 393,137 + -1.2 393,137 + -1.2 393,138 - -0.7 393,138 - +0.2 393,138 - +0.7 393,138 - +0.4 393,138 - +1.2 393,138 - +0.8 393,138 - +0.5 393,140 - +1.2 393,162 - -0.2 393,183 + +0.7 393,183 + -0.2 393,184 - -0.4 393,184 - -0.7 393,184 - -0.5 393,203 + -0.4 393,208 + +0.5 393,208 + -0.1 393,209 - -0.1 393,222 - -0.5 393,243 + +1.4 393,348 - -1.6 393,348 - +0.3 393,348 - +2.4 393,348 - +0.4 393,348 - -0.7 393,350 - -0.6 393,380 - -0.5 393,380 - +0.2 393,408 + -1.3 393,480 + HMPREF1078_RS08970 0.13 -2.7 393,539 + HMPREF1078_RS08970 0.23 +1.5 393,540 - HMPREF1078_RS08970 0.23 +0.1 393,593 + HMPREF1078_RS08970 0.32 -0.2 393,594 - HMPREF1078_RS08970 0.32 +0.7 393,594 - HMPREF1078_RS08970 0.32 +0.9 393,669 + HMPREF1078_RS08970 0.44 -0.5 393,697 + HMPREF1078_RS08970 0.49 -0.5 393,701 - HMPREF1078_RS08970 0.49 -0.1 393,776 + HMPREF1078_RS08970 0.62 -1.1 393,776 + HMPREF1078_RS08970 0.62 +1.9 393,777 - HMPREF1078_RS08970 0.62 -0.2 393,777 - HMPREF1078_RS08970 0.62 -0.3 393,777 - HMPREF1078_RS08970 0.62 +1.5 393,780 + HMPREF1078_RS08970 0.62 +0.0 393,781 - HMPREF1078_RS08970 0.63 +3.0 393,787 + HMPREF1078_RS08970 0.64 +0.6 393,788 - HMPREF1078_RS08970 0.64 -2.1 393,788 - HMPREF1078_RS08970 0.64 -0.7 393,819 - HMPREF1078_RS08970 0.69 -0.4 393,850 - HMPREF1078_RS08970 0.74 +0.2 393,850 - HMPREF1078_RS08970 0.74 +1.3 393,851 + HMPREF1078_RS08970 0.74 -1.7 393,856 + HMPREF1078_RS08970 0.75 -0.8 393,883 - HMPREF1078_RS08970 0.79 -0.7 393,891 + HMPREF1078_RS08970 0.81 +0.4 393,900 - HMPREF1078_RS08970 0.82 -1.2 393,900 - HMPREF1078_RS08970 0.82 -0.8 393,930 + HMPREF1078_RS08970 0.87 +0.8 393,930 + HMPREF1078_RS08970 0.87 -0.1 393,931 - HMPREF1078_RS08970 0.87 -0.6 393,931 - HMPREF1078_RS08970 0.87 -0.1 393,931 - HMPREF1078_RS08970 0.87 -1.6 393,931 - HMPREF1078_RS08970 0.87 -0.6 393,931 - HMPREF1078_RS08970 0.87 -0.0 393,931 - HMPREF1078_RS08970 0.87 -0.1 393,931 - HMPREF1078_RS08970 0.87 -1.0 394,020 + +0.5 394,020 + +0.5 394,021 - -0.5 394,021 - +0.1 394,021 - -0.2 394,021 - +1.9 394,021 - -0.5 394,021 - +1.1 394,021 - +0.6 394,024 + -0.8 394,024 + +0.4 394,025 - +1.8 394,025 - -0.7 394,025 - +0.4 394,025 - -0.2 394,025 - -0.4 394,025 - +0.8 394,040 + -2.4 394,073 + +0.7 394,092 + -0.6 394,093 - +0.3 394,094 + +0.2 394,094 + +0.6 394,095 - +0.4 394,095 - +0.6 394,095 - -2.6 394,113 + -0.5 394,113 + -0.4 394,114 - -1.1 394,114 - -0.1 394,136 + -1.8 394,136 + +1.5 394,136 + -0.0 394,136 + -0.4 394,136 + -0.2 394,136 + +0.4 394,136 + -0.5 394,136 + +0.2 394,137 - -1.2 394,146 - -0.2 394,163 + -1.6
Or see this region's nucleotide sequence