Experiment: Lentilan from mushroom 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01365 and HMPREF1078_RS01370 are separated by 254 nucleotides HMPREF1078_RS01370 and HMPREF1078_RS01375 are separated by 76 nucleotides
HMPREF1078_RS01365: HMPREF1078_RS01365 - efflux RND transporter periplasmic adaptor subunit, at 352,816 to 353,922
_RS01365
HMPREF1078_RS01370: HMPREF1078_RS01370 - alkaline phosphatase, at 354,177 to 355,871
_RS01370
HMPREF1078_RS01375: HMPREF1078_RS01375 - Xaa-Pro peptidase family protein, at 355,948 to 357,126
_RS01375
Position (kb) 354
355
356 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 353.178 kb on + strand, within HMPREF1078_RS01365 at 353.288 kb on + strand, within HMPREF1078_RS01365 at 353.288 kb on + strand, within HMPREF1078_RS01365 at 353.289 kb on - strand, within HMPREF1078_RS01365 at 353.294 kb on + strand, within HMPREF1078_RS01365 at 353.294 kb on + strand, within HMPREF1078_RS01365 at 353.294 kb on + strand, within HMPREF1078_RS01365 at 353.295 kb on - strand, within HMPREF1078_RS01365 at 353.295 kb on - strand, within HMPREF1078_RS01365 at 353.295 kb on - strand, within HMPREF1078_RS01365 at 353.295 kb on - strand, within HMPREF1078_RS01365 at 353.376 kb on + strand, within HMPREF1078_RS01365 at 353.412 kb on + strand, within HMPREF1078_RS01365 at 353.412 kb on + strand, within HMPREF1078_RS01365 at 353.413 kb on - strand, within HMPREF1078_RS01365 at 353.413 kb on - strand, within HMPREF1078_RS01365 at 353.413 kb on - strand, within HMPREF1078_RS01365 at 353.414 kb on + strand, within HMPREF1078_RS01365 at 353.414 kb on + strand, within HMPREF1078_RS01365 at 353.483 kb on + strand, within HMPREF1078_RS01365 at 353.483 kb on + strand, within HMPREF1078_RS01365 at 353.483 kb on + strand, within HMPREF1078_RS01365 at 353.536 kb on + strand, within HMPREF1078_RS01365 at 353.537 kb on - strand, within HMPREF1078_RS01365 at 353.537 kb on - strand, within HMPREF1078_RS01365 at 353.545 kb on - strand, within HMPREF1078_RS01365 at 353.547 kb on + strand, within HMPREF1078_RS01365 at 353.547 kb on + strand, within HMPREF1078_RS01365 at 353.547 kb on + strand, within HMPREF1078_RS01365 at 353.547 kb on + strand, within HMPREF1078_RS01365 at 353.548 kb on - strand, within HMPREF1078_RS01365 at 353.556 kb on + strand, within HMPREF1078_RS01365 at 353.575 kb on + strand, within HMPREF1078_RS01365 at 353.575 kb on + strand, within HMPREF1078_RS01365 at 353.575 kb on + strand, within HMPREF1078_RS01365 at 353.576 kb on - strand, within HMPREF1078_RS01365 at 353.644 kb on + strand, within HMPREF1078_RS01365 at 353.644 kb on + strand, within HMPREF1078_RS01365 at 353.645 kb on - strand, within HMPREF1078_RS01365 at 353.646 kb on + strand, within HMPREF1078_RS01365 at 353.656 kb on + strand, within HMPREF1078_RS01365 at 353.717 kb on - strand, within HMPREF1078_RS01365 at 353.734 kb on + strand, within HMPREF1078_RS01365 at 353.734 kb on + strand, within HMPREF1078_RS01365 at 353.734 kb on + strand, within HMPREF1078_RS01365 at 353.734 kb on + strand, within HMPREF1078_RS01365 at 353.735 kb on - strand, within HMPREF1078_RS01365 at 353.735 kb on - strand, within HMPREF1078_RS01365 at 353.735 kb on - strand, within HMPREF1078_RS01365 at 353.735 kb on - strand, within HMPREF1078_RS01365 at 353.766 kb on - strand, within HMPREF1078_RS01365 at 353.766 kb on - strand, within HMPREF1078_RS01365 at 353.766 kb on - strand, within HMPREF1078_RS01365 at 353.814 kb on - strand at 353.908 kb on - strand at 353.908 kb on - strand at 353.991 kb on + strand at 353.993 kb on + strand at 353.993 kb on + strand at 353.994 kb on - strand at 353.994 kb on - strand at 353.995 kb on + strand at 353.995 kb on + strand at 353.995 kb on + strand at 353.995 kb on + strand at 353.996 kb on - strand at 353.996 kb on - strand at 354.006 kb on + strand at 354.007 kb on - strand at 354.010 kb on + strand at 354.018 kb on - strand at 354.064 kb on - strand at 354.064 kb on - strand at 354.069 kb on - strand at 354.078 kb on + strand at 354.078 kb on + strand at 354.081 kb on + strand at 354.085 kb on + strand at 354.086 kb on - strand at 354.086 kb on - strand at 354.086 kb on - strand at 354.086 kb on - strand at 354.129 kb on - strand at 354.187 kb on + strand at 354.212 kb on - strand at 354.212 kb on - strand at 354.218 kb on + strand at 354.219 kb on - strand at 354.219 kb on - strand at 354.235 kb on + strand at 354.236 kb on - strand at 354.236 kb on - strand at 354.481 kb on + strand, within HMPREF1078_RS01370 at 354.482 kb on - strand, within HMPREF1078_RS01370 at 354.482 kb on - strand, within HMPREF1078_RS01370 at 354.509 kb on + strand, within HMPREF1078_RS01370 at 354.519 kb on + strand, within HMPREF1078_RS01370 at 354.520 kb on - strand, within HMPREF1078_RS01370 at 354.520 kb on - strand, within HMPREF1078_RS01370 at 354.541 kb on + strand, within HMPREF1078_RS01370 at 354.608 kb on + strand, within HMPREF1078_RS01370 at 354.646 kb on + strand, within HMPREF1078_RS01370 at 354.647 kb on - strand, within HMPREF1078_RS01370 at 354.647 kb on - strand, within HMPREF1078_RS01370 at 354.647 kb on - strand, within HMPREF1078_RS01370 at 354.647 kb on - strand, within HMPREF1078_RS01370 at 354.649 kb on - strand, within HMPREF1078_RS01370 at 354.891 kb on - strand, within HMPREF1078_RS01370 at 354.891 kb on - strand, within HMPREF1078_RS01370 at 354.923 kb on + strand, within HMPREF1078_RS01370 at 354.923 kb on + strand, within HMPREF1078_RS01370 at 355.080 kb on + strand, within HMPREF1078_RS01370 at 355.107 kb on + strand, within HMPREF1078_RS01370 at 355.211 kb on + strand, within HMPREF1078_RS01370 at 355.230 kb on - strand, within HMPREF1078_RS01370 at 355.235 kb on + strand, within HMPREF1078_RS01370 at 355.372 kb on + strand, within HMPREF1078_RS01370 at 355.373 kb on - strand, within HMPREF1078_RS01370 at 355.533 kb on - strand, within HMPREF1078_RS01370 at 355.533 kb on - strand, within HMPREF1078_RS01370 at 355.571 kb on - strand, within HMPREF1078_RS01370 at 355.578 kb on - strand, within HMPREF1078_RS01370 at 355.614 kb on - strand, within HMPREF1078_RS01370 at 355.709 kb on + strand at 355.709 kb on + strand at 355.710 kb on - strand at 355.711 kb on + strand at 355.711 kb on + strand at 355.733 kb on + strand at 355.887 kb on - strand at 355.894 kb on - strand at 355.901 kb on - strand at 355.968 kb on + strand at 355.968 kb on + strand at 356.023 kb on - strand at 356.060 kb on + strand at 356.061 kb on - strand at 356.080 kb on + strand, within HMPREF1078_RS01375 at 356.081 kb on - strand, within HMPREF1078_RS01375 at 356.081 kb on - strand, within HMPREF1078_RS01375 at 356.119 kb on - strand, within HMPREF1078_RS01375 at 356.195 kb on + strand, within HMPREF1078_RS01375 at 356.195 kb on + strand, within HMPREF1078_RS01375 at 356.196 kb on - strand, within HMPREF1078_RS01375 at 356.196 kb on - strand, within HMPREF1078_RS01375 at 356.233 kb on + strand, within HMPREF1078_RS01375 at 356.373 kb on + strand, within HMPREF1078_RS01375 at 356.375 kb on + strand, within HMPREF1078_RS01375 at 356.375 kb on + strand, within HMPREF1078_RS01375 at 356.376 kb on - strand, within HMPREF1078_RS01375 at 356.376 kb on - strand, within HMPREF1078_RS01375 at 356.376 kb on - strand, within HMPREF1078_RS01375 at 356.385 kb on - strand, within HMPREF1078_RS01375 at 356.401 kb on + strand, within HMPREF1078_RS01375 at 356.402 kb on - strand, within HMPREF1078_RS01375 at 356.530 kb on - strand, within HMPREF1078_RS01375 at 356.530 kb on - strand, within HMPREF1078_RS01375 at 356.548 kb on + strand, within HMPREF1078_RS01375 at 356.551 kb on - strand, within HMPREF1078_RS01375 at 356.551 kb on - strand, within HMPREF1078_RS01375 at 356.551 kb on - strand, within HMPREF1078_RS01375 at 356.554 kb on - strand, within HMPREF1078_RS01375 at 356.669 kb on + strand, within HMPREF1078_RS01375 at 356.669 kb on + strand, within HMPREF1078_RS01375 at 356.669 kb on + strand, within HMPREF1078_RS01375 at 356.670 kb on - strand, within HMPREF1078_RS01375 at 356.670 kb on - strand, within HMPREF1078_RS01375 at 356.800 kb on + strand, within HMPREF1078_RS01375 at 356.800 kb on + strand, within HMPREF1078_RS01375 at 356.800 kb on + strand, within HMPREF1078_RS01375 at 356.800 kb on + strand, within HMPREF1078_RS01375 at 356.801 kb on - strand, within HMPREF1078_RS01375 at 356.801 kb on - strand, within HMPREF1078_RS01375 at 356.801 kb on - strand, within HMPREF1078_RS01375 at 356.801 kb on - strand, within HMPREF1078_RS01375 at 356.801 kb on - strand, within HMPREF1078_RS01375 at 356.802 kb on + strand, within HMPREF1078_RS01375 at 356.803 kb on - strand, within HMPREF1078_RS01375 at 356.803 kb on - strand, within HMPREF1078_RS01375 at 356.803 kb on - strand, within HMPREF1078_RS01375 at 356.813 kb on + strand, within HMPREF1078_RS01375 at 356.813 kb on + strand, within HMPREF1078_RS01375 at 356.814 kb on - strand, within HMPREF1078_RS01375
Per-strain Table
Position Strand Gene LocusTag Fraction Lentilan from mushroom 2.5 mg/mL (C) remove 353,178 + HMPREF1078_RS01365 0.33 -0.8 353,288 + HMPREF1078_RS01365 0.43 -0.9 353,288 + HMPREF1078_RS01365 0.43 +1.6 353,289 - HMPREF1078_RS01365 0.43 +0.8 353,294 + HMPREF1078_RS01365 0.43 -0.1 353,294 + HMPREF1078_RS01365 0.43 +0.3 353,294 + HMPREF1078_RS01365 0.43 +0.5 353,295 - HMPREF1078_RS01365 0.43 +0.4 353,295 - HMPREF1078_RS01365 0.43 -0.6 353,295 - HMPREF1078_RS01365 0.43 +0.1 353,295 - HMPREF1078_RS01365 0.43 -1.6 353,376 + HMPREF1078_RS01365 0.51 -0.1 353,412 + HMPREF1078_RS01365 0.54 +1.7 353,412 + HMPREF1078_RS01365 0.54 +0.3 353,413 - HMPREF1078_RS01365 0.54 +0.8 353,413 - HMPREF1078_RS01365 0.54 -1.8 353,413 - HMPREF1078_RS01365 0.54 +0.7 353,414 + HMPREF1078_RS01365 0.54 +0.1 353,414 + HMPREF1078_RS01365 0.54 -0.7 353,483 + HMPREF1078_RS01365 0.60 -0.9 353,483 + HMPREF1078_RS01365 0.60 +1.0 353,483 + HMPREF1078_RS01365 0.60 +1.0 353,536 + HMPREF1078_RS01365 0.65 -0.3 353,537 - HMPREF1078_RS01365 0.65 +0.2 353,537 - HMPREF1078_RS01365 0.65 -1.6 353,545 - HMPREF1078_RS01365 0.66 +2.6 353,547 + HMPREF1078_RS01365 0.66 +0.7 353,547 + HMPREF1078_RS01365 0.66 +0.2 353,547 + HMPREF1078_RS01365 0.66 -0.1 353,547 + HMPREF1078_RS01365 0.66 +0.3 353,548 - HMPREF1078_RS01365 0.66 +2.0 353,556 + HMPREF1078_RS01365 0.67 +0.7 353,575 + HMPREF1078_RS01365 0.69 +1.2 353,575 + HMPREF1078_RS01365 0.69 +0.5 353,575 + HMPREF1078_RS01365 0.69 +1.1 353,576 - HMPREF1078_RS01365 0.69 -2.0 353,644 + HMPREF1078_RS01365 0.75 +0.0 353,644 + HMPREF1078_RS01365 0.75 -0.4 353,645 - HMPREF1078_RS01365 0.75 -0.7 353,646 + HMPREF1078_RS01365 0.75 +1.0 353,656 + HMPREF1078_RS01365 0.76 +0.8 353,717 - HMPREF1078_RS01365 0.81 -0.0 353,734 + HMPREF1078_RS01365 0.83 +2.6 353,734 + HMPREF1078_RS01365 0.83 +2.3 353,734 + HMPREF1078_RS01365 0.83 -0.1 353,734 + HMPREF1078_RS01365 0.83 -0.5 353,735 - HMPREF1078_RS01365 0.83 -1.2 353,735 - HMPREF1078_RS01365 0.83 -0.8 353,735 - HMPREF1078_RS01365 0.83 -0.1 353,735 - HMPREF1078_RS01365 0.83 -0.0 353,766 - HMPREF1078_RS01365 0.86 -0.7 353,766 - HMPREF1078_RS01365 0.86 -1.0 353,766 - HMPREF1078_RS01365 0.86 +1.2 353,814 - -0.8 353,908 - +0.5 353,908 - -2.0 353,991 + +1.6 353,993 + -1.5 353,993 + -2.3 353,994 - -0.7 353,994 - +0.5 353,995 + +1.0 353,995 + -1.1 353,995 + +0.2 353,995 + -2.2 353,996 - -0.5 353,996 - +0.7 354,006 + -3.5 354,007 - +0.3 354,010 + -0.3 354,018 - +1.9 354,064 - -0.6 354,064 - +0.8 354,069 - +0.2 354,078 + +0.4 354,078 + +0.6 354,081 + -0.9 354,085 + -0.5 354,086 - +0.6 354,086 - -0.3 354,086 - -0.3 354,086 - +0.5 354,129 - +0.7 354,187 + -2.4 354,212 - +0.7 354,212 - -0.8 354,218 + +0.6 354,219 - +0.4 354,219 - +0.6 354,235 + +1.0 354,236 - -0.6 354,236 - +0.9 354,481 + HMPREF1078_RS01370 0.18 +2.2 354,482 - HMPREF1078_RS01370 0.18 -2.2 354,482 - HMPREF1078_RS01370 0.18 +2.0 354,509 + HMPREF1078_RS01370 0.20 -0.2 354,519 + HMPREF1078_RS01370 0.20 -0.0 354,520 - HMPREF1078_RS01370 0.20 +0.7 354,520 - HMPREF1078_RS01370 0.20 +0.7 354,541 + HMPREF1078_RS01370 0.21 -1.2 354,608 + HMPREF1078_RS01370 0.25 -1.0 354,646 + HMPREF1078_RS01370 0.28 +0.2 354,647 - HMPREF1078_RS01370 0.28 +1.1 354,647 - HMPREF1078_RS01370 0.28 +1.9 354,647 - HMPREF1078_RS01370 0.28 +0.8 354,647 - HMPREF1078_RS01370 0.28 -0.4 354,649 - HMPREF1078_RS01370 0.28 +0.6 354,891 - HMPREF1078_RS01370 0.42 -0.5 354,891 - HMPREF1078_RS01370 0.42 +1.3 354,923 + HMPREF1078_RS01370 0.44 -0.7 354,923 + HMPREF1078_RS01370 0.44 +1.7 355,080 + HMPREF1078_RS01370 0.53 -0.6 355,107 + HMPREF1078_RS01370 0.55 -0.9 355,211 + HMPREF1078_RS01370 0.61 +1.7 355,230 - HMPREF1078_RS01370 0.62 -0.6 355,235 + HMPREF1078_RS01370 0.62 +0.2 355,372 + HMPREF1078_RS01370 0.71 +1.0 355,373 - HMPREF1078_RS01370 0.71 -0.0 355,533 - HMPREF1078_RS01370 0.80 -1.7 355,533 - HMPREF1078_RS01370 0.80 +0.4 355,571 - HMPREF1078_RS01370 0.82 +1.6 355,578 - HMPREF1078_RS01370 0.83 -1.7 355,614 - HMPREF1078_RS01370 0.85 +1.0 355,709 + -0.3 355,709 + +0.2 355,710 - +0.8 355,711 + +1.8 355,711 + +1.0 355,733 + -0.0 355,887 - -1.5 355,894 - -2.2 355,901 - +0.0 355,968 + +1.8 355,968 + -0.8 356,023 - +1.6 356,060 + +0.5 356,061 - -1.9 356,080 + HMPREF1078_RS01375 0.11 +0.0 356,081 - HMPREF1078_RS01375 0.11 +0.7 356,081 - HMPREF1078_RS01375 0.11 -0.3 356,119 - HMPREF1078_RS01375 0.15 -0.4 356,195 + HMPREF1078_RS01375 0.21 -0.0 356,195 + HMPREF1078_RS01375 0.21 -0.6 356,196 - HMPREF1078_RS01375 0.21 -0.4 356,196 - HMPREF1078_RS01375 0.21 -1.0 356,233 + HMPREF1078_RS01375 0.24 -0.7 356,373 + HMPREF1078_RS01375 0.36 -1.0 356,375 + HMPREF1078_RS01375 0.36 +0.4 356,375 + HMPREF1078_RS01375 0.36 -0.5 356,376 - HMPREF1078_RS01375 0.36 +0.2 356,376 - HMPREF1078_RS01375 0.36 -1.0 356,376 - HMPREF1078_RS01375 0.36 -0.0 356,385 - HMPREF1078_RS01375 0.37 +0.4 356,401 + HMPREF1078_RS01375 0.38 -2.6 356,402 - HMPREF1078_RS01375 0.39 -1.5 356,530 - HMPREF1078_RS01375 0.49 +0.3 356,530 - HMPREF1078_RS01375 0.49 +0.5 356,548 + HMPREF1078_RS01375 0.51 +0.5 356,551 - HMPREF1078_RS01375 0.51 +0.4 356,551 - HMPREF1078_RS01375 0.51 -0.8 356,551 - HMPREF1078_RS01375 0.51 +1.2 356,554 - HMPREF1078_RS01375 0.51 -0.6 356,669 + HMPREF1078_RS01375 0.61 +1.0 356,669 + HMPREF1078_RS01375 0.61 -0.3 356,669 + HMPREF1078_RS01375 0.61 +0.5 356,670 - HMPREF1078_RS01375 0.61 +0.0 356,670 - HMPREF1078_RS01375 0.61 -0.7 356,800 + HMPREF1078_RS01375 0.72 -1.0 356,800 + HMPREF1078_RS01375 0.72 +0.3 356,800 + HMPREF1078_RS01375 0.72 -2.5 356,800 + HMPREF1078_RS01375 0.72 -1.0 356,801 - HMPREF1078_RS01375 0.72 -1.4 356,801 - HMPREF1078_RS01375 0.72 +1.8 356,801 - HMPREF1078_RS01375 0.72 +0.6 356,801 - HMPREF1078_RS01375 0.72 -1.5 356,801 - HMPREF1078_RS01375 0.72 -0.5 356,802 + HMPREF1078_RS01375 0.72 +0.1 356,803 - HMPREF1078_RS01375 0.73 +0.3 356,803 - HMPREF1078_RS01375 0.73 -0.9 356,803 - HMPREF1078_RS01375 0.73 -1.2 356,813 + HMPREF1078_RS01375 0.73 +0.5 356,813 + HMPREF1078_RS01375 0.73 -0.4 356,814 - HMPREF1078_RS01375 0.73 -2.2
Or see this region's nucleotide sequence