Experiment: Lentilan from mushroom 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00665 and HMPREF1078_RS00670 are separated by 0 nucleotides HMPREF1078_RS00670 and HMPREF1078_RS00675 are separated by 247 nucleotides
HMPREF1078_RS00665: HMPREF1078_RS00665 - UDP-N-acetylmuramate dehydrogenase, at 155,339 to 156,352
_RS00665
HMPREF1078_RS00670: HMPREF1078_RS00670 - MBL fold metallo-hydrolase, at 156,353 to 157,138
_RS00670
HMPREF1078_RS00675: HMPREF1078_RS00675 - SGNH/GDSL hydrolase family protein, at 157,386 to 159,137
_RS00675
Position (kb) 156
157
158 Strain fitness (log2 ratio) -2
-1
0
1
2 at 156.345 kb on + strand at 156.345 kb on + strand at 156.345 kb on + strand at 156.345 kb on + strand at 156.345 kb on + strand at 156.361 kb on - strand at 156.402 kb on + strand at 156.403 kb on - strand at 156.425 kb on - strand at 156.425 kb on - strand at 156.457 kb on + strand, within HMPREF1078_RS00670 at 156.458 kb on - strand, within HMPREF1078_RS00670 at 156.458 kb on - strand, within HMPREF1078_RS00670 at 156.466 kb on - strand, within HMPREF1078_RS00670 at 156.545 kb on + strand, within HMPREF1078_RS00670 at 156.546 kb on - strand, within HMPREF1078_RS00670 at 156.546 kb on - strand, within HMPREF1078_RS00670 at 156.582 kb on - strand, within HMPREF1078_RS00670 at 156.609 kb on + strand, within HMPREF1078_RS00670 at 156.642 kb on + strand, within HMPREF1078_RS00670 at 156.642 kb on + strand, within HMPREF1078_RS00670 at 156.642 kb on + strand, within HMPREF1078_RS00670 at 156.643 kb on - strand, within HMPREF1078_RS00670 at 156.643 kb on - strand, within HMPREF1078_RS00670 at 156.643 kb on - strand, within HMPREF1078_RS00670 at 156.643 kb on - strand, within HMPREF1078_RS00670 at 156.643 kb on - strand, within HMPREF1078_RS00670 at 156.682 kb on + strand, within HMPREF1078_RS00670 at 156.689 kb on + strand, within HMPREF1078_RS00670 at 156.689 kb on + strand, within HMPREF1078_RS00670 at 156.690 kb on - strand, within HMPREF1078_RS00670 at 156.707 kb on - strand, within HMPREF1078_RS00670 at 156.710 kb on + strand, within HMPREF1078_RS00670 at 156.838 kb on + strand, within HMPREF1078_RS00670 at 156.845 kb on + strand, within HMPREF1078_RS00670 at 156.858 kb on + strand, within HMPREF1078_RS00670 at 156.863 kb on + strand, within HMPREF1078_RS00670 at 156.881 kb on + strand, within HMPREF1078_RS00670 at 156.881 kb on + strand, within HMPREF1078_RS00670 at 156.882 kb on - strand, within HMPREF1078_RS00670 at 157.004 kb on + strand, within HMPREF1078_RS00670 at 157.125 kb on + strand at 157.132 kb on + strand at 157.133 kb on - strand at 157.133 kb on - strand at 157.139 kb on + strand at 157.283 kb on + strand at 157.348 kb on + strand at 157.358 kb on + strand at 157.391 kb on - strand at 157.433 kb on - strand at 157.749 kb on - strand, within HMPREF1078_RS00675 at 157.749 kb on - strand, within HMPREF1078_RS00675 at 157.751 kb on - strand, within HMPREF1078_RS00675 at 157.771 kb on + strand, within HMPREF1078_RS00675 at 157.771 kb on + strand, within HMPREF1078_RS00675 at 157.771 kb on + strand, within HMPREF1078_RS00675 at 157.771 kb on + strand, within HMPREF1078_RS00675 at 157.772 kb on - strand, within HMPREF1078_RS00675 at 157.772 kb on - strand, within HMPREF1078_RS00675 at 157.772 kb on - strand, within HMPREF1078_RS00675 at 157.772 kb on - strand, within HMPREF1078_RS00675 at 157.773 kb on + strand, within HMPREF1078_RS00675 at 157.774 kb on - strand, within HMPREF1078_RS00675 at 157.774 kb on - strand, within HMPREF1078_RS00675 at 157.950 kb on + strand, within HMPREF1078_RS00675 at 157.990 kb on + strand, within HMPREF1078_RS00675 at 157.991 kb on - strand, within HMPREF1078_RS00675 at 157.994 kb on + strand, within HMPREF1078_RS00675 at 157.995 kb on - strand, within HMPREF1078_RS00675 at 157.995 kb on - strand, within HMPREF1078_RS00675 at 158.051 kb on + strand, within HMPREF1078_RS00675 at 158.052 kb on - strand, within HMPREF1078_RS00675 at 158.126 kb on - strand, within HMPREF1078_RS00675
Per-strain Table
Position Strand Gene LocusTag Fraction Lentilan from mushroom 2.5 mg/mL (C) remove 156,345 + -0.7 156,345 + -1.2 156,345 + -2.2 156,345 + -0.9 156,345 + -0.8 156,361 - +1.2 156,402 + -2.5 156,403 - +0.9 156,425 - +0.2 156,425 - -1.1 156,457 + HMPREF1078_RS00670 0.13 +0.6 156,458 - HMPREF1078_RS00670 0.13 -0.8 156,458 - HMPREF1078_RS00670 0.13 +1.8 156,466 - HMPREF1078_RS00670 0.14 -0.4 156,545 + HMPREF1078_RS00670 0.24 -1.0 156,546 - HMPREF1078_RS00670 0.25 -0.7 156,546 - HMPREF1078_RS00670 0.25 -0.4 156,582 - HMPREF1078_RS00670 0.29 +0.3 156,609 + HMPREF1078_RS00670 0.33 -1.7 156,642 + HMPREF1078_RS00670 0.37 +0.1 156,642 + HMPREF1078_RS00670 0.37 -0.3 156,642 + HMPREF1078_RS00670 0.37 -0.5 156,643 - HMPREF1078_RS00670 0.37 -1.1 156,643 - HMPREF1078_RS00670 0.37 +0.0 156,643 - HMPREF1078_RS00670 0.37 -0.7 156,643 - HMPREF1078_RS00670 0.37 -1.0 156,643 - HMPREF1078_RS00670 0.37 -1.2 156,682 + HMPREF1078_RS00670 0.42 -0.0 156,689 + HMPREF1078_RS00670 0.43 +1.5 156,689 + HMPREF1078_RS00670 0.43 -1.4 156,690 - HMPREF1078_RS00670 0.43 +0.1 156,707 - HMPREF1078_RS00670 0.45 +0.2 156,710 + HMPREF1078_RS00670 0.45 +0.2 156,838 + HMPREF1078_RS00670 0.62 -0.1 156,845 + HMPREF1078_RS00670 0.63 -1.2 156,858 + HMPREF1078_RS00670 0.64 -1.2 156,863 + HMPREF1078_RS00670 0.65 +0.2 156,881 + HMPREF1078_RS00670 0.67 -1.1 156,881 + HMPREF1078_RS00670 0.67 -0.3 156,882 - HMPREF1078_RS00670 0.67 -1.4 157,004 + HMPREF1078_RS00670 0.83 -0.7 157,125 + -0.2 157,132 + -0.7 157,133 - -0.9 157,133 - +0.3 157,139 + -0.4 157,283 + +0.3 157,348 + -0.3 157,358 + +0.6 157,391 - -0.4 157,433 - -0.1 157,749 - HMPREF1078_RS00675 0.21 +1.2 157,749 - HMPREF1078_RS00675 0.21 -0.8 157,751 - HMPREF1078_RS00675 0.21 +0.2 157,771 + HMPREF1078_RS00675 0.22 +1.0 157,771 + HMPREF1078_RS00675 0.22 -0.2 157,771 + HMPREF1078_RS00675 0.22 +0.8 157,771 + HMPREF1078_RS00675 0.22 -0.6 157,772 - HMPREF1078_RS00675 0.22 -0.0 157,772 - HMPREF1078_RS00675 0.22 -2.0 157,772 - HMPREF1078_RS00675 0.22 +0.7 157,772 - HMPREF1078_RS00675 0.22 +0.4 157,773 + HMPREF1078_RS00675 0.22 +0.4 157,774 - HMPREF1078_RS00675 0.22 -1.3 157,774 - HMPREF1078_RS00675 0.22 +0.8 157,950 + HMPREF1078_RS00675 0.32 +0.8 157,990 + HMPREF1078_RS00675 0.34 +0.1 157,991 - HMPREF1078_RS00675 0.35 -0.9 157,994 + HMPREF1078_RS00675 0.35 +0.2 157,995 - HMPREF1078_RS00675 0.35 -1.1 157,995 - HMPREF1078_RS00675 0.35 -1.9 158,051 + HMPREF1078_RS00675 0.38 +0.4 158,052 - HMPREF1078_RS00675 0.38 +0.6 158,126 - HMPREF1078_RS00675 0.42 -0.0
Or see this region's nucleotide sequence