Experiment: Lentilan from mushroom 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08090 and HMPREF1078_RS08095 are separated by 853 nucleotides HMPREF1078_RS08095 and HMPREF1078_RS08100 overlap by 6 nucleotides HMPREF1078_RS08100 and HMPREF1078_RS08105 are separated by 53 nucleotides
HMPREF1078_RS08090: HMPREF1078_RS08090 - ClC family H(+)/Cl(-) exchange transporter, at 181,562 to 183,103
_RS08090
HMPREF1078_RS08095: HMPREF1078_RS08095 - queuosine precursor transporter, at 183,957 to 184,643
_RS08095
HMPREF1078_RS08100: HMPREF1078_RS08100 - HAD family phosphatase, at 184,638 to 185,270
_RS08100
HMPREF1078_RS08105: HMPREF1078_RS08105 - ABC transporter substrate-binding protein, at 185,324 to 186,652
_RS08105
Position (kb) 183
184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 182.959 kb on - strand at 182.969 kb on - strand at 183.099 kb on - strand at 183.102 kb on - strand at 183.207 kb on + strand at 183.211 kb on + strand at 183.211 kb on + strand at 183.264 kb on - strand at 183.267 kb on + strand at 183.268 kb on + strand at 183.320 kb on + strand at 183.413 kb on + strand at 183.419 kb on + strand at 183.582 kb on + strand at 183.582 kb on + strand at 183.609 kb on + strand at 183.610 kb on - strand at 183.635 kb on + strand at 183.654 kb on - strand at 183.655 kb on + strand at 183.655 kb on + strand at 183.655 kb on + strand at 183.655 kb on + strand at 183.655 kb on + strand at 183.656 kb on - strand at 183.656 kb on - strand at 183.656 kb on - strand at 183.656 kb on - strand at 183.656 kb on - strand at 183.656 kb on - strand at 183.656 kb on - strand at 183.657 kb on + strand at 183.657 kb on + strand at 183.657 kb on + strand at 183.657 kb on + strand at 183.657 kb on + strand at 183.658 kb on - strand at 183.658 kb on - strand at 183.658 kb on - strand at 183.658 kb on - strand at 183.658 kb on - strand at 183.658 kb on - strand at 183.658 kb on - strand at 183.659 kb on + strand at 183.660 kb on - strand at 183.660 kb on - strand at 183.666 kb on - strand at 183.727 kb on - strand at 183.759 kb on + strand at 183.849 kb on + strand at 183.849 kb on + strand at 183.849 kb on + strand at 183.849 kb on + strand at 183.850 kb on - strand at 183.851 kb on + strand at 183.852 kb on - strand at 183.854 kb on + strand at 183.855 kb on - strand at 183.860 kb on + strand at 183.864 kb on + strand at 183.893 kb on + strand at 183.911 kb on - strand at 183.915 kb on + strand at 183.957 kb on - strand at 183.971 kb on + strand at 183.972 kb on - strand at 183.976 kb on + strand at 184.107 kb on + strand, within HMPREF1078_RS08095 at 184.108 kb on - strand, within HMPREF1078_RS08095 at 184.108 kb on - strand, within HMPREF1078_RS08095 at 184.108 kb on - strand, within HMPREF1078_RS08095 at 184.110 kb on - strand, within HMPREF1078_RS08095 at 184.110 kb on - strand, within HMPREF1078_RS08095 at 184.110 kb on - strand, within HMPREF1078_RS08095 at 184.125 kb on - strand, within HMPREF1078_RS08095 at 184.125 kb on - strand, within HMPREF1078_RS08095 at 184.297 kb on + strand, within HMPREF1078_RS08095 at 184.341 kb on + strand, within HMPREF1078_RS08095 at 184.341 kb on + strand, within HMPREF1078_RS08095 at 184.342 kb on - strand, within HMPREF1078_RS08095 at 184.352 kb on + strand, within HMPREF1078_RS08095 at 184.353 kb on - strand, within HMPREF1078_RS08095 at 184.490 kb on + strand, within HMPREF1078_RS08095 at 184.490 kb on + strand, within HMPREF1078_RS08095 at 184.524 kb on + strand, within HMPREF1078_RS08095 at 184.525 kb on - strand, within HMPREF1078_RS08095 at 184.525 kb on - strand, within HMPREF1078_RS08095 at 184.561 kb on + strand, within HMPREF1078_RS08095 at 184.567 kb on - strand, within HMPREF1078_RS08095 at 184.568 kb on + strand, within HMPREF1078_RS08095 at 184.615 kb on - strand at 184.615 kb on - strand at 184.620 kb on - strand at 184.640 kb on - strand at 184.646 kb on + strand at 184.647 kb on - strand at 184.699 kb on + strand at 184.699 kb on + strand at 184.699 kb on + strand at 184.700 kb on - strand at 184.700 kb on - strand at 184.704 kb on - strand, within HMPREF1078_RS08100 at 184.751 kb on - strand, within HMPREF1078_RS08100 at 184.753 kb on - strand, within HMPREF1078_RS08100 at 184.753 kb on - strand, within HMPREF1078_RS08100 at 184.798 kb on + strand, within HMPREF1078_RS08100 at 184.798 kb on + strand, within HMPREF1078_RS08100 at 184.799 kb on - strand, within HMPREF1078_RS08100 at 184.799 kb on - strand, within HMPREF1078_RS08100 at 184.850 kb on - strand, within HMPREF1078_RS08100 at 184.853 kb on + strand, within HMPREF1078_RS08100 at 184.853 kb on + strand, within HMPREF1078_RS08100 at 184.854 kb on - strand, within HMPREF1078_RS08100 at 184.886 kb on + strand, within HMPREF1078_RS08100 at 184.886 kb on + strand, within HMPREF1078_RS08100 at 184.886 kb on + strand, within HMPREF1078_RS08100 at 184.888 kb on + strand, within HMPREF1078_RS08100 at 184.934 kb on + strand, within HMPREF1078_RS08100 at 184.952 kb on + strand, within HMPREF1078_RS08100 at 184.953 kb on - strand, within HMPREF1078_RS08100 at 184.991 kb on + strand, within HMPREF1078_RS08100 at 184.992 kb on - strand, within HMPREF1078_RS08100 at 185.034 kb on + strand, within HMPREF1078_RS08100 at 185.034 kb on + strand, within HMPREF1078_RS08100 at 185.034 kb on + strand, within HMPREF1078_RS08100 at 185.034 kb on + strand, within HMPREF1078_RS08100 at 185.035 kb on - strand, within HMPREF1078_RS08100 at 185.135 kb on + strand, within HMPREF1078_RS08100 at 185.136 kb on - strand, within HMPREF1078_RS08100 at 185.136 kb on - strand, within HMPREF1078_RS08100 at 185.147 kb on + strand, within HMPREF1078_RS08100 at 185.148 kb on - strand, within HMPREF1078_RS08100 at 185.148 kb on - strand, within HMPREF1078_RS08100 at 185.166 kb on + strand, within HMPREF1078_RS08100 at 185.166 kb on + strand, within HMPREF1078_RS08100 at 185.169 kb on - strand, within HMPREF1078_RS08100 at 185.314 kb on + strand at 185.315 kb on - strand at 185.322 kb on + strand at 185.323 kb on - strand at 185.368 kb on - strand at 185.386 kb on - strand at 185.387 kb on + strand at 185.387 kb on + strand at 185.388 kb on - strand at 185.388 kb on - strand at 185.403 kb on - strand at 185.452 kb on + strand at 185.453 kb on - strand at 185.550 kb on + strand, within HMPREF1078_RS08105 at 185.550 kb on + strand, within HMPREF1078_RS08105
Per-strain Table
Position Strand Gene LocusTag Fraction Lentilan from mushroom 2.5 mg/mL (C) remove 182,959 - +1.3 182,969 - -2.1 183,099 - -0.9 183,102 - -3.6 183,207 + -0.5 183,211 + +0.3 183,211 + -0.1 183,264 - -1.6 183,267 + -1.5 183,268 + +1.1 183,320 + +1.0 183,413 + -1.1 183,419 + -0.8 183,582 + +1.8 183,582 + +0.5 183,609 + +0.6 183,610 - +0.4 183,635 + +0.2 183,654 - -0.1 183,655 + -1.4 183,655 + -1.9 183,655 + +0.6 183,655 + +2.0 183,655 + -0.5 183,656 - -0.4 183,656 - -0.4 183,656 - -0.9 183,656 - -0.5 183,656 - -0.8 183,656 - -0.8 183,656 - -0.2 183,657 + +0.1 183,657 + -1.1 183,657 + -0.6 183,657 + -0.6 183,657 + -2.0 183,658 - -0.5 183,658 - -1.6 183,658 - +0.2 183,658 - +1.1 183,658 - -0.9 183,658 - -0.8 183,658 - +0.7 183,659 + +1.7 183,660 - +1.5 183,660 - -0.7 183,666 - +1.4 183,727 - -1.2 183,759 + +1.8 183,849 + -0.6 183,849 + -0.4 183,849 + -0.8 183,849 + +2.3 183,850 - +0.7 183,851 + +0.7 183,852 - +0.0 183,854 + -0.1 183,855 - +0.4 183,860 + +1.4 183,864 + -2.5 183,893 + -1.5 183,911 - -1.0 183,915 + +1.0 183,957 - -1.7 183,971 + -0.6 183,972 - -0.6 183,976 + -1.1 184,107 + HMPREF1078_RS08095 0.22 -0.6 184,108 - HMPREF1078_RS08095 0.22 +1.4 184,108 - HMPREF1078_RS08095 0.22 -0.3 184,108 - HMPREF1078_RS08095 0.22 -1.4 184,110 - HMPREF1078_RS08095 0.22 -0.6 184,110 - HMPREF1078_RS08095 0.22 +0.2 184,110 - HMPREF1078_RS08095 0.22 -1.2 184,125 - HMPREF1078_RS08095 0.24 -0.1 184,125 - HMPREF1078_RS08095 0.24 -2.6 184,297 + HMPREF1078_RS08095 0.49 -0.5 184,341 + HMPREF1078_RS08095 0.56 +0.9 184,341 + HMPREF1078_RS08095 0.56 -1.9 184,342 - HMPREF1078_RS08095 0.56 -1.5 184,352 + HMPREF1078_RS08095 0.57 +0.1 184,353 - HMPREF1078_RS08095 0.58 -1.8 184,490 + HMPREF1078_RS08095 0.78 -0.5 184,490 + HMPREF1078_RS08095 0.78 +0.4 184,524 + HMPREF1078_RS08095 0.83 +0.5 184,525 - HMPREF1078_RS08095 0.83 -2.7 184,525 - HMPREF1078_RS08095 0.83 +0.3 184,561 + HMPREF1078_RS08095 0.88 -0.9 184,567 - HMPREF1078_RS08095 0.89 +0.7 184,568 + HMPREF1078_RS08095 0.89 +0.1 184,615 - -0.3 184,615 - +0.7 184,620 - -0.5 184,640 - -0.3 184,646 + +0.1 184,647 - +1.4 184,699 + -0.1 184,699 + -0.5 184,699 + +0.4 184,700 - -0.2 184,700 - +2.3 184,704 - HMPREF1078_RS08100 0.10 +0.1 184,751 - HMPREF1078_RS08100 0.18 +0.6 184,753 - HMPREF1078_RS08100 0.18 -1.4 184,753 - HMPREF1078_RS08100 0.18 +0.9 184,798 + HMPREF1078_RS08100 0.25 -0.4 184,798 + HMPREF1078_RS08100 0.25 -0.9 184,799 - HMPREF1078_RS08100 0.25 +0.7 184,799 - HMPREF1078_RS08100 0.25 +0.9 184,850 - HMPREF1078_RS08100 0.33 +0.2 184,853 + HMPREF1078_RS08100 0.34 -1.0 184,853 + HMPREF1078_RS08100 0.34 +0.1 184,854 - HMPREF1078_RS08100 0.34 +0.5 184,886 + HMPREF1078_RS08100 0.39 +0.6 184,886 + HMPREF1078_RS08100 0.39 +0.4 184,886 + HMPREF1078_RS08100 0.39 -0.1 184,888 + HMPREF1078_RS08100 0.39 +1.3 184,934 + HMPREF1078_RS08100 0.47 -0.4 184,952 + HMPREF1078_RS08100 0.50 +0.2 184,953 - HMPREF1078_RS08100 0.50 -0.8 184,991 + HMPREF1078_RS08100 0.56 -0.8 184,992 - HMPREF1078_RS08100 0.56 -1.4 185,034 + HMPREF1078_RS08100 0.63 +0.2 185,034 + HMPREF1078_RS08100 0.63 -0.2 185,034 + HMPREF1078_RS08100 0.63 -0.3 185,034 + HMPREF1078_RS08100 0.63 -1.8 185,035 - HMPREF1078_RS08100 0.63 -0.6 185,135 + HMPREF1078_RS08100 0.79 -0.1 185,136 - HMPREF1078_RS08100 0.79 -2.7 185,136 - HMPREF1078_RS08100 0.79 -0.3 185,147 + HMPREF1078_RS08100 0.80 -0.3 185,148 - HMPREF1078_RS08100 0.81 -0.3 185,148 - HMPREF1078_RS08100 0.81 +2.0 185,166 + HMPREF1078_RS08100 0.83 +1.0 185,166 + HMPREF1078_RS08100 0.83 -0.4 185,169 - HMPREF1078_RS08100 0.84 -0.9 185,314 + +0.7 185,315 - -0.1 185,322 + -1.5 185,323 - -0.4 185,368 - -1.0 185,386 - -2.5 185,387 + +1.6 185,387 + +1.0 185,388 - +0.1 185,388 - +0.2 185,403 - +1.3 185,452 + +0.5 185,453 - +0.8 185,550 + HMPREF1078_RS08105 0.17 +1.0 185,550 + HMPREF1078_RS08105 0.17 -0.4
Or see this region's nucleotide sequence